SNP Links for Gene (Select 100874021) - SNP

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Links from Gene

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Select item 14905767401.

rs1490576740 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:79009771 (GRCh38)
7:78639087 (GRCh37)
Canonical SPDI:: NC_000007.14:79009770:A:G
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000007.14:g.79009771A>G, NC_000007.13:g.78639087A>G, NG_011487.2:g.448804T>C

Select item 14905264552.

rs1490526455 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 7:79007634 (GRCh38)
7:78636950 (GRCh37)
Canonical SPDI:: NC_000007.14:79007633:T:A,NC_000007.14:79007633:T:C
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.79007634T>A, NC_000007.14:g.79007634T>C, NC_000007.13:g.78636950T>A, NC_000007.13:g.78636950T>C, NG_011487.2:g.450941A>T, NG_011487.2:g.450941A>G

Select item 14905223473.

rs1490522347 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 7:79012097 (GRCh38)
7:78641413 (GRCh37)
Canonical SPDI:: NC_000007.14:79012096:AA:A
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.79012098del, NC_000007.13:g.78641414del, NG_011487.2:g.446478del, NR_046689.1:n.297del

Select item 14900922374.

rs1490092237 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:79010704 (GRCh38)
7:78640020 (GRCh37)
Canonical SPDI:: NC_000007.14:79010703:T:C
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000007.14:g.79010704T>C, NC_000007.13:g.78640020T>C, NG_011487.2:g.447871A>G

Select item 14899437915.

rs1489943791 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 7:79012575 (GRCh38)
7:78641891 (GRCh37)
Canonical SPDI:: NC_000007.14:79012574:A:C
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000007.14:g.79012575A>C, NC_000007.13:g.78641891A>C, NG_011487.2:g.446000T>G

Select item 14894696466.

rs1489469646 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:79007081 (GRCh38)
7:78636397 (GRCh37)
Canonical SPDI:: NC_000007.14:79007080:T:C
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.79007081T>C, NC_000007.13:g.78636397T>C, NG_011487.2:g.451494A>G

Select item 14891106947.

rs1489110694 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 7:79008557 (GRCh38)
7:78637874 (GRCh37)
Canonical SPDI:: NC_000007.14:79008557:TTTTT:TTTTTT
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTT=0./0 (ALFA)
T=0.000029/4 (GnomAD)
T=0.00003/8 (TOPMED)
HGVS:: NC_000007.14:g.79008562dup, NC_000007.13:g.78637878dup, NG_011487.2:g.450017dup

Select item 14887182758.

rs1488718275 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:79008639 (GRCh38)
7:78637955 (GRCh37)
Canonical SPDI:: NC_000007.14:79008638:A:T
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.79008639A>T, NC_000007.13:g.78637955A>T, NG_011487.2:g.449936T>A

Select item 14886457899.

rs1488645789 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:79007514 (GRCh38)
7:78636830 (GRCh37)
Canonical SPDI:: NC_000007.14:79007513:T:A
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.79007514T>A, NC_000007.13:g.78636830T>A, NG_011487.2:g.451061A>T

Select item 148859320010.

rs1488593200 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 7:79011513 (GRCh38)
7:78640829 (GRCh37)
Canonical SPDI:: NC_000007.14:79011512:C:G
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000007.14:g.79011513C>G, NC_000007.13:g.78640829C>G, NG_011487.2:g.447062G>C

Select item 148812776911.

rs1488127769 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 7:79008034 (GRCh38)
7:78637350 (GRCh37)
Canonical SPDI:: NC_000007.14:79008033:G:
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.79008034del, NC_000007.13:g.78637350del, NG_011487.2:g.450541del

Select item 148797785612.

rs1487977856 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 7:79011600 (GRCh38)
7:78640916 (GRCh37)
Canonical SPDI:: NC_000007.14:79011599:C:A
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.79011600C>A, NC_000007.13:g.78640916C>A, NG_011487.2:g.446975G>T

Select item 148795077913.

rs1487950779 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 7:79010549 (GRCh38)
7:78639865 (GRCh37)
Canonical SPDI:: NC_000007.14:79010548:T:G
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.79010549T>G, NC_000007.13:g.78639865T>G, NG_011487.2:g.448026A>C

Select item 148786822214.

rs1487868222 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:79008695 (GRCh38)
7:78638011 (GRCh37)
Canonical SPDI:: NC_000007.14:79008694:A:G
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.79008695A>G, NC_000007.13:g.78638011A>G, NG_011487.2:g.449880T>C

Select item 148683691715.

rs1486836917 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:79009914 (GRCh38)
7:78639230 (GRCh37)
Canonical SPDI:: NC_000007.14:79009913:T:C
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000007.14:g.79009914T>C, NC_000007.13:g.78639230T>C, NG_011487.2:g.448661A>G

Select item 148642659416.

rs1486426594 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:79011275 (GRCh38)
7:78640591 (GRCh37)
Canonical SPDI:: NC_000007.14:79011274:A:G
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.79011275A>G, NC_000007.13:g.78640591A>G, NG_011487.2:g.447300T>C

Select item 148639563317.

rs1486395633 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 7:79009028 (GRCh38)
7:78638345 (GRCh37)
Canonical SPDI:: NC_000007.14:79009028:C:CC
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
C=0.000023/6 (TOPMED)
C=0.000036/5 (GnomAD)
HGVS:: NC_000007.14:g.79009029dup, NC_000007.13:g.78638345dup, NG_011487.2:g.449546dup, NR_046689.1:n.42dup

Select item 148545678818.

rs1485456788 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:79008424 (GRCh38)
7:78637740 (GRCh37)
Canonical SPDI:: NC_000007.14:79008423:C:T
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.79008424C>T, NC_000007.13:g.78637740C>T, NG_011487.2:g.450151G>A

Select item 148454617519.

rs1484546175 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:79009395 (GRCh38)
7:78638711 (GRCh37)
Canonical SPDI:: NC_000007.14:79009394:T:C
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.79009395T>C, NC_000007.13:g.78638711T>C, NG_011487.2:g.449180A>G

Select item 148428874520.

rs1484288745 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 7:79012285 (GRCh38)
7:78641601 (GRCh37)
Canonical SPDI:: NC_000007.14:79012284:C:G
Gene:: MAGI2 (Varview), MAGI2-AS2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000072/19 (TOPMED)
HGVS:: NC_000007.14:g.79012285C>G, NC_000007.13:g.78641601C>G, NG_011487.2:g.446290G>C