SNP Links for Gene (Select 101927171) - SNP

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Items: 1 to 20 of 1185

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Select item 14908529041.

rs1490852904 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:53626734 (GRCh38)
6:53491532 (GRCh37)
Canonical SPDI:: NC_000006.12:53626733:T:C
Gene:: LINC01564 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.53626734T>C, NC_000006.11:g.53491532T>C

Select item 14895017072.

rs1489501707 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:53628030 (GRCh38)
6:53492828 (GRCh37)
Canonical SPDI:: NC_000006.12:53628029:A:G
Gene:: LINC01564 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000006.12:g.53628030A>G, NC_000006.11:g.53492828A>G

Select item 14891026673.

rs1489102667 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 6:53631396 (GRCh38)
6:53496194 (GRCh37)
Canonical SPDI:: NC_000006.12:53631395:A:T
Gene:: LINC01564 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.53631396A>T, NC_000006.11:g.53496194A>T

Select item 14887772624.

rs1488777262 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 6:53627272 (GRCh38)
6:53492070 (GRCh37)
Canonical SPDI:: NC_000006.12:53627271:A:T
Gene:: LINC01564 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.53627272A>T, NC_000006.11:g.53492070A>T

Select item 14887272735.

rs1488727273 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:53629584 (GRCh38)
6:53494382 (GRCh37)
Canonical SPDI:: NC_000006.12:53629583:A:G
Gene:: LINC01564 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.53629584A>G, NC_000006.11:g.53494382A>G

Select item 14872145936.

rs1487214593 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 6:53629137 (GRCh38)
6:53493935 (GRCh37)
Canonical SPDI:: NC_000006.12:53629136:C:G,NC_000006.12:53629136:C:T
Gene:: LINC01564 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000054/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
T=0.000223/1 (Estonian)
HGVS:: NC_000006.12:g.53629137C>G, NC_000006.12:g.53629137C>T, NC_000006.11:g.53493935C>G, NC_000006.11:g.53493935C>T

Select item 14869919967.

rs1486991996 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 6:53628240 (GRCh38)
6:53493038 (GRCh37)
Canonical SPDI:: NC_000006.12:53628239:G:A,NC_000006.12:53628239:G:T
Gene:: LINC01564 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.53628240G>A, NC_000006.12:g.53628240G>T, NC_000006.11:g.53493038G>A, NC_000006.11:g.53493038G>T

Select item 14865615238.

rs1486561523 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 6:53631333 (GRCh38)
6:53496131 (GRCh37)
Canonical SPDI:: NC_000006.12:53631332:G:C,NC_000006.12:53631332:G:T
Gene:: LINC01564 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000006.12:g.53631333G>C, NC_000006.12:g.53631333G>T, NC_000006.11:g.53496131G>C, NC_000006.11:g.53496131G>T, NR_125841.1:n.505G>C, NR_125841.1:n.505G>T

Select item 14862363449.

rs1486236344 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:53630210 (GRCh38)
6:53495008 (GRCh37)
Canonical SPDI:: NC_000006.12:53630209:G:A
Gene:: LINC01564 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.53630210G>A, NC_000006.11:g.53495008G>A

Select item 148530222810.

rs1485302228 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 6:53627790 (GRCh38)
6:53492588 (GRCh37)
Canonical SPDI:: NC_000006.12:53627789:G:
Gene:: LINC01564 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.53627790del, NC_000006.11:g.53492588del

Select item 148464769611.

rs1484647696 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:53627181 (GRCh38)
6:53491979 (GRCh37)
Canonical SPDI:: NC_000006.12:53627180:G:T
Gene:: LINC01564 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.53627181G>T, NC_000006.11:g.53491979G>T

Select item 148398544612.

rs1483985446 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:53628147 (GRCh38)
6:53492945 (GRCh37)
Canonical SPDI:: NC_000006.12:53628146:T:C
Gene:: LINC01564 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000019/5 (TOPMED)
HGVS:: NC_000006.12:g.53628147T>C, NC_000006.11:g.53492945T>C

Select item 148149528013.

rs1481495280 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:53626886 (GRCh38)
6:53491684 (GRCh37)
Canonical SPDI:: NC_000006.12:53626885:C:T
Gene:: LINC01564 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.53626886C>T, NC_000006.11:g.53491684C>T

Select item 148008728514.

rs1480087285 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:53626788 (GRCh38)
6:53491586 (GRCh37)
Canonical SPDI:: NC_000006.12:53626787:T:C
Gene:: LINC01564 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.53626788T>C, NC_000006.11:g.53491586T>C

Select item 148005490915.

rs1480054909 [Homo sapiens]

Variant type:: DELINS
Alleles:: TACC>- [Show Flanks]
Chromosome:: 6:53629926 (GRCh38)
6:53494724 (GRCh37)
Canonical SPDI:: NC_000006.12:53629923:CCTACC:CC
Gene:: LINC01564 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
HGVS:: NC_000006.12:g.53629926_53629929del, NC_000006.11:g.53494724_53494727del

Select item 147991535216.

rs1479915352 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:53626901 (GRCh38)
6:53491699 (GRCh37)
Canonical SPDI:: NC_000006.12:53626900:C:G
Gene:: LINC01564 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000106/2 (TOMMO)
HGVS:: NC_000006.12:g.53626901C>G, NC_000006.11:g.53491699C>G

Select item 147986179417.

rs1479861794 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 6:53627385 (GRCh38)
6:53492183 (GRCh37)
Canonical SPDI:: NC_000006.12:53627384:A:
Gene:: LINC01564 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.53627385del, NC_000006.11:g.53492183del

Select item 147849911718.

rs1478499117 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 6:53630490 (GRCh38)
6:53495288 (GRCh37)
Canonical SPDI:: NC_000006.12:53630489:A:C,NC_000006.12:53630489:A:T
Gene:: LINC01564 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0./0 (GnomAD)
T=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.53630490A>C, NC_000006.12:g.53630490A>T, NC_000006.11:g.53495288A>C, NC_000006.11:g.53495288A>T

Select item 147819107919.

rs1478191079 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:53627843 (GRCh38)
6:53492641 (GRCh37)
Canonical SPDI:: NC_000006.12:53627842:A:G
Gene:: LINC01564 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (GnomAD)
G=0.000011/3 (TOPMED)
G=0.000468/3 (1000Genomes)
HGVS:: NC_000006.12:g.53627843A>G, NC_000006.11:g.53492641A>G

Select item 147804613420.

rs1478046134 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:53627497 (GRCh38)
6:53492295 (GRCh37)
Canonical SPDI:: NC_000006.12:53627496:C:A
Gene:: LINC01564 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.53627497C>A, NC_000006.11:g.53492295C>A

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