SNP Links for Gene (Select 101410535) - SNP

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Select item 14907604721.

rs1490760472 has merged into rs1451042701 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 1:110409325 (GRCh38)
1:110951947 (GRCh37)
Canonical SPDI:: NC_000001.11:110409324:TTTTTT:TTTTT,NC_000001.11:110409324:TTTTTT:TTTTTTT
Gene:: LAMTOR5 (Varview), LAMTOR5-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.110409330del, NC_000001.11:g.110409330dup, NC_000001.10:g.110951952del, NC_000001.10:g.110951952dup

Select item 14907451672.

rs1490745167 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:110411064 (GRCh38)
1:110953686 (GRCh37)
Canonical SPDI:: NC_000001.11:110411063:T:A
Gene:: LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.110411064T>A, NC_000001.10:g.110953686T>A

Select item 14899282723.

rs1489928272 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 1:110410407 (GRCh38)
1:110953029 (GRCh37)
Canonical SPDI:: NC_000001.11:110410406:C:A,NC_000001.11:110410406:C:G,NC_000001.11:110410406:C:T
Gene:: LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000769/9 (ALFA)
G=0.000004/1 (TOPMED)
A=0.001345/23 (TOMMO)
HGVS:: NC_000001.11:g.110410407C>A, NC_000001.11:g.110410407C>G, NC_000001.11:g.110410407C>T, NC_000001.10:g.110953029C>A, NC_000001.10:g.110953029C>G, NC_000001.10:g.110953029C>T

Select item 14894520044.

rs1489452004 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 1:110407409 (GRCh38)
1:110950031 (GRCh37)
Canonical SPDI:: NC_000001.11:110407408:GGG:GG
Gene:: LAMTOR5 (Varview), LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.110407411del, NC_000001.10:g.110950033del

Select item 14887596875.

rs1488759687 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:110414358 (GRCh38)
1:110956980 (GRCh37)
Canonical SPDI:: NC_000001.11:110414357:G:A
Gene:: LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00005/7 (GnomAD)
A=0.0002/53 (TOPMED)
HGVS:: NC_000001.11:g.110414358G>A, NC_000001.10:g.110956980G>A

Select item 14885465626.

rs1488546562 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:110409229 (GRCh38)
1:110951851 (GRCh37)
Canonical SPDI:: NC_000001.11:110409228:G:A
Gene:: LAMTOR5 (Varview), LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.110409229G>A, NC_000001.10:g.110951851G>A

Select item 14874668367.

rs1487466836 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:110414780 (GRCh38)
1:110957402 (GRCh37)
Canonical SPDI:: NC_000001.11:110414779:C:T
Gene:: LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000066/1 (ALFA)
T=0.00005/7 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000001.11:g.110414780C>T, NC_000001.10:g.110957402C>T

Select item 14873987698.

rs1487398769 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:110415815 (GRCh38)
1:110958437 (GRCh37)
Canonical SPDI:: NC_000001.11:110415814:T:C
Gene:: LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.110415815T>C, NC_000001.10:g.110958437T>C

Select item 14871227499.

rs1487122749 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:110413393 (GRCh38)
1:110956015 (GRCh37)
Canonical SPDI:: NC_000001.11:110413392:C:T
Gene:: LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.110413393C>T, NC_000001.10:g.110956015C>T

Select item 148706132610.

rs1487061326 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 1:110415672 (GRCh38)
1:110958294 (GRCh37)
Canonical SPDI:: NC_000001.11:110415671:TT:T
Gene:: LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0.000142/2 (ALFA)
-=0.000157/22 (GnomAD)
-=0.0002/53 (TOPMED)
HGVS:: NC_000001.11:g.110415673del, NC_000001.10:g.110958295del

Select item 148658471511.

rs1486584715 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:110410251 (GRCh38)
1:110952873 (GRCh37)
Canonical SPDI:: NC_000001.11:110410250:G:A
Gene:: LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
A=0.000142/2 (TOMMO)
HGVS:: NC_000001.11:g.110410251G>A, NC_000001.10:g.110952873G>A

Select item 148649047812.

rs1486490478 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:110410948 (GRCh38)
1:110953570 (GRCh37)
Canonical SPDI:: NC_000001.11:110410947:A:G
Gene:: LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.110410948A>G, NC_000001.10:g.110953570A>G

Select item 148644443113.

rs1486444431 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:110406911 (GRCh38)
1:110949533 (GRCh37)
Canonical SPDI:: NC_000001.11:110406910:C:T
Gene:: LAMTOR5 (Varview), LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.110406911C>T, NC_000001.10:g.110949533C>T

Select item 148636608014.

rs1486366080 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:110411879 (GRCh38)
1:110954501 (GRCh37)
Canonical SPDI:: NC_000001.11:110411878:C:T
Gene:: LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.01304/213 (ALFA)
T=0.00479/14 (KOREAN)
HGVS:: NC_000001.11:g.110411879C>T, NC_000001.10:g.110954501C>T

Select item 148630060615.

rs1486300606 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:110407623 (GRCh38)
1:110950245 (GRCh37)
Canonical SPDI:: NC_000001.11:110407622:C:G
Gene:: LAMTOR5 (Varview), LAMTOR5-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,coding_sequence_variant,5_prime_UTR_variant,2KB_upstream_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.110407623C>G, NC_000001.10:g.110950245C>G, NM_006402.3:c.244G>C, NM_006402.2:c.244G>C, NM_001382293.1:c.-3G>C, NP_006393.2:p.Gly82Arg

Select item 148629050016.

rs1486290500 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:110414378 (GRCh38)
1:110957000 (GRCh37)
Canonical SPDI:: NC_000001.11:110414377:G:A
Gene:: LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.110414378G>A, NC_000001.10:g.110957000G>A

Select item 148623897017.

rs1486238970 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:110415667 (GRCh38)
1:110958289 (GRCh37)
Canonical SPDI:: NC_000001.11:110415666:C:T
Gene:: LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.110415667C>T, NC_000001.10:g.110958289C>T

Select item 148587079118.

rs1485870791 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 1:110406998 (GRCh38)
1:110949620 (GRCh37)
Canonical SPDI:: NC_000001.11:110406997:C:A,NC_000001.11:110406997:C:G
Gene:: LAMTOR5 (Varview), LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000001.11:g.110406998C>A, NC_000001.11:g.110406998C>G, NC_000001.10:g.110949620C>A, NC_000001.10:g.110949620C>G

Select item 148571125419.

rs1485711254 [Homo sapiens]

Variant type:: INS
Alleles:: ->GT [Show Flanks]
Chromosome:: 1:110410265 (GRCh38)
1:110952888 (GRCh37)
Canonical SPDI:: NC_000001.11:110410265::GT
Gene:: LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: GT=0.000029/4 (GnomAD)
GT=0.000212/4 (TOMMO)
HGVS:: NC_000001.11:g.110410265_110410266insGT, NC_000001.10:g.110952887_110952888insGT

Select item 148541701120.

rs1485417011 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:110406411 (GRCh38)
1:110949033 (GRCh37)
Canonical SPDI:: NC_000001.11:110406410:C:A,NC_000001.11:110406410:C:T
Gene:: LAMTOR5 (Varview), LAMTOR5-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.110406411C>A, NC_000001.11:g.110406411C>T, NC_000001.10:g.110949033C>A, NC_000001.10:g.110949033C>T

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