SNP Links for Gene (Select 101927015) - SNP

Links from Gene

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Select item 14909658731.

rs1490965873 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 9:68547885 (GRCh38)
9:71162801 (GRCh37)
Canonical SPDI:: NC_000009.12:68547884:T:C,NC_000009.12:68547884:T:G
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000009.12:g.68547885T>C, NC_000009.12:g.68547885T>G, NC_000009.11:g.71162801T>C, NC_000009.11:g.71162801T>G

Select item 14897917852.

rs1489791785 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:68546192 (GRCh38)
9:71161108 (GRCh37)
Canonical SPDI:: NC_000009.12:68546191:C:A
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000009.12:g.68546192C>A, NC_000009.11:g.71161108C>A

Select item 14897407863.

rs1489740786 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 9:68548552 (GRCh38)
9:71163468 (GRCh37)
Canonical SPDI:: NC_000009.12:68548551:CCCCC:CCCC
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: CCCC=0./0 (ALFA)
HGVS:: NC_000009.12:g.68548556del, NC_000009.11:g.71163472del

Select item 14894987294.

rs1489498729 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:68546759 (GRCh38)
9:71161675 (GRCh37)
Canonical SPDI:: NC_000009.12:68546758:G:A
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.68546759G>A, NC_000009.11:g.71161675G>A

Select item 14882259605.

rs1488225960 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:68544101 (GRCh38)
9:71159017 (GRCh37)
Canonical SPDI:: NC_000009.12:68544100:C:T
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.68544101C>T, NC_000009.11:g.71159017C>T

Select item 14882002946.

rs1488200294 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:68545198 (GRCh38)
9:71160114 (GRCh37)
Canonical SPDI:: NC_000009.12:68545197:G:A
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.68545198G>A, NC_000009.11:g.71160114G>A

Select item 14878817747.

rs1487881774 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 9:68547353 (GRCh38)
9:71162269 (GRCh37)
Canonical SPDI:: NC_000009.12:68547352:GG:G
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000106/2 (TOMMO)
HGVS:: NC_000009.12:g.68547354del, NC_000009.11:g.71162270del

Select item 14876704468.

rs1487670446 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 9:68546305 (GRCh38)
9:71161221 (GRCh37)
Canonical SPDI:: NC_000009.12:68546304:C:G
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.002396/7 (KOREAN)
HGVS:: NC_000009.12:g.68546305C>G, NC_000009.11:g.71161221C>G

Select item 14875762709.

rs1487576270 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:68546641 (GRCh38)
9:71161557 (GRCh37)
Canonical SPDI:: NC_000009.12:68546640:C:T
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000009.12:g.68546641C>T, NC_000009.11:g.71161557C>T

Select item 148719749810.

rs1487197498 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:68547725 (GRCh38)
9:71162641 (GRCh37)
Canonical SPDI:: NC_000009.12:68547724:G:A
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000009.12:g.68547725G>A, NC_000009.11:g.71162641G>A

Select item 148661876911.

rs1486618769 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 9:68544326 (GRCh38)
9:71159242 (GRCh37)
Canonical SPDI:: NC_000009.12:68544325:G:A,NC_000009.12:68544325:G:T
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000084/1 (ALFA)
T=0.000015/4 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000009.12:g.68544326G>A, NC_000009.12:g.68544326G>T, NC_000009.11:g.71159242G>A, NC_000009.11:g.71159242G>T

Select item 148543399212.

rs1485433992 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:68548519 (GRCh38)
9:71163435 (GRCh37)
Canonical SPDI:: NC_000009.12:68548518:T:A
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000009.12:g.68548519T>A, NC_000009.11:g.71163435T>A

Select item 148465704313.

rs1484657043 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:68545284 (GRCh38)
9:71160200 (GRCh37)
Canonical SPDI:: NC_000009.12:68545283:C:T
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000156/1 (1000Genomes)
T=0.000342/1 (KOREAN)
T=0.000354/6 (TOMMO)
HGVS:: NC_000009.12:g.68545284C>T, NC_000009.11:g.71160200C>T

Select item 148417114114.

rs1484171141 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:68545428 (GRCh38)
9:71160344 (GRCh37)
Canonical SPDI:: NC_000009.12:68545427:C:T
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.68545428C>T, NC_000009.11:g.71160344C>T

Select item 148145354715.

rs1481453547 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 9:68547971 (GRCh38)
9:71162887 (GRCh37)
Canonical SPDI:: NC_000009.12:68547970:G:A,NC_000009.12:68547970:G:T
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.68547971G>A, NC_000009.12:g.68547971G>T, NC_000009.11:g.71162887G>A, NC_000009.11:g.71162887G>T

Select item 148047565016.

rs1480475650 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:68548490 (GRCh38)
9:71163406 (GRCh37)
Canonical SPDI:: NC_000009.12:68548489:G:C
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.68548490G>C, NC_000009.11:g.71163406G>C

Select item 147831320317.

rs1478313203 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 9:68548579 (GRCh38)
9:71163495 (GRCh37)
Canonical SPDI:: NC_000009.12:68548578:TTT:TT
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: -=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.68548581del, NC_000009.11:g.71163497del

Select item 147667914618.

rs1476679146 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:68547536 (GRCh38)
9:71162452 (GRCh37)
Canonical SPDI:: NC_000009.12:68547535:G:T
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.68547536G>T, NC_000009.11:g.71162452G>T

Select item 147438803619.

rs1474388036 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:68544184 (GRCh38)
9:71159100 (GRCh37)
Canonical SPDI:: NC_000009.12:68544183:C:T
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.68544184C>T, NC_000009.11:g.71159100C>T

Select item 147397865120.

rs1473978651 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 9:68545390 (GRCh38)
9:71160306 (GRCh37)
Canonical SPDI:: NC_000009.12:68545389:C:G,NC_000009.12:68545389:C:T
Gene:: LINC01506 (Varview), TMEM252-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.004762/1 (Vietnamese)
HGVS:: NC_000009.12:g.68545390C>G, NC_000009.12:g.68545390C>T, NC_000009.11:g.71160306C>G, NC_000009.11:g.71160306C>T

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