SNP Links for Gene (Select 100874034) - SNP

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Select item 14912556711.

rs1491255671 has merged into rs11290106 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAA>-,AAAA,AAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 3:196433380 (GRCh38)
3:196160251 (GRCh37)
Canonical SPDI:: NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: 500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0./0 (ALFA)
-=0.3299/1652 (1000Genomes)
HGVS:: NC_000003.12:g.196433380_196433391del, NC_000003.12:g.196433384_196433391del, NC_000003.12:g.196433385_196433391del, NC_000003.12:g.196433387_196433391del, NC_000003.12:g.196433388_196433391del, NC_000003.12:g.196433389_196433391del, NC_000003.12:g.196433390_196433391del, NC_000003.12:g.196433391del, NC_000003.12:g.196433391dup, NC_000003.12:g.196433390_196433391dup, NC_000003.12:g.196433389_196433391dup, NC_000003.12:g.196433388_196433391dup, NC_000003.12:g.196433387_196433391dup, NC_000003.12:g.196433385_196433391dup, NC_000003.12:g.196433384_196433391dup, NC_000003.11:g.196160251_196160262del, NC_000003.11:g.196160255_196160262del, NC_000003.11:g.196160256_196160262del, NC_000003.11:g.196160258_196160262del, NC_000003.11:g.196160259_196160262del, NC_000003.11:g.196160260_196160262del, NC_000003.11:g.196160261_196160262del, NC_000003.11:g.196160262del, NC_000003.11:g.196160262dup, NC_000003.11:g.196160261_196160262dup, NC_000003.11:g.196160260_196160262dup, NC_000003.11:g.196160259_196160262dup, NC_000003.11:g.196160258_196160262dup, NC_000003.11:g.196160256_196160262dup, NC_000003.11:g.196160255_196160262dup

Select item 14911018522.

rs1491101852 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 3:196433371 (GRCh38)
3:196160242 (GRCh37)
Canonical SPDI:: NC_000003.12:196433370:CA:
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00003/1 (GnomAD)
HGVS:: NC_000003.12:g.196433371_196433372del, NC_000003.11:g.196160242_196160243del

Select item 14910314623.

rs1491031462 has merged into rs11290106 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAA>-,AAAA,AAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 3:196433380 (GRCh38)
3:196160251 (GRCh37)
Canonical SPDI:: NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:196433371:AAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: 500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0./0 (ALFA)
-=0.3299/1652 (1000Genomes)
HGVS:: NC_000003.12:g.196433380_196433391del, NC_000003.12:g.196433384_196433391del, NC_000003.12:g.196433385_196433391del, NC_000003.12:g.196433387_196433391del, NC_000003.12:g.196433388_196433391del, NC_000003.12:g.196433389_196433391del, NC_000003.12:g.196433390_196433391del, NC_000003.12:g.196433391del, NC_000003.12:g.196433391dup, NC_000003.12:g.196433390_196433391dup, NC_000003.12:g.196433389_196433391dup, NC_000003.12:g.196433388_196433391dup, NC_000003.12:g.196433387_196433391dup, NC_000003.12:g.196433385_196433391dup, NC_000003.12:g.196433384_196433391dup, NC_000003.11:g.196160251_196160262del, NC_000003.11:g.196160255_196160262del, NC_000003.11:g.196160256_196160262del, NC_000003.11:g.196160258_196160262del, NC_000003.11:g.196160259_196160262del, NC_000003.11:g.196160260_196160262del, NC_000003.11:g.196160261_196160262del, NC_000003.11:g.196160262del, NC_000003.11:g.196160262dup, NC_000003.11:g.196160261_196160262dup, NC_000003.11:g.196160260_196160262dup, NC_000003.11:g.196160259_196160262dup, NC_000003.11:g.196160258_196160262dup, NC_000003.11:g.196160256_196160262dup, NC_000003.11:g.196160255_196160262dup

Select item 14909347084.

rs1490934708 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:196430245 (GRCh38)
3:196157116 (GRCh37)
Canonical SPDI:: NC_000003.12:196430244:C:T
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.196430245C>T, NC_000003.11:g.196157116C>T

Select item 14909190375.

rs1490919037 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:196431051 (GRCh38)
3:196157922 (GRCh37)
Canonical SPDI:: NC_000003.12:196431050:G:T
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.196431051G>T, NC_000003.11:g.196157922G>T

Select item 14904537586.

rs1490453758 has merged into rs1449239611 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>-,AA [Show Flanks]
Chromosome:: 3:196429680 (GRCh38)
3:196156551 (GRCh37)
Canonical SPDI:: NC_000003.12:196429679:AAAAAAA:AAAAAA,NC_000003.12:196429679:AAAAAAA:AAAAAAAA
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0./0 (ALFA)
-=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.196429686del, NC_000003.12:g.196429686dup, NC_000003.11:g.196156557del, NC_000003.11:g.196156557dup

Select item 14902059257.

rs1490205925 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:196433042 (GRCh38)
3:196159913 (GRCh37)
Canonical SPDI:: NC_000003.12:196433041:G:A
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0.000094/1 (ALFA)
A=0.000029/4 (GnomAD)
HGVS:: NC_000003.12:g.196433042G>A, NC_000003.11:g.196159913G>A

Select item 14897931298.

rs1489793129 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:196429457 (GRCh38)
3:196156328 (GRCh37)
Canonical SPDI:: NC_000003.12:196429456:A:G
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.196429457A>G, NC_000003.11:g.196156328A>G

Select item 14887905429.

rs1488790542 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:196433023 (GRCh38)
3:196159894 (GRCh37)
Canonical SPDI:: NC_000003.12:196433022:G:T
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.196433023G>T, NC_000003.11:g.196159894G>T, NR_046745.1:n.879G>T

Select item 148854648310.

rs1488546483 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 3:196431796 (GRCh38)
3:196158667 (GRCh37)
Canonical SPDI:: NC_000003.12:196431795:G:C,NC_000003.12:196431795:G:T
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
C=0.000009/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.196431796G>C, NC_000003.12:g.196431796G>T, NC_000003.11:g.196158667G>C, NC_000003.11:g.196158667G>T

Select item 148814030411.

rs1488140304 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCT>- [Show Flanks]
Chromosome:: 3:196431247 (GRCh38)
3:196158118 (GRCh37)
Canonical SPDI:: NC_000003.12:196431243:CCTCCT:CCT
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCTCCT=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000021/3 (GnomAD)
HGVS:: NC_000003.12:g.196431244CCT[1], NC_000003.11:g.196158115CCT[1]

Select item 148570558412.

rs1485705584 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:196429528 (GRCh38)
3:196156399 (GRCh37)
Canonical SPDI:: NC_000003.12:196429527:T:G
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.196429528T>G, NC_000003.11:g.196156399T>G

Select item 148539591413.

rs1485395914 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 3:196433277 (GRCh38)
3:196160148 (GRCh37)
Canonical SPDI:: NC_000003.12:196433276:A:C
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00006/1 (TOMMO)
HGVS:: NC_000003.12:g.196433277A>C, NC_000003.11:g.196160148A>C

Select item 148478273214.

rs1484782732 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 3:196432682 (GRCh38)
3:196159553 (GRCh37)
Canonical SPDI:: NC_000003.12:196432681:TT:T
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000003.12:g.196432683del, NC_000003.11:g.196159554del, NR_046745.1:n.539del

Select item 148445805115.

rs1484458051 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 3:196433532 (GRCh38)
3:196160403 (GRCh37)
Canonical SPDI:: NC_000003.12:196433531:A:G,NC_000003.12:196433531:A:T
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000003.12:g.196433532A>G, NC_000003.12:g.196433532A>T, NC_000003.11:g.196160403A>G, NC_000003.11:g.196160403A>T

Select item 148245057216.

rs1482450572 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:196430535 (GRCh38)
3:196157406 (GRCh37)
Canonical SPDI:: NC_000003.12:196430534:G:A
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.196430535G>A, NC_000003.11:g.196157406G>A

Select item 148222314117.

rs1482223141 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 3:196433206 (GRCh38)
3:196160077 (GRCh37)
Canonical SPDI:: NC_000003.12:196433205:C:A
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000003.12:g.196433206C>A, NC_000003.11:g.196160077C>A

Select item 148212727218.

rs1482127272 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 3:196432495 (GRCh38)
3:196159366 (GRCh37)
Canonical SPDI:: NC_000003.12:196432494:C:G
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.196432495C>G, NC_000003.11:g.196159366C>G, NR_046745.1:n.351C>G

Select item 148212492019.

rs1482124920 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:196431453 (GRCh38)
3:196158324 (GRCh37)
Canonical SPDI:: NC_000003.12:196431452:T:G
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.196431453T>G, NC_000003.11:g.196158324T>G

Select item 148171359620.

rs1481713596 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 3:196432138 (GRCh38)
3:196159010 (GRCh37)
Canonical SPDI:: NC_000003.12:196432138:C:CC
Gene:: UBXN7 (Varview), UBXN7-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0.000043/1 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000016/2 (GnomAD_exomes)
HGVS:: NC_000003.12:g.196432139dup, NC_000003.11:g.196159010dup

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