SNP Links for Gene (Select 101927074) - SNP

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Select item 14905710851.

rs1490571085 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:41880589 (GRCh38)
4:41882606 (GRCh37)
Canonical SPDI:: NC_000004.12:41880588:C:T
Gene:: LINC00682 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.41880589C>T, NC_000004.11:g.41882606C>T, NR_104143.1:n.357G>A

Select item 14897538422.

rs1489753842 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:41879187 (GRCh38)
4:41881204 (GRCh37)
Canonical SPDI:: NC_000004.12:41879186:A:G
Gene:: LINC00682 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.41879187A>G, NC_000004.11:g.41881204A>G

Select item 14890186833.

rs1489018683 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 4:41879921 (GRCh38)
4:41881938 (GRCh37)
Canonical SPDI:: NC_000004.12:41879920:AA:A
Gene:: LINC00682 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
-=0.000156/1 (1000Genomes)
HGVS:: NC_000004.12:g.41879922del, NC_000004.11:g.41881939del, NR_104143.1:n.1025del

Select item 14881798234.

rs1488179823 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 4:41883730 (GRCh38)
4:41885747 (GRCh37)
Canonical SPDI:: NC_000004.12:41883729:G:C
Gene:: LINC00682 (Varview), LOC124900696 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
C=0.000546/1 (Korea1K)
C=0.001369/4 (KOREAN)
C=0.001699/28 (TOMMO)
HGVS:: NC_000004.12:g.41883730G>C, NC_000004.11:g.41885747G>C

Select item 14872936105.

rs1487293610 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:41880136 (GRCh38)
4:41882153 (GRCh37)
Canonical SPDI:: NC_000004.12:41880135:C:T
Gene:: LINC00682 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.41880136C>T, NC_000004.11:g.41882153C>T, NR_104143.1:n.810G>A

Select item 14868427576.

rs1486842757 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:41883819 (GRCh38)
4:41885836 (GRCh37)
Canonical SPDI:: NC_000004.12:41883818:A:G
Gene:: LINC00682 (Varview), LOC124900696 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.41883819A>G, NC_000004.11:g.41885836A>G

Select item 14867701767.

rs1486770176 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 4:41880448 (GRCh38)
4:41882465 (GRCh37)
Canonical SPDI:: NC_000004.12:41880447:G:A,NC_000004.12:41880447:G:T
Gene:: LINC00682 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000021/3 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000004.12:g.41880448G>A, NC_000004.12:g.41880448G>T, NC_000004.11:g.41882465G>A, NC_000004.11:g.41882465G>T, NR_104143.1:n.498C>T, NR_104143.1:n.498C>A

Select item 14862249258.

rs1486224925 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G,T [Show Flanks]
Chromosome:: 4:41882840 (GRCh38)
4:41884857 (GRCh37)
Canonical SPDI:: NC_000004.12:41882839:A:C,NC_000004.12:41882839:A:G,NC_000004.12:41882839:A:T
Gene:: LINC00682 (Varview), LOC124900696 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
G=0.000212/4 (TOMMO)
HGVS:: NC_000004.12:g.41882840A>C, NC_000004.12:g.41882840A>G, NC_000004.12:g.41882840A>T, NC_000004.11:g.41884857A>C, NC_000004.11:g.41884857A>G, NC_000004.11:g.41884857A>T

Select item 14858223279.

rs1485822327 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:41883610 (GRCh38)
4:41885627 (GRCh37)
Canonical SPDI:: NC_000004.12:41883609:A:G
Gene:: LINC00682 (Varview), LOC124900696 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000004.12:g.41883610A>G, NC_000004.11:g.41885627A>G, XR_007058105.1:n.136T>C

Select item 148533686410.

rs1485336864 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 4:41879244 (GRCh38)
4:41881261 (GRCh37)
Canonical SPDI:: NC_000004.12:41879243:A:C
Gene:: LINC00682 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000004.12:g.41879244A>C, NC_000004.11:g.41881261A>C

Select item 148516564611.

rs1485165646 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 4:41881751 (GRCh38)
4:41883768 (GRCh37)
Canonical SPDI:: NC_000004.12:41881750:C:G
Gene:: LINC00682 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000021/3 (GnomAD)
G=0.001129/2 (Korea1K)
G=0.001376/4 (KOREAN)
G=0.003963/66 (TOMMO)
HGVS:: NC_000004.12:g.41881751C>G, NC_000004.11:g.41883768C>G

Select item 148494386312.

rs1484943863 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 4:41880225 (GRCh38)
4:41882242 (GRCh37)
Canonical SPDI:: NC_000004.12:41880224:T:A
Gene:: LINC00682 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000069/1 (ALFA)
A=0.000091/24 (TOPMED)
A=0.0001/14 (GnomAD)
A=0.000312/2 (1000Genomes)
HGVS:: NC_000004.12:g.41880225T>A, NC_000004.11:g.41882242T>A, NR_104143.1:n.721A>T

Select item 148488348913.

rs1484883489 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:41882931 (GRCh38)
4:41884948 (GRCh37)
Canonical SPDI:: NC_000004.12:41882930:G:A
Gene:: LINC00682 (Varview), LOC124900696 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.41882931G>A, NC_000004.11:g.41884948G>A

Select item 148424813014.

rs1484248130 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:41882098 (GRCh38)
4:41884115 (GRCh37)
Canonical SPDI:: NC_000004.12:41882097:C:T
Gene:: LINC00682 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000023/6 (TOPMED)
HGVS:: NC_000004.12:g.41882098C>T, NC_000004.11:g.41884115C>T

Select item 148356006515.

rs1483560065 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:41881316 (GRCh38)
4:41883333 (GRCh37)
Canonical SPDI:: NC_000004.12:41881315:G:A
Gene:: LINC00682 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.41881316G>A, NC_000004.11:g.41883333G>A

Select item 148352542316.

rs1483525423 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:41880705 (GRCh38)
4:41882722 (GRCh37)
Canonical SPDI:: NC_000004.12:41880704:G:A
Gene:: LINC00682 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.41880705G>A, NC_000004.11:g.41882722G>A, NR_104143.1:n.241C>T

Select item 148310430417.

rs1483104304 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:41881829 (GRCh38)
4:41883846 (GRCh37)
Canonical SPDI:: NC_000004.12:41881828:T:C
Gene:: LINC00682 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000004.12:g.41881829T>C, NC_000004.11:g.41883846T>C

Select item 148250063718.

rs1482500637 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 4:41883973 (GRCh38)
4:41885990 (GRCh37)
Canonical SPDI:: NC_000004.12:41883972:T:G
Gene:: LINC00682 (Varview), LOC124900696 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000004.12:g.41883973T>G, NC_000004.11:g.41885990T>G

Select item 148183265719.

rs1481832657 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 4:41881933 (GRCh38)
4:41883950 (GRCh37)
Canonical SPDI:: NC_000004.12:41881932:C:A
Gene:: LINC00682 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.41881933C>A, NC_000004.11:g.41883950C>A

Select item 148180162420.

rs1481801624 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 4:41879663 (GRCh38)
4:41881680 (GRCh37)
Canonical SPDI:: NC_000004.12:41879662:TT:T
Gene:: LINC00682 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000004.12:g.41879664del, NC_000004.11:g.41881681del, NR_104143.1:n.1283del

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