SNP Links for Gene (Select 101927272) - SNP

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Items: 1 to 20 of 1124

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Select item 14912252321.

rs1491225232 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 16:50671141 (GRCh38)
16:50705052 (GRCh37)
Canonical SPDI:: NC_000016.10:50671140:AT:
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: downstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000008/1 (GnomAD)
HGVS:: NC_000016.10:g.50671141_50671142del, NC_000016.9:g.50705052_50705053del

Select item 14912043442.

rs1491204344 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TTTT [Show Flanks]
Chromosome:: 16:50671141 (GRCh38)
16:50705053 (GRCh37)
Canonical SPDI:: NC_000016.10:50671141:TTT:TTTTTTT
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: downstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TTTTTTT=0.0009/4 (ALFA)
TTTT=0.0004/2 (Estonian)
HGVS:: NC_000016.10:g.50671144_50671145insTTTT, NC_000016.9:g.50705055_50705056insTTTT

Select item 14909343903.

rs1490934390 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:50667347 (GRCh38)
16:50701258 (GRCh37)
Canonical SPDI:: NC_000016.10:50667346:C:T
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.50667347C>T, NC_000016.9:g.50701258C>T, NM_153337.3:c.*1694G>A, NM_153337.2:c.*1694G>A, NM_001144972.2:c.*668G>A, NM_001144972.1:c.*668G>A

Select item 14904508534.

rs1490450853 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:50668315 (GRCh38)
16:50702226 (GRCh37)
Canonical SPDI:: NC_000016.10:50668314:T:C
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,3_prime_UTR_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.50668315T>C, NC_000016.9:g.50702226T>C, NM_153337.3:c.*726A>G, NM_153337.2:c.*726A>G

Select item 14899601055.

rs1489960105 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:50669646 (GRCh38)
16:50703557 (GRCh37)
Canonical SPDI:: NC_000016.10:50669645:C:T
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: T=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.50669646C>T, NC_000016.9:g.50703557C>T

Select item 14899052606.

rs1489905260 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:50667174 (GRCh38)
16:50701085 (GRCh37)
Canonical SPDI:: NC_000016.10:50667173:A:G
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.50667174A>G, NC_000016.9:g.50701085A>G, NM_153337.3:c.*1867T>C, NM_153337.2:c.*1867T>C, NM_001144972.2:c.*841T>C, NM_001144972.1:c.*841T>C

Select item 14891689987.

rs1489168998 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 16:50671994 (GRCh38)
16:50705905 (GRCh37)
Canonical SPDI:: NC_000016.10:50671993:T:G
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: 3_prime_UTR_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.50671994T>G, NC_000016.9:g.50705905T>G, NM_182854.4:c.*1412A>C, NM_182854.3:c.*1412A>C

Select item 14887530588.

rs1488753058 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:50668130 (GRCh38)
16:50702041 (GRCh37)
Canonical SPDI:: NC_000016.10:50668129:A:C
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,3_prime_UTR_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000016.10:g.50668130A>C, NC_000016.9:g.50702041A>C, NM_153337.3:c.*911T>G, NM_153337.2:c.*911T>G

Select item 14881947399.

rs1488194739 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:50668619 (GRCh38)
16:50702530 (GRCh37)
Canonical SPDI:: NC_000016.10:50668618:G:A
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,3_prime_UTR_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.50668619G>A, NC_000016.9:g.50702530G>A, NM_153337.3:c.*422C>T, NM_153337.2:c.*422C>T

Select item 148815885910.

rs1488158859 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 16:50671752 (GRCh38)
16:50705663 (GRCh37)
Canonical SPDI:: NC_000016.10:50671751:A:
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: 3_prime_UTR_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000285/4 (ALFA)
-=0.000128/18 (GnomAD)
-=0.000128/34 (TOPMED)
HGVS:: NC_000016.10:g.50671752del, NC_000016.9:g.50705663del, NM_182854.4:c.*1654del, NM_182854.3:c.*1654del

Select item 148776845911.

rs1487768459 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:50671825 (GRCh38)
16:50705736 (GRCh37)
Canonical SPDI:: NC_000016.10:50671824:C:T
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: 3_prime_UTR_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.50671825C>T, NC_000016.9:g.50705736C>T, NM_182854.4:c.*1581G>A, NM_182854.3:c.*1581G>A

Select item 148625883312.

rs1486258833 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:50667035 (GRCh38)
16:50700946 (GRCh37)
Canonical SPDI:: NC_000016.10:50667034:A:C
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.50667035A>C, NC_000016.9:g.50700946A>C, NM_153337.3:c.*2006T>G, NM_153337.2:c.*2006T>G, NM_001144972.2:c.*980T>G, NM_001144972.1:c.*980T>G

Select item 148587743213.

rs1485877432 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:50671244 (GRCh38)
16:50705155 (GRCh37)
Canonical SPDI:: NC_000016.10:50671243:G:C
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.50671244G>C, NC_000016.9:g.50705155G>C, NR_110908.1:n.714G>C

Select item 148562533514.

rs1485625335 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 16:50669301 (GRCh38)
16:50703212 (GRCh37)
Canonical SPDI:: NC_000016.10:50669300:T:A
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.50669301T>A, NC_000016.9:g.50703212T>A

Select item 148421133915.

rs1484211339 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:50669319 (GRCh38)
16:50703230 (GRCh37)
Canonical SPDI:: NC_000016.10:50669318:A:C
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.50669319A>C, NC_000016.9:g.50703230A>C

Select item 148414247016.

rs1484142470 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:50668165 (GRCh38)
16:50702076 (GRCh37)
Canonical SPDI:: NC_000016.10:50668164:A:C
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000016.10:g.50668165A>C, NC_000016.9:g.50702076A>C, NM_153337.3:c.*876T>G, NM_153337.2:c.*876T>G

Select item 148366565117.

rs1483665651 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:50671373 (GRCh38)
16:50705284 (GRCh37)
Canonical SPDI:: NC_000016.10:50671372:A:G
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.50671373A>G, NC_000016.9:g.50705284A>G, NR_110908.1:n.843A>G

Select item 148198835218.

rs1481988352 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 16:50671077 (GRCh38)
16:50704988 (GRCh37)
Canonical SPDI:: NC_000016.10:50671076:C:A,NC_000016.10:50671076:C:T
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.50671077C>A, NC_000016.10:g.50671077C>T, NC_000016.9:g.50704988C>A, NC_000016.9:g.50704988C>T

Select item 148159024619.

rs1481590246 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:50670737 (GRCh38)
16:50704648 (GRCh37)
Canonical SPDI:: NC_000016.10:50670736:G:A
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.50670737G>A, NC_000016.9:g.50704648G>A, NR_110908.1:n.361G>A

Select item 147972971820.

rs1479729718 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:50669045 (GRCh38)
16:50702956 (GRCh37)
Canonical SPDI:: NC_000016.10:50669044:A:G
Gene:: SNX20 (Varview), LOC101927272 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,coding_sequence_variant,missense_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.50669045A>G, NC_000016.9:g.50702956A>G, NM_153337.3:c.386T>C, NM_153337.2:c.386T>C, NR_110908.1:n.191A>G, NP_699168.1:p.Leu129Pro

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