SNP Links for Gene (Select 100873995) - SNP

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Select item 14910625511.

rs1491062551 has merged into rs34151345 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTT,TTTTT,TTTTTT [Show Flanks]
Chromosome:: 1:111908966 (GRCh38)
1:112451588 (GRCh37)
Canonical SPDI:: NC_000001.11:111908951:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000001.11:111908951:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000001.11:111908951:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000001.11:111908951:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000001.11:111908951:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000001.11:111908951:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTTTTTT=0./0 (ALFA)
T=0.4046/2026 (1000Genomes)
HGVS:: NC_000001.11:g.111908966_111908967del, NC_000001.11:g.111908967del, NC_000001.11:g.111908967dup, NC_000001.11:g.111908966_111908967dup, NC_000001.11:g.111908965_111908967dup, NC_000001.11:g.111908964_111908967dup, NC_000001.10:g.112451588_112451589del, NC_000001.10:g.112451589del, NC_000001.10:g.112451589dup, NC_000001.10:g.112451588_112451589dup, NC_000001.10:g.112451587_112451589dup, NC_000001.10:g.112451586_112451589dup, NG_032011.2:g.85203_85204del, NG_032011.2:g.85204del, NG_032011.2:g.85204dup, NG_032011.2:g.85203_85204dup, NG_032011.2:g.85202_85204dup, NG_032011.2:g.85201_85204dup

Select item 14888412462.

rs1488841246 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:111908115 (GRCh38)
1:112450737 (GRCh37)
Canonical SPDI:: NC_000001.11:111908114:T:G
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.111908115T>G, NC_000001.10:g.112450737T>G, NG_032011.2:g.86041A>C

Select item 14882199983.

rs1488219998 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:111907902 (GRCh38)
1:112450524 (GRCh37)
Canonical SPDI:: NC_000001.11:111907901:T:C
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.111907902T>C, NC_000001.10:g.112450524T>C, NG_032011.2:g.86254A>G

Select item 14881613604.

rs1488161360 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:111909096 (GRCh38)
1:112451718 (GRCh37)
Canonical SPDI:: NC_000001.11:111909095:C:T
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000094/1 (ALFA)
T=0.000038/10 (TOPMED)
T=0.000043/6 (GnomAD)
HGVS:: NC_000001.11:g.111909096C>T, NC_000001.10:g.112451718C>T, NG_032011.2:g.85060G>A

Select item 14877964845.

rs1487796484 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 1:111908942 (GRCh38)
1:112451564 (GRCh37)
Canonical SPDI:: NC_000001.11:111908941:G:A,NC_000001.11:111908941:G:T
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.111908942G>A, NC_000001.11:g.111908942G>T, NC_000001.10:g.112451564G>A, NC_000001.10:g.112451564G>T, NG_032011.2:g.85214C>T, NG_032011.2:g.85214C>A

Select item 14875694076.

rs1487569407 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:111908301 (GRCh38)
1:112450923 (GRCh37)
Canonical SPDI:: NC_000001.11:111908300:A:G
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.111908301A>G, NC_000001.10:g.112450923A>G, NG_032011.2:g.85855T>C

Select item 14873649827.

rs1487364982 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:111910256 (GRCh38)
1:112452878 (GRCh37)
Canonical SPDI:: NC_000001.11:111910255:C:T
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.111910256C>T, NC_000001.10:g.112452878C>T, NG_032011.2:g.83900G>A, NR_046619.1:n.246C>T

Select item 14858703278.

rs1485870327 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 1:111910185 (GRCh38)
1:112452807 (GRCh37)
Canonical SPDI:: NC_000001.11:111910184:A:G,NC_000001.11:111910184:A:T
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.111910185A>G, NC_000001.11:g.111910185A>T, NC_000001.10:g.112452807A>G, NC_000001.10:g.112452807A>T, NG_032011.2:g.83971T>C, NG_032011.2:g.83971T>A, NR_046619.1:n.175A>G, NR_046619.1:n.175A>T

Select item 14855024949.

rs1485502494 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 1:111910323 (GRCh38)
1:112452945 (GRCh37)
Canonical SPDI:: NC_000001.11:111910321:ACA:A
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.111910323_111910324del, NC_000001.10:g.112452945_112452946del, NG_032011.2:g.83833_83834del

Select item 148339117910.

rs1483391179 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:111911171 (GRCh38)
1:112453793 (GRCh37)
Canonical SPDI:: NC_000001.11:111911170:A:G
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,500B_downstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.111911171A>G, NC_000001.10:g.112453793A>G, NG_032011.2:g.82985T>C

Select item 148282338011.

rs1482823380 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:111909898 (GRCh38)
1:112452520 (GRCh37)
Canonical SPDI:: NC_000001.11:111909897:G:C
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.111909898G>C, NC_000001.10:g.112452520G>C, NG_032011.2:g.84258C>G

Select item 148252310512.

rs1482523105 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:111911154 (GRCh38)
1:112453776 (GRCh37)
Canonical SPDI:: NC_000001.11:111911153:C:T
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,500B_downstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.111911154C>T, NC_000001.10:g.112453776C>T, NG_032011.2:g.83002G>A

Select item 147965532913.

rs1479655329 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:111909696 (GRCh38)
1:112452318 (GRCh37)
Canonical SPDI:: NC_000001.11:111909695:G:A
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000001.11:g.111909696G>A, NC_000001.10:g.112452318G>A, NG_032011.2:g.84460C>T, NR_046619.1:n.40G>A

Select item 147921303414.

rs1479213034 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:111910271 (GRCh38)
1:112452893 (GRCh37)
Canonical SPDI:: NC_000001.11:111910270:T:C
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.111910271T>C, NC_000001.10:g.112452893T>C, NG_032011.2:g.83885A>G, NR_046619.1:n.261T>C

Select item 147850300815.

rs1478503008 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:111908661 (GRCh38)
1:112451283 (GRCh37)
Canonical SPDI:: NC_000001.11:111908660:G:C
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.111908661G>C, NC_000001.10:g.112451283G>C, NG_032011.2:g.85495C>G

Select item 147721687316.

rs1477216873 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:111909011 (GRCh38)
1:112451633 (GRCh37)
Canonical SPDI:: NC_000001.11:111909010:A:C
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.111909011A>C, NC_000001.10:g.112451633A>C, NG_032011.2:g.85145T>G

Select item 147715402117.

rs1477154021 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:111908455 (GRCh38)
1:112451077 (GRCh37)
Canonical SPDI:: NC_000001.11:111908454:C:G
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000026/7 (TOPMED)
HGVS:: NC_000001.11:g.111908455C>G, NC_000001.10:g.112451077C>G, NG_032011.2:g.85701G>C

Select item 147687176318.

rs1476871763 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:111910025 (GRCh38)
1:112452647 (GRCh37)
Canonical SPDI:: NC_000001.11:111910024:G:A
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000001.11:g.111910025G>A, NC_000001.10:g.112452647G>A, NG_032011.2:g.84131C>T

Select item 147644121319.

rs1476441213 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:111908469 (GRCh38)
1:112451091 (GRCh37)
Canonical SPDI:: NC_000001.11:111908468:G:T
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.111908469G>T, NC_000001.10:g.112451091G>T, NG_032011.2:g.85687C>A

Select item 147492216720.

rs1474922167 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GAGG [Show Flanks]
Chromosome:: 1:111910421 (GRCh38)
1:112453044 (GRCh37)
Canonical SPDI:: NC_000001.11:111910421:GGGAGG:GGGAGGGAGG
Gene:: KCND3 (Varview), KCND3-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: GGGAGGGAGG=0./0 (ALFA)
GGGA=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.111910424_111910427dup, NC_000001.10:g.112453046_112453049dup, NG_032011.2:g.83731_83734dup