SNP Links for Gene (Select 101926903) - SNP

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Items: 1 to 20 of 2334

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Select item 14915520651.

rs1491552065 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TA [Show Flanks]
Chromosome:: 3:116366014 (GRCh38)
3:116084862 (GRCh37)
Canonical SPDI:: NC_000003.12:116366014:A:ATA
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: ATA=0./0 (ALFA)
AT=0.0001/2 (GnomAD)
HGVS:: NC_000003.12:g.116366015_116366016insTA, NC_000003.11:g.116084862_116084863insTA

Select item 14913340892.

rs1491334089 has merged into rs67452614 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAAAAAAAA>-,AAAAA,AAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAATTATGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 3:116366020 (GRCh38)
3:116084867 (GRCh37)
Canonical SPDI:: NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000003.12:116366013:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTATGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAA=0./0 (ALFA)
HGVS:: NC_000003.12:g.116366020_116366039del, NC_000003.12:g.116366025_116366039del, NC_000003.12:g.116366026_116366039del, NC_000003.12:g.116366028_116366039del, NC_000003.12:g.116366029_116366039del, NC_000003.12:g.116366030_116366039del, NC_000003.12:g.116366031_116366039del, NC_000003.12:g.116366032_116366039del, NC_000003.12:g.116366033_116366039del, NC_000003.12:g.116366034_116366039del, NC_000003.12:g.116366035_116366039del, NC_000003.12:g.116366036_116366039del, NC_000003.12:g.116366037_116366039del, NC_000003.12:g.116366038_116366039del, NC_000003.12:g.116366039del, NC_000003.12:g.116366039dup, NC_000003.12:g.116366038_116366039dup, NC_000003.12:g.116366037_116366039dup, NC_000003.12:g.116366036_116366039dup, NC_000003.12:g.116366035_116366039dup, NC_000003.12:g.116366034_116366039dup, NC_000003.12:g.116366033_116366039dup, NC_000003.12:g.116366032_116366039dup, NC_000003.12:g.116366031_116366039dup, NC_000003.12:g.116366030_116366039dup, NC_000003.12:g.116366029_116366039dup, NC_000003.12:g.116366028_116366039dup, NC_000003.12:g.116366027_116366039dup, NC_000003.12:g.116366026_116366039dup, NC_000003.12:g.116366025_116366039dup, NC_000003.12:g.116366024_116366039dup, NC_000003.12:g.116366023_116366039dup, NC_000003.12:g.116366022_116366039dup, NC_000003.12:g.116366039_116366040insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000003.12:g.116366014_116366039A[34]TTATGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA[1], NC_000003.11:g.116084867_116084886del, NC_000003.11:g.116084872_116084886del, NC_000003.11:g.116084873_116084886del, NC_000003.11:g.116084875_116084886del, NC_000003.11:g.116084876_116084886del, NC_000003.11:g.116084877_116084886del, NC_000003.11:g.116084878_116084886del, NC_000003.11:g.116084879_116084886del, NC_000003.11:g.116084880_116084886del, NC_000003.11:g.116084881_116084886del, NC_000003.11:g.116084882_116084886del, NC_000003.11:g.116084883_116084886del, NC_000003.11:g.116084884_116084886del, NC_000003.11:g.116084885_116084886del, NC_000003.11:g.116084886del, NC_000003.11:g.116084886dup, NC_000003.11:g.116084885_116084886dup, NC_000003.11:g.116084884_116084886dup, NC_000003.11:g.116084883_116084886dup, NC_000003.11:g.116084882_116084886dup, NC_000003.11:g.116084881_116084886dup, NC_000003.11:g.116084880_116084886dup, NC_000003.11:g.116084879_116084886dup, NC_000003.11:g.116084878_116084886dup, NC_000003.11:g.116084877_116084886dup, NC_000003.11:g.116084876_116084886dup, NC_000003.11:g.116084875_116084886dup, NC_000003.11:g.116084874_116084886dup, NC_000003.11:g.116084873_116084886dup, NC_000003.11:g.116084872_116084886dup, NC_000003.11:g.116084871_116084886dup, NC_000003.11:g.116084870_116084886dup, NC_000003.11:g.116084869_116084886dup, NC_000003.11:g.116084886_116084887insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000003.11:g.116084861_116084886A[34]TTATGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA[1]

Select item 14908799793.

rs1490879979 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 3:116370560 (GRCh38)
3:116089407 (GRCh37)
Canonical SPDI:: NC_000003.12:116370559:T:C,NC_000003.12:116370559:T:G
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.116370560T>C, NC_000003.12:g.116370560T>G, NC_000003.11:g.116089407T>C, NC_000003.11:g.116089407T>G

Select item 14907854654.

rs1490785465 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:116362695 (GRCh38)
3:116081542 (GRCh37)
Canonical SPDI:: NC_000003.12:116362694:G:A
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000003.12:g.116362695G>A, NC_000003.11:g.116081542G>A

Select item 14907806345.

rs1490780634 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 3:116364484 (GRCh38)
3:116083331 (GRCh37)
Canonical SPDI:: NC_000003.12:116364483:A:C,NC_000003.12:116364483:A:T
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0./0 (SGDP_PRJ)
T=0.00009/2 (GnomAD)
HGVS:: NC_000003.12:g.116364484A>C, NC_000003.12:g.116364484A>T, NC_000003.11:g.116083331A>C, NC_000003.11:g.116083331A>T

Select item 14907606596.

rs1490760659 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 3:116362758 (GRCh38)
3:116081605 (GRCh37)
Canonical SPDI:: NC_000003.12:116362757:C:A
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000003.12:g.116362758C>A, NC_000003.11:g.116081605C>A

Select item 14906748537.

rs1490674853 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 3:116365370 (GRCh38)
3:116084217 (GRCh37)
Canonical SPDI:: NC_000003.12:116365369:C:G
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.00008/1 (ALFA)
HGVS:: NC_000003.12:g.116365370C>G, NC_000003.11:g.116084217C>G

Select item 14906161848.

rs1490616184 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:116363731 (GRCh38)
3:116082578 (GRCh37)
Canonical SPDI:: NC_000003.12:116363730:C:T
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.0013/6 (ALFA)
HGVS:: NC_000003.12:g.116363731C>T, NC_000003.11:g.116082578C>T

Select item 14902908629.

rs1490290862 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:116365870 (GRCh38)
3:116084717 (GRCh37)
Canonical SPDI:: NC_000003.12:116365869:G:A
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000003.12:g.116365870G>A, NC_000003.11:g.116084717G>A

Select item 148980670210.

rs1489806702 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 3:116364201 (GRCh38)
3:116083048 (GRCh37)
Canonical SPDI:: NC_000003.12:116364200:A:
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.116364201del, NC_000003.11:g.116083048del

Select item 148970153411.

rs1489701534 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 3:116368276 (GRCh38)
3:116087123 (GRCh37)
Canonical SPDI:: NC_000003.12:116368275:C:A,NC_000003.12:116368275:C:G
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.116368276C>A, NC_000003.12:g.116368276C>G, NC_000003.11:g.116087123C>A, NC_000003.11:g.116087123C>G

Select item 148920498812.

rs1489204988 [Homo sapiens]

Variant type:: SNV:
Alleles:: T>A
Chromosome:: no mapping
Canonical SPDI:

Select item 148916273413.

rs1489162734 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:116365878 (GRCh38)
3:116084725 (GRCh37)
Canonical SPDI:: NC_000003.12:116365877:G:T
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000003.12:g.116365878G>T, NC_000003.11:g.116084725G>T

Select item 148891979214.

rs1488919792 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 3:116366028 (GRCh38)
3:116084875 (GRCh37)
Canonical SPDI:: NC_000003.12:116366027:A:T
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000003.12:g.116366028A>T, NC_000003.11:g.116084875A>T

Select item 148889435615.

rs1488894356 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:116366846 (GRCh38)
3:116085693 (GRCh37)
Canonical SPDI:: NC_000003.12:116366845:G:A
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.116366846G>A, NC_000003.11:g.116085693G>A

Select item 148867958916.

rs1488679589 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 3:116369446 (GRCh38)
3:116088293 (GRCh37)
Canonical SPDI:: NC_000003.12:116369445:TT:T
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000064/9 (GnomAD)
-=0.000079/21 (TOPMED)
HGVS:: NC_000003.12:g.116369447del, NC_000003.11:g.116088294del

Select item 148831635517.

rs1488316355 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 3:116362687 (GRCh38)
3:116081534 (GRCh37)
Canonical SPDI:: NC_000003.12:116362686:G:C
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000003.12:g.116362687G>C, NC_000003.11:g.116081534G>C

Select item 148812765618.

rs1488127656 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:116360309 (GRCh38)
3:116079156 (GRCh37)
Canonical SPDI:: NC_000003.12:116360308:G:A
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000003.12:g.116360309G>A, NC_000003.11:g.116079156G>A

Select item 148779173419.

rs1487791734 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 3:116362740 (GRCh38)
3:116081587 (GRCh37)
Canonical SPDI:: NC_000003.12:116362739:C:A
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00002/2 (GnomAD)
A=0.0007/2 (KOREAN)
A=0.00168/3 (Korea1K)
A=0.00407/68 (TOMMO)
HGVS:: NC_000003.12:g.116362740C>A, NC_000003.11:g.116081587C>A

Select item 148722442920.

rs1487224429 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 3:116361137 (GRCh38)
3:116079984 (GRCh37)
Canonical SPDI:: NC_000003.12:116361136:G:C
Gene:: LSAMP (Varview), LSAMP-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.0003/3 (TOMMO)
HGVS:: NC_000003.12:g.116361137G>C, NC_000003.11:g.116079984G>C

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