SNP Links for Gene (Select 10131) - SNP

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Select item 14915765481.

rs1491576548 has merged into rs35081909 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTT>-,TTTT,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT [Show Flanks]
Chromosome:: 16:3658288 (GRCh38)
16:3708289 (GRCh37)
Canonical SPDI:: NC_000016.10:3658281:TTTTTTTTTTTTT:TTTTTT,NC_000016.10:3658281:TTTTTTTTTTTTT:TTTTTTTTTT,NC_000016.10:3658281:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000016.10:3658281:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000016.10:3658281:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000016.10:3658281:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT
Gene:: DNASE1 (Varview), TRAP1 (Varview), LOC124903631 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Clinical significance:: benign
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTT=0./0 (ALFA)
-=0.001/3 (1000Genomes)
HGVS:: NC_000016.10:g.3658288_3658294del, NC_000016.10:g.3658292_3658294del, NC_000016.10:g.3658293_3658294del, NC_000016.10:g.3658294del, NC_000016.10:g.3658294dup, NC_000016.10:g.3658293_3658294dup, NC_000016.9:g.3708289_3708295del, NC_000016.9:g.3708293_3708295del, NC_000016.9:g.3708294_3708295del, NC_000016.9:g.3708295del, NC_000016.9:g.3708295dup, NC_000016.9:g.3708294_3708295dup, NG_033088.1:g.64310_64316del, NG_033088.1:g.64314_64316del, NG_033088.1:g.64315_64316del, NG_033088.1:g.64316del, NG_033088.1:g.64316dup, NG_033088.1:g.64315_64316dup, NG_009285.1:g.10350_10356del, NG_009285.1:g.10354_10356del, NG_009285.1:g.10355_10356del, NG_009285.1:g.10356del, NG_009285.1:g.10356dup, NG_009285.1:g.10355_10356dup

Select item 14915746142.

rs1491574614 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 16:3694000 (GRCh38)
16:3744001 (GRCh37)
Canonical SPDI:: NC_000016.10:3693999:CA:
Gene:: TRAP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00008/1 (ALFA)
HGVS:: NC_000016.10:g.3694000_3694001del, NC_000016.9:g.3744001_3744002del, NG_033088.1:g.28597_28598del

Select item 14915555933.

rs1491555593 has merged into rs1181110685 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,TT,TTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 16:3710887 (GRCh38)
16:3760888 (GRCh37)
Canonical SPDI:: NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTT,NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTTTT,NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTTTTT,NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTTTTTTT,NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTTTTTTTT,NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:3710879:TTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: TRAP1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
TTTTTTTTTTTTT=0.000004/1 (TOPMED)
T=0.038328/22 (NorthernSweden)
HGVS:: NC_000016.10:g.3710887_3710890del, NC_000016.10:g.3710889_3710890del, NC_000016.10:g.3710890del, NC_000016.10:g.3710890dup, NC_000016.10:g.3710889_3710890dup, NC_000016.10:g.3710888_3710890dup, NC_000016.10:g.3710887_3710890dup, NC_000016.10:g.3710886_3710890dup, NC_000016.10:g.3710885_3710890dup, NC_000016.10:g.3710884_3710890dup, NC_000016.10:g.3710883_3710890dup, NC_000016.10:g.3710882_3710890dup, NC_000016.10:g.3710881_3710890dup, NC_000016.10:g.3710880_3710890dup, NC_000016.10:g.3710890_3710891insTTTTTTTTTTTT, NC_000016.10:g.3710890_3710891insTTTTTTTTTTTTT, NC_000016.10:g.3710890_3710891insTTTTTTTTTTTTTT, NC_000016.9:g.3760888_3760891del, NC_000016.9:g.3760890_3760891del, NC_000016.9:g.3760891del, NC_000016.9:g.3760891dup, NC_000016.9:g.3760890_3760891dup, NC_000016.9:g.3760889_3760891dup, NC_000016.9:g.3760888_3760891dup, NC_000016.9:g.3760887_3760891dup, NC_000016.9:g.3760886_3760891dup, NC_000016.9:g.3760885_3760891dup, NC_000016.9:g.3760884_3760891dup, NC_000016.9:g.3760883_3760891dup, NC_000016.9:g.3760882_3760891dup, NC_000016.9:g.3760881_3760891dup, NC_000016.9:g.3760891_3760892insTTTTTTTTTTTT, NC_000016.9:g.3760891_3760892insTTTTTTTTTTTTT, NC_000016.9:g.3760891_3760892insTTTTTTTTTTTTTT, NG_033088.1:g.11715_11718del, NG_033088.1:g.11717_11718del, NG_033088.1:g.11718del, NG_033088.1:g.11718dup, NG_033088.1:g.11717_11718dup, NG_033088.1:g.11716_11718dup, NG_033088.1:g.11715_11718dup, NG_033088.1:g.11714_11718dup, NG_033088.1:g.11713_11718dup, NG_033088.1:g.11712_11718dup, NG_033088.1:g.11711_11718dup, NG_033088.1:g.11710_11718dup, NG_033088.1:g.11709_11718dup, NG_033088.1:g.11708_11718dup, NG_033088.1:g.11718_11719insAAAAAAAAAAAA, NG_033088.1:g.11718_11719insAAAAAAAAAAAAA, NG_033088.1:g.11718_11719insAAAAAAAAAAAAAA

Select item 14914749664.

rs1491474966 [Homo sapiens]

Variant type:: DELINS
Alleles:: AG>- [Show Flanks]
Chromosome:: 16:3658302 (GRCh38)
16:3708303 (GRCh37)
Canonical SPDI:: NC_000016.10:3658299:AGAG:AG
Gene:: DNASE1 (Varview), TRAP1 (Varview), LOC124903631 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAG=0./0 (ALFA)
-=0.00039/54 (GnomAD)
HGVS:: NC_000016.10:g.3658300AG[1], NC_000016.9:g.3708301AG[1], NG_033088.1:g.64295CT[1], NG_009285.1:g.10362AG[1]

Select item 14914736905.

rs1491473690 [Homo sapiens]

Variant type:: DEL
Alleles:: GA>- [Show Flanks]
Chromosome:: 16:3703043 (GRCh38)
16:3753044 (GRCh37)
Canonical SPDI:: NC_000016.10:3703042:GA:
Gene:: TRAP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00008/1 (ALFA)
-=0.00036/10 (TOMMO)
HGVS:: NC_000016.10:g.3703043_3703044del, NC_000016.9:g.3753044_3753045del, NG_033088.1:g.19554_19555del

Select item 14914015316.

rs1491401531 has merged into rs1022505445 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT [Show Flanks]
Chromosome:: 16:3705871 (GRCh38)
16:3755872 (GRCh37)
Canonical SPDI:: NC_000016.10:3705863:TTTTTTTTT:TTTTTTT,NC_000016.10:3705863:TTTTTTTTT:TTTTTTTT,NC_000016.10:3705863:TTTTTTTTT:TTTTTTTTTT
Gene:: TRAP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTT=0./0 (ALFA)
T=0.000318/5 (TOMMO)
T=0.000465/123 (TOPMED)
T=0.001343/6 (Estonian)
HGVS:: NC_000016.10:g.3705871_3705872del, NC_000016.10:g.3705872del, NC_000016.10:g.3705872dup, NC_000016.9:g.3755872_3755873del, NC_000016.9:g.3755873del, NC_000016.9:g.3755873dup, NG_033088.1:g.16733_16734del, NG_033088.1:g.16734del, NG_033088.1:g.16734dup

Select item 14913839937.

rs1491383993 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 16:3709227 (GRCh38)
16:3759228 (GRCh37)
Canonical SPDI:: NC_000016.10:3709226:CA:
Gene:: TRAP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00028/8 (TOMMO)
-=0.00054/2 (TWINSUK)
-=0.00156/6 (ALSPAC)
HGVS:: NC_000016.10:g.3709227_3709228del, NC_000016.9:g.3759228_3759229del, NG_033088.1:g.13370_13371del

Select item 14912145258.

rs1491214525 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 16:3709647 (GRCh38)
16:3759648 (GRCh37)
Canonical SPDI:: NC_000016.10:3709646:CT:
Gene:: TRAP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.3709647_3709648del, NC_000016.9:g.3759648_3759649del, NG_033088.1:g.12950_12951del

Select item 14911910439.

rs1491191043 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GAGTC [Show Flanks]
Chromosome:: 16:3658300 (GRCh38)
16:3708302 (GRCh37)
Canonical SPDI:: NC_000016.10:3658300:GAGTC:GAGTCGAGTC
Gene:: DNASE1 (Varview), TRAP1 (Varview), LOC124903631 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GAGTCGAGTC=0./0 (ALFA)
GAGTC=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.3658301_3658305dup, NC_000016.9:g.3708302_3708306dup, NG_033088.1:g.64293_64297dup, NG_009285.1:g.10363_10367dup

Select item 149117097210.

rs1491170972 has merged into rs36111419 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAA>-,A,AA,AAA,AAAA,AAAAAA,AAAAAAA [Show Flanks]
Chromosome:: 16:3694013 (GRCh38)
16:3744014 (GRCh37)
Canonical SPDI:: NC_000016.10:3694000:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000016.10:3694000:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000016.10:3694000:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000016.10:3694000:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000016.10:3694000:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000016.10:3694000:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000016.10:3694000:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA
Gene:: TRAP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAA=0./0 (ALFA)
AA=0.2093/1048 (1000Genomes)
-=0.475/19 (GENOME_DK)
HGVS:: NC_000016.10:g.3694013_3694017del, NC_000016.10:g.3694014_3694017del, NC_000016.10:g.3694015_3694017del, NC_000016.10:g.3694016_3694017del, NC_000016.10:g.3694017del, NC_000016.10:g.3694017dup, NC_000016.10:g.3694016_3694017dup, NC_000016.9:g.3744014_3744018del, NC_000016.9:g.3744015_3744018del, NC_000016.9:g.3744016_3744018del, NC_000016.9:g.3744017_3744018del, NC_000016.9:g.3744018del, NC_000016.9:g.3744018dup, NC_000016.9:g.3744017_3744018dup, NG_033088.1:g.28593_28597del, NG_033088.1:g.28594_28597del, NG_033088.1:g.28595_28597del, NG_033088.1:g.28596_28597del, NG_033088.1:g.28597del, NG_033088.1:g.28597dup, NG_033088.1:g.28596_28597dup

Select item 149110453511.

rs1491104535 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 16:3699629 (GRCh38)
16:3749630 (GRCh37)
Canonical SPDI:: NC_000016.10:3699628:CA:
Gene:: TRAP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00002/1 (GnomAD)
HGVS:: NC_000016.10:g.3699629_3699630del, NC_000016.9:g.3749630_3749631del, NG_033088.1:g.22968_22969del

Select item 149108807912.

rs1491088079 has merged into rs147569014 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA,AAAAA,AAAAAA,AAAAAAA [Show Flanks]
Chromosome:: 16:3711044 (GRCh38)
16:3761045 (GRCh37)
Canonical SPDI:: NC_000016.10:3711032:AAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000016.10:3711032:AAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000016.10:3711032:AAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000016.10:3711032:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000016.10:3711032:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000016.10:3711032:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000016.10:3711032:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA
Gene:: TRAP1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
A=0.4499/2253 (1000Genomes)
HGVS:: NC_000016.10:g.3711044_3711046del, NC_000016.10:g.3711045_3711046del, NC_000016.10:g.3711046del, NC_000016.10:g.3711046dup, NC_000016.10:g.3711045_3711046dup, NC_000016.10:g.3711044_3711046dup, NC_000016.10:g.3711043_3711046dup, NC_000016.9:g.3761045_3761047del, NC_000016.9:g.3761046_3761047del, NC_000016.9:g.3761047del, NC_000016.9:g.3761047dup, NC_000016.9:g.3761046_3761047dup, NC_000016.9:g.3761045_3761047dup, NC_000016.9:g.3761044_3761047dup, NG_033088.1:g.11563_11565del, NG_033088.1:g.11564_11565del, NG_033088.1:g.11565del, NG_033088.1:g.11565dup, NG_033088.1:g.11564_11565dup, NG_033088.1:g.11563_11565dup, NG_033088.1:g.11562_11565dup

Select item 149108116713.

rs1491081167 has merged into rs34759526 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT [Show Flanks]
Chromosome:: 16:3689255 (GRCh38)
16:3739256 (GRCh37)
Canonical SPDI:: NC_000016.10:3689242:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000016.10:3689242:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000016.10:3689242:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000016.10:3689242:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000016.10:3689242:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000016.10:3689242:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000016.10:3689242:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000016.10:3689242:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000016.10:3689242:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000016.10:3689242:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:3689242:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:3689242:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:3689242:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: TRAP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTT=0./0 (ALFA)
-=0.03512/21 (NorthernSweden)
-=0.32608/1633 (1000Genomes)
HGVS:: NC_000016.10:g.3689255_3689262del, NC_000016.10:g.3689256_3689262del, NC_000016.10:g.3689257_3689262del, NC_000016.10:g.3689258_3689262del, NC_000016.10:g.3689259_3689262del, NC_000016.10:g.3689260_3689262del, NC_000016.10:g.3689261_3689262del, NC_000016.10:g.3689262del, NC_000016.10:g.3689262dup, NC_000016.10:g.3689261_3689262dup, NC_000016.10:g.3689260_3689262dup, NC_000016.10:g.3689259_3689262dup, NC_000016.10:g.3689258_3689262dup, NC_000016.9:g.3739256_3739263del, NC_000016.9:g.3739257_3739263del, NC_000016.9:g.3739258_3739263del, NC_000016.9:g.3739259_3739263del, NC_000016.9:g.3739260_3739263del, NC_000016.9:g.3739261_3739263del, NC_000016.9:g.3739262_3739263del, NC_000016.9:g.3739263del, NC_000016.9:g.3739263dup, NC_000016.9:g.3739262_3739263dup, NC_000016.9:g.3739261_3739263dup, NC_000016.9:g.3739260_3739263dup, NC_000016.9:g.3739259_3739263dup, NG_033088.1:g.33348_33355del, NG_033088.1:g.33349_33355del, NG_033088.1:g.33350_33355del, NG_033088.1:g.33351_33355del, NG_033088.1:g.33352_33355del, NG_033088.1:g.33353_33355del, NG_033088.1:g.33354_33355del, NG_033088.1:g.33355del, NG_033088.1:g.33355dup, NG_033088.1:g.33354_33355dup, NG_033088.1:g.33353_33355dup, NG_033088.1:g.33352_33355dup, NG_033088.1:g.33351_33355dup

Select item 149104374514.

rs1491043745 has merged into rs34658116 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 16:3706466 (GRCh38)
16:3756467 (GRCh37)
Canonical SPDI:: NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000016.10:3706456:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: TRAP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000016.10:g.3706466_3706478del, NC_000016.10:g.3706467_3706478del, NC_000016.10:g.3706468_3706478del, NC_000016.10:g.3706469_3706478del, NC_000016.10:g.3706470_3706478del, NC_000016.10:g.3706471_3706478del, NC_000016.10:g.3706472_3706478del, NC_000016.10:g.3706473_3706478del, NC_000016.10:g.3706474_3706478del, NC_000016.10:g.3706475_3706478del, NC_000016.10:g.3706476_3706478del, NC_000016.10:g.3706477_3706478del, NC_000016.10:g.3706478del, NC_000016.10:g.3706478dup, NC_000016.10:g.3706477_3706478dup, NC_000016.10:g.3706476_3706478dup, NC_000016.10:g.3706475_3706478dup, NC_000016.10:g.3706474_3706478dup, NC_000016.10:g.3706473_3706478dup, NC_000016.10:g.3706471_3706478dup, NC_000016.9:g.3756467_3756479del, NC_000016.9:g.3756468_3756479del, NC_000016.9:g.3756469_3756479del, NC_000016.9:g.3756470_3756479del, NC_000016.9:g.3756471_3756479del, NC_000016.9:g.3756472_3756479del, NC_000016.9:g.3756473_3756479del, NC_000016.9:g.3756474_3756479del, NC_000016.9:g.3756475_3756479del, NC_000016.9:g.3756476_3756479del, NC_000016.9:g.3756477_3756479del, NC_000016.9:g.3756478_3756479del, NC_000016.9:g.3756479del, NC_000016.9:g.3756479dup, NC_000016.9:g.3756478_3756479dup, NC_000016.9:g.3756477_3756479dup, NC_000016.9:g.3756476_3756479dup, NC_000016.9:g.3756475_3756479dup, NC_000016.9:g.3756474_3756479dup, NC_000016.9:g.3756472_3756479dup, NG_033088.1:g.16129_16141del, NG_033088.1:g.16130_16141del, NG_033088.1:g.16131_16141del, NG_033088.1:g.16132_16141del, NG_033088.1:g.16133_16141del, NG_033088.1:g.16134_16141del, NG_033088.1:g.16135_16141del, NG_033088.1:g.16136_16141del, NG_033088.1:g.16137_16141del, NG_033088.1:g.16138_16141del, NG_033088.1:g.16139_16141del, NG_033088.1:g.16140_16141del, NG_033088.1:g.16141del, NG_033088.1:g.16141dup, NG_033088.1:g.16140_16141dup, NG_033088.1:g.16139_16141dup, NG_033088.1:g.16138_16141dup, NG_033088.1:g.16137_16141dup, NG_033088.1:g.16136_16141dup, NG_033088.1:g.16134_16141dup

Select item 149096661715.

rs1490966617 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:3667389 (GRCh38)
16:3717390 (GRCh37)
Canonical SPDI:: NC_000016.10:3667388:T:C
Gene:: TRAP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000016.10:g.3667389T>C, NC_000016.9:g.3717390T>C, NG_033088.1:g.55209A>G

Select item 149088401816.

rs1490884018 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 16:3707716 (GRCh38)
16:3757717 (GRCh37)
Canonical SPDI:: NC_000016.10:3707715:T:A,NC_000016.10:3707715:T:G
Gene:: TRAP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
A=0.03593/105 (KOREAN)
HGVS:: NC_000016.10:g.3707716T>A, NC_000016.10:g.3707716T>G, NC_000016.9:g.3757717T>A, NC_000016.9:g.3757717T>G, NG_033088.1:g.14882A>T, NG_033088.1:g.14882A>C

Select item 149085658917.

rs1490856589 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:3702775 (GRCh38)
16:3752776 (GRCh37)
Canonical SPDI:: NC_000016.10:3702774:G:A
Gene:: TRAP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000602/10 (TOMMO)
HGVS:: NC_000016.10:g.3702775G>A, NC_000016.9:g.3752776G>A, NG_033088.1:g.19823C>T

Select item 149084373318.

rs1490843733 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 16:3693226 (GRCh38)
16:3743227 (GRCh37)
Canonical SPDI:: NC_000016.10:3693225:G:A,NC_000016.10:3693225:G:C
Gene:: TRAP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.3693226G>A, NC_000016.10:g.3693226G>C, NC_000016.9:g.3743227G>A, NC_000016.9:g.3743227G>C, NG_033088.1:g.29372C>T, NG_033088.1:g.29372C>G

Select item 149077126319.

rs1490771263 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:3672112 (GRCh38)
16:3722113 (GRCh37)
Canonical SPDI:: NC_000016.10:3672111:C:T
Gene:: TRAP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000029/4 (GnomAD)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000016.10:g.3672112C>T, NC_000016.9:g.3722113C>T, NG_033088.1:g.50486G>A

Select item 149072141720.

rs1490721417 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:3673432 (GRCh38)
16:3723433 (GRCh37)
Canonical SPDI:: NC_000016.10:3673431:C:T
Gene:: TRAP1 (Varview), LOC124903630 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.3673432C>T, NC_000016.9:g.3723433C>T, NG_033088.1:g.49166G>A

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