SNP Links for Gene (Select 100996246) - SNP

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Select item 14905501821.

rs1490550182 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 12:132190118 (GRCh38)
12:132674663 (GRCh37)
Canonical SPDI:: NC_000012.12:132190117:G:C
Gene:: LINC02361 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
C=0.000023/6 (TOPMED)
C=0.000562/1 (Korea1K)
HGVS:: NC_000012.12:g.132190118G>C, NC_000012.11:g.132674663G>C, NW_021160007.1:g.97147G>C

Select item 14904974632.

rs1490497463 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:132189578 (GRCh38)
12:132674123 (GRCh37)
Canonical SPDI:: NC_000012.12:132189577:T:C
Gene:: LINC02361 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.132189578T>C, NC_000012.11:g.132674123T>C, NW_021160007.1:g.96607T>C, NR_146452.1:n.118A>G

Select item 14896927373.

rs1489692737 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:132189240 (GRCh38)
12:132673785 (GRCh37)
Canonical SPDI:: NC_000012.12:132189239:T:C
Gene:: LINC02361 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.132189240T>C, NC_000012.11:g.132673785T>C, NW_021160007.1:g.96269T>C, NR_146452.1:n.456A>G

Select item 14896784764.

rs1489678476 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:132190354 (GRCh38)
12:132674899 (GRCh37)
Canonical SPDI:: NC_000012.12:132190353:C:T
Gene:: LINC02361 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000012.12:g.132190354C>T, NC_000012.11:g.132674899C>T, NW_021160007.1:g.97383C>T

Select item 14896633735.

rs1489663373 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:132188543 (GRCh38)
12:132673088 (GRCh37)
Canonical SPDI:: NC_000012.12:132188542:C:T
Gene:: LINC02361 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000012.12:g.132188543C>T, NC_000012.11:g.132673088C>T, NW_021160007.1:g.95572C>T

Select item 14890214976.

rs1489021497 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 12:132191051 (GRCh38)
12:132675596 (GRCh37)
Canonical SPDI:: NC_000012.12:132191050:C:G,NC_000012.12:132191050:C:T
Gene:: LINC02361 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.132191051C>G, NC_000012.12:g.132191051C>T, NC_000012.11:g.132675596C>G, NC_000012.11:g.132675596C>T, NW_021160007.1:g.98080C>G, NW_021160007.1:g.98080C>T

Select item 14889721527.

rs1488972152 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:132191443 (GRCh38)
12:132675988 (GRCh37)
Canonical SPDI:: NC_000012.12:132191442:G:A
Gene:: LINC02361 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000029/4 (GnomAD)
A=0.000053/14 (TOPMED)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000012.12:g.132191443G>A, NC_000012.11:g.132675988G>A, NW_021160007.1:g.98472G>A

Select item 14884312018.

rs1488431201 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:132190344 (GRCh38)
12:132674889 (GRCh37)
Canonical SPDI:: NC_000012.12:132190343:T:C
Gene:: LINC02361 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.132190344T>C, NC_000012.11:g.132674889T>C, NW_021160007.1:g.97373T>C

Select item 14883701099.

rs1488370109 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 12:132189112 (GRCh38)
12:132673657 (GRCh37)
Canonical SPDI:: NC_000012.12:132189111:C:A,NC_000012.12:132189111:C:T
Gene:: LINC02361 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.132189112C>A, NC_000012.12:g.132189112C>T, NC_000012.11:g.132673657C>A, NC_000012.11:g.132673657C>T, NW_021160007.1:g.96141C>A, NW_021160007.1:g.96141C>T

Select item 148785693510.

rs1487856935 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:132187058 (GRCh38)
12:132671603 (GRCh37)
Canonical SPDI:: NC_000012.12:132187057:T:C
Gene:: LINC02361 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000019/5 (TOPMED)
HGVS:: NC_000012.12:g.132187058T>C, NC_000012.11:g.132671603T>C, NW_021160007.1:g.94087T>C, NR_146452.1:n.1161A>G

Select item 148767773311.

rs1487677733 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:132187543 (GRCh38)
12:132672088 (GRCh37)
Canonical SPDI:: NC_000012.12:132187542:G:A
Gene:: LINC02361 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000012.12:g.132187543G>A, NC_000012.11:g.132672088G>A, NW_021160007.1:g.94572G>A, NR_146452.1:n.676C>T

Select item 148741247512.

rs1487412475 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 12:132189725 (GRCh38)
12:132674270 (GRCh37)
Canonical SPDI:: NC_000012.12:132189724:G:A,NC_000012.12:132189724:G:C
Gene:: LINC02361 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.132189725G>A, NC_000012.12:g.132189725G>C, NC_000012.11:g.132674270G>A, NC_000012.11:g.132674270G>C, NW_021160007.1:g.96754G>A, NW_021160007.1:g.96754G>C

Select item 148731340713.

rs1487313407 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:132191374 (GRCh38)
12:132675919 (GRCh37)
Canonical SPDI:: NC_000012.12:132191373:G:A
Gene:: LINC02361 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.132191374G>A, NC_000012.11:g.132675919G>A, NW_021160007.1:g.98403G>A

Select item 148614330614.

rs1486143306 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:132187438 (GRCh38)
12:132671983 (GRCh37)
Canonical SPDI:: NC_000012.12:132187437:C:T
Gene:: LINC02361 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.132187438C>T, NC_000012.11:g.132671983C>T, NW_021160007.1:g.94467C>T, NR_146452.1:n.781G>A

Select item 148548785215.

rs1485487852 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:132191132 (GRCh38)
12:132675677 (GRCh37)
Canonical SPDI:: NC_000012.12:132191131:G:A
Gene:: LINC02361 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.132191132G>A, NC_000012.11:g.132675677G>A, NW_021160007.1:g.98161G>A

Select item 148547173816.

rs1485471738 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 12:132187687 (GRCh38)
12:132672233 (GRCh37)
Canonical SPDI:: NC_000012.12:132187687:GGGG:GGGGG
Gene:: LINC02361 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGG=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.132187691dup, NC_000012.11:g.132672236dup, NW_021160007.1:g.94720dup, NR_146452.1:n.531dup

Select item 148463368417.

rs1484633684 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 12:132188066 (GRCh38)
12:132672611 (GRCh37)
Canonical SPDI:: NC_000012.12:132188065:C:A
Gene:: LINC02361 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.132188066C>A, NC_000012.11:g.132672611C>A, NW_021160007.1:g.95095C>A

Select item 148418100018.

rs1484181000 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 12:132188915 (GRCh38)
12:132673460 (GRCh37)
Canonical SPDI:: NC_000012.12:132188911:ACACA:ACA
Gene:: LINC02361 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ACA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.132188913CA[1], NC_000012.11:g.132673458CA[1], NW_021160007.1:g.95942CA[1]

Select item 148397655619.

rs1483976556 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:132188752 (GRCh38)
12:132673297 (GRCh37)
Canonical SPDI:: NC_000012.12:132188751:G:A
Gene:: LINC02361 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000012.12:g.132188752G>A, NC_000012.11:g.132673297G>A, NW_021160007.1:g.95781G>A

Select item 148310995520.

rs1483109955 [Homo sapiens]

Variant type:: DELINS
Alleles:: GACA>- [Show Flanks]
Chromosome:: 12:132187273 (GRCh38)
12:132671818 (GRCh37)
Canonical SPDI:: NC_000012.12:132187270:CAGACA:CA
Gene:: LINC02361 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000015/4 (TOPMED)
HGVS:: NC_000012.12:g.132187273_132187276del, NC_000012.11:g.132671818_132671821del, NW_021160007.1:g.94302_94305del, NR_146452.1:n.945_948del

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