SNP Links for Gene (Select 101927129) - SNP

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Select item 14915771241.

rs1491577124 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>-,CTCT [Show Flanks]
Chromosome:: 15:93978551 (GRCh38)
15:94521780 (GRCh37)
Canonical SPDI:: NC_000015.10:93978549:TCT:T,NC_000015.10:93978549:TCT:TCTCT
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TCTCT=0./0 (ALFA)
HGVS:: NC_000015.10:g.93978551_93978552del, NC_000015.10:g.93978551_93978552dup, NC_000015.9:g.94521780_94521781del, NC_000015.9:g.94521780_94521781dup

Select item 14915022472.

rs1491502247 has merged into rs1361628912 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCCC>-,CC,CCC,CCCCC [Show Flanks]
Chromosome:: 15:93978536 (GRCh38)
15:94521765 (GRCh37)
Canonical SPDI:: NC_000015.10:93978533:CCCCCC:CC,NC_000015.10:93978533:CCCCCC:CCCC,NC_000015.10:93978533:CCCCCC:CCCCC,NC_000015.10:93978533:CCCCCC:CCCCCCC
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: CCCCC=0./0 (ALFA)
-=0.000008/1 (GnomAD)
HGVS:: NC_000015.10:g.93978536_93978539del, NC_000015.10:g.93978538_93978539del, NC_000015.10:g.93978539del, NC_000015.10:g.93978539dup, NC_000015.9:g.94521765_94521768del, NC_000015.9:g.94521767_94521768del, NC_000015.9:g.94521768del, NC_000015.9:g.94521768dup

Select item 14914175433.

rs1491417543 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: 15:93935544 (GRCh38)
15:94478773 (GRCh37)
Canonical SPDI:: NC_000015.10:93935543:AG:
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.93935544_93935545del, NC_000015.9:g.94478773_94478774del

Select item 14913964854.

rs1491396485 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 15:93961007 (GRCh38)
15:94504236 (GRCh37)
Canonical SPDI:: NC_000015.10:93961006:AT:
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.93961007_93961008del, NC_000015.9:g.94504236_94504237del

Select item 14913746805.

rs1491374680 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 15:93978610 (GRCh38)
15:94521839 (GRCh37)
Canonical SPDI:: NC_000015.10:93978608:TCT:T
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.93978610_93978611del, NC_000015.9:g.94521839_94521840del

Select item 14913544606.

rs1491354460 has merged into rs11315060 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAA>-,AA,AAA,AAAA,AAAAAA,AAAAAAA,AAAAAAAAA [Show Flanks]
Chromosome:: 15:93953833 (GRCh38)
15:94497062 (GRCh37)
Canonical SPDI:: NC_000015.10:93953823:AAAAAAAAAAAAAA:AAAAAAAAA,NC_000015.10:93953823:AAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000015.10:93953823:AAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:93953823:AAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:93953823:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:93953823:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000015.10:93953823:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAAA=0./0 (ALFA)
A=0.2951/1478 (1000Genomes)
HGVS:: NC_000015.10:g.93953833_93953837del, NC_000015.10:g.93953835_93953837del, NC_000015.10:g.93953836_93953837del, NC_000015.10:g.93953837del, NC_000015.10:g.93953837dup, NC_000015.10:g.93953836_93953837dup, NC_000015.10:g.93953834_93953837dup, NC_000015.9:g.94497062_94497066del, NC_000015.9:g.94497064_94497066del, NC_000015.9:g.94497065_94497066del, NC_000015.9:g.94497066del, NC_000015.9:g.94497066dup, NC_000015.9:g.94497065_94497066dup, NC_000015.9:g.94497063_94497066dup

Select item 14913358627.

rs1491335862 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:93953823 (GRCh38)
15:94497052 (GRCh37)
Canonical SPDI:: NC_000015.10:93953822:CA:
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.93953823_93953824del, NC_000015.9:g.94497052_94497053del

Select item 14912479578.

rs1491247957 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ACTT [Show Flanks]
Chromosome:: 15:93978550 (GRCh38)
15:94521780 (GRCh37)
Canonical SPDI:: NC_000015.10:93978550:CTT:CTTACTT
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTTACTT=0./0 (ALFA)
CTTA=0.000004/1 (TOPMED)
CTTA=0.000009/1 (GnomAD)
HGVS:: NC_000015.10:g.93978553_93978554insACTT, NC_000015.9:g.94521782_94521783insACTT

Select item 14912079109.

rs1491207910 [Homo sapiens]

Variant type:: INS
Alleles:: ->TTCTTC,TTCTTCCTTC [Show Flanks]
Chromosome:: 15:93978609 (GRCh38)
15:94521839 (GRCh37)
Canonical SPDI:: NC_000015.10:93978609::TTCTTC,NC_000015.10:93978609::TTCTTCCTTC
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TTCTTCCTTC=0./0 (ALFA)
HGVS:: NC_000015.10:g.93978609_93978610insTTCTTC, NC_000015.10:g.93978609_93978610insTTCTTCCTTC, NC_000015.9:g.94521838_94521839insTTCTTC, NC_000015.9:g.94521838_94521839insTTCTTCCTTC

Select item 149116585010.

rs1491165850 has merged into rs869294090 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 15:93935531 (GRCh38)
15:94478760 (GRCh37)
Canonical SPDI:: NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:93935520:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.027372/15 (NorthernSweden)
HGVS:: NC_000015.10:g.93935531_93935544del, NC_000015.10:g.93935532_93935544del, NC_000015.10:g.93935533_93935544del, NC_000015.10:g.93935534_93935544del, NC_000015.10:g.93935535_93935544del, NC_000015.10:g.93935536_93935544del, NC_000015.10:g.93935537_93935544del, NC_000015.10:g.93935538_93935544del, NC_000015.10:g.93935539_93935544del, NC_000015.10:g.93935540_93935544del, NC_000015.10:g.93935541_93935544del, NC_000015.10:g.93935542_93935544del, NC_000015.10:g.93935543_93935544del, NC_000015.10:g.93935544del, NC_000015.10:g.93935544dup, NC_000015.10:g.93935543_93935544dup, NC_000015.10:g.93935542_93935544dup, NC_000015.10:g.93935541_93935544dup, NC_000015.10:g.93935540_93935544dup, NC_000015.10:g.93935539_93935544dup, NC_000015.9:g.94478760_94478773del, NC_000015.9:g.94478761_94478773del, NC_000015.9:g.94478762_94478773del, NC_000015.9:g.94478763_94478773del, NC_000015.9:g.94478764_94478773del, NC_000015.9:g.94478765_94478773del, NC_000015.9:g.94478766_94478773del, NC_000015.9:g.94478767_94478773del, NC_000015.9:g.94478768_94478773del, NC_000015.9:g.94478769_94478773del, NC_000015.9:g.94478770_94478773del, NC_000015.9:g.94478771_94478773del, NC_000015.9:g.94478772_94478773del, NC_000015.9:g.94478773del, NC_000015.9:g.94478773dup, NC_000015.9:g.94478772_94478773dup, NC_000015.9:g.94478771_94478773dup, NC_000015.9:g.94478770_94478773dup, NC_000015.9:g.94478769_94478773dup, NC_000015.9:g.94478768_94478773dup

Select item 149116165611.

rs1491161656 [Homo sapiens]

Variant type:: SNV:
Alleles:: TC>-
Chromosome:: no mapping
Canonical SPDI:

Select item 149115092512.

rs1491150925 [Homo sapiens]

Variant type:: INS
Alleles:: ->T [Show Flanks]
Chromosome:: 15:93935544 (GRCh38)
15:94478774 (GRCh37)
Canonical SPDI:: NC_000015.10:93935544::T
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.93935544_93935545insT, NC_000015.9:g.94478773_94478774insT

Select item 149109049013.

rs1491090490 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:93935520 (GRCh38)
15:94478749 (GRCh37)
Canonical SPDI:: NC_000015.10:93935519:CA:
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00017/2 (ALFA)
-=0.00029/8 (TOMMO)
HGVS:: NC_000015.10:g.93935520_93935521del, NC_000015.9:g.94478749_94478750del

Select item 149108868114.

rs1491088681 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->CC
Chromosome:: no mapping
Canonical SPDI:

Select item 149107042615.

rs1491070426 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 15:93940292 (GRCh38)
15:94483521 (GRCh37)
Canonical SPDI:: NC_000015.10:93940290:AGA:A
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
-=0.00015/4 (TOMMO)
HGVS:: NC_000015.10:g.93940292_93940293del, NC_000015.9:g.94483521_94483522del

Select item 149103953316.

rs1491039533 has merged into rs1001839620 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAGAGAGA>-,GAGA,GAGAGA,GAGAGAGAGA,GAGAGAGAGAGA [Show Flanks]
Chromosome:: 15:93967372 (GRCh38)
15:94510601 (GRCh37)
Canonical SPDI:: NC_000015.10:93967361:GAGAGAGAGAGAGAGAGA:GAGAGAGAGA,NC_000015.10:93967361:GAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGA,NC_000015.10:93967361:GAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGA,NC_000015.10:93967361:GAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGA,NC_000015.10:93967361:GAGAGAGAGAGAGAGAGA:GAGAGAGAGAGAGAGAGAGAGA
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GAGAGAGAGAGAGAGA=0./0 (ALFA)
HGVS:: NC_000015.10:g.93967362GA[5], NC_000015.10:g.93967362GA[7], NC_000015.10:g.93967362GA[8], NC_000015.10:g.93967362GA[10], NC_000015.10:g.93967362GA[11], NC_000015.9:g.94510591GA[5], NC_000015.9:g.94510591GA[7], NC_000015.9:g.94510591GA[8], NC_000015.9:g.94510591GA[10], NC_000015.9:g.94510591GA[11]

Select item 149098058517.

rs1490980585 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:93952879 (GRCh38)
15:94496108 (GRCh37)
Canonical SPDI:: NC_000015.10:93952878:G:T
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.00007/1 (ALFA)
HGVS:: NC_000015.10:g.93952879G>T, NC_000015.9:g.94496108G>T

Select item 149095763618.

rs1490957636 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:93978934 (GRCh38)
15:94522163 (GRCh37)
Canonical SPDI:: NC_000015.10:93978933:T:C
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.93978934T>C, NC_000015.9:g.94522163T>C

Select item 149093873619.

rs1490938736 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:93964827 (GRCh38)
15:94508056 (GRCh37)
Canonical SPDI:: NC_000015.10:93964826:C:T
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.93964827C>T, NC_000015.9:g.94508056C>T

Select item 149086811820.

rs1490868118 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:93963818 (GRCh38)
15:94507047 (GRCh37)
Canonical SPDI:: NC_000015.10:93963817:G:A,NC_000015.10:93963817:G:T
Gene:: LINC01581 (Varview), LINC01580 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000023/6 (TOPMED)
HGVS:: NC_000015.10:g.93963818G>A, NC_000015.10:g.93963818G>T, NC_000015.9:g.94507047G>A, NC_000015.9:g.94507047G>T

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