SNP Links for Gene (Select 101927360) - SNP

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Items: 1 to 20 of 5882

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Select item 14913708221.

rs1491370822 has merged into rs35789300 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA [Show Flanks]
Chromosome:: 2:104500179 (GRCh38)
2:105116637 (GRCh37)
Canonical SPDI:: NC_000002.12:104500170:AAAAAAAAAA:AAAAAAAA,NC_000002.12:104500170:AAAAAAAAAA:AAAAAAAAA,NC_000002.12:104500170:AAAAAAAAAA:AAAAAAAAAAA,NC_000002.12:104500170:AAAAAAAAAA:AAAAAAAAAAAA
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAA=0./0 (ALFA)
-=0.00333/2 (NorthernSweden)
HGVS:: NC_000002.12:g.104500179_104500180del, NC_000002.12:g.104500180del, NC_000002.12:g.104500180dup, NC_000002.12:g.104500179_104500180dup, NC_000002.11:g.105116637_105116638del, NC_000002.11:g.105116638del, NC_000002.11:g.105116638dup, NC_000002.11:g.105116637_105116638dup

Select item 14913242222.

rs1491324222 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 2:104500171 (GRCh38)
2:105116630 (GRCh37)
Canonical SPDI:: NC_000002.12:104500171::C
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.003456/41 (ALFA)
C=0.005254/711 (GnomAD)
HGVS:: NC_000002.12:g.104500171_104500172insC, NC_000002.11:g.105116629_105116630insC

Select item 14910301863.

rs1491030186 has merged into rs34894789 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTT>-,T,TT,TTTT,TTTTT,TTTTTT,TTTTTTTTT [Show Flanks]
Chromosome:: 2:104493391 (GRCh38)
2:105109849 (GRCh37)
Canonical SPDI:: NC_000002.12:104493379:TTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000002.12:104493379:TTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000002.12:104493379:TTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000002.12:104493379:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000002.12:104493379:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000002.12:104493379:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000002.12:104493379:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTT=0./0 (ALFA)
T=0.0507/29 (NorthernSweden)
HGVS:: NC_000002.12:g.104493391_104493393del, NC_000002.12:g.104493392_104493393del, NC_000002.12:g.104493393del, NC_000002.12:g.104493393dup, NC_000002.12:g.104493392_104493393dup, NC_000002.12:g.104493391_104493393dup, NC_000002.12:g.104493388_104493393dup, NC_000002.11:g.105109849_105109851del, NC_000002.11:g.105109850_105109851del, NC_000002.11:g.105109851del, NC_000002.11:g.105109851dup, NC_000002.11:g.105109850_105109851dup, NC_000002.11:g.105109849_105109851dup, NC_000002.11:g.105109846_105109851dup

Select item 14906814704.

rs1490681470 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:104497657 (GRCh38)
2:105114115 (GRCh37)
Canonical SPDI:: NC_000002.12:104497656:A:G
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0./0 (GnomAD)
G=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.104497657A>G, NC_000002.11:g.105114115A>G

Select item 14906464925.

rs1490646492 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:104497179 (GRCh38)
2:105113637 (GRCh37)
Canonical SPDI:: NC_000002.12:104497178:T:G
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.104497179T>G, NC_000002.11:g.105113637T>G

Select item 14906346026.

rs1490634602 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>A
Chromosome:: no mapping
Canonical SPDI:

Select item 14905571877.

rs1490557187 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:104511671 (GRCh38)
2:105128129 (GRCh37)
Canonical SPDI:: NC_000002.12:104511670:C:T
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.104511671C>T, NC_000002.11:g.105128129C>T

Select item 14905321258.

rs1490532125 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 2:104510822 (GRCh38)
2:105127280 (GRCh37)
Canonical SPDI:: NC_000002.12:104510821:A:T
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.104510822A>T, NC_000002.11:g.105127280A>T

Select item 14904789089.

rs1490478908 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 2:104505130 (GRCh38)
2:105121588 (GRCh37)
Canonical SPDI:: NC_000002.12:104505129:C:A
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.104505130C>A, NC_000002.11:g.105121588C>A, NR_110113.1:n.236G>T

Select item 149046361410.

rs1490463614 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:104505237 (GRCh38)
2:105121695 (GRCh37)
Canonical SPDI:: NC_000002.12:104505236:T:G
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.104505237T>G, NC_000002.11:g.105121695T>G

Select item 149005342911.

rs1490053429 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:104490061 (GRCh38)
2:105106519 (GRCh37)
Canonical SPDI:: NC_000002.12:104490060:A:G
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.104490061A>G, NC_000002.11:g.105106519A>G

Select item 149002795012.

rs1490027950 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:104512132 (GRCh38)
2:105128590 (GRCh37)
Canonical SPDI:: NC_000002.12:104512131:G:A
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.104512132G>A, NC_000002.11:g.105128590G>A, NR_015399.1:n.880G>A

Select item 148990546613.

rs1489905466 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 2:104491378 (GRCh38)
2:105107836 (GRCh37)
Canonical SPDI:: NC_000002.12:104491377:T:A,NC_000002.12:104491377:T:G
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.104491378T>A, NC_000002.12:g.104491378T>G, NC_000002.11:g.105107836T>A, NC_000002.11:g.105107836T>G

Select item 148971911614.

rs1489719116 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:104499550 (GRCh38)
2:105116008 (GRCh37)
Canonical SPDI:: NC_000002.12:104499549:G:A
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000083/22 (TOPMED)
A=0.000546/1 (Korea1K)
HGVS:: NC_000002.12:g.104499550G>A, NC_000002.11:g.105116008G>A

Select item 148960570415.

rs1489605704 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 2:104498551 (GRCh38)
2:105115009 (GRCh37)
Canonical SPDI:: NC_000002.12:104498550:C:A,NC_000002.12:104498550:C:T
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000002.12:g.104498551C>A, NC_000002.12:g.104498551C>T, NC_000002.11:g.105115009C>A, NC_000002.11:g.105115009C>T

Select item 148939114616.

rs1489391146 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:104500119 (GRCh38)
2:105116577 (GRCh37)
Canonical SPDI:: NC_000002.12:104500118:A:G
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.104500119A>G, NC_000002.11:g.105116577A>G

Select item 148904220717.

rs1489042207 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:104496092 (GRCh38)
2:105112550 (GRCh37)
Canonical SPDI:: NC_000002.12:104496091:G:C
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.104496092G>C, NC_000002.11:g.105112550G>C

Select item 148892668218.

rs1488926682 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:104506423 (GRCh38)
2:105122881 (GRCh37)
Canonical SPDI:: NC_000002.12:104506422:A:C
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.00051/6 (ALFA)
HGVS:: NC_000002.12:g.104506423A>C, NC_000002.11:g.105122881A>C

Select item 148888293019.

rs1488882930 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 2:104506379 (GRCh38)
2:105122837 (GRCh37)
Canonical SPDI:: NC_000002.12:104506378:G:A,NC_000002.12:104506378:G:T
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000002.12:g.104506379G>A, NC_000002.12:g.104506379G>T, NC_000002.11:g.105122837G>A, NC_000002.11:g.105122837G>T

Select item 148885137920.

rs1488851379 has merged into rs139941920 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGATAGATAGATAGATAGAT>-,AGAT,AGATAGAT,AGATAGATAGAT,AGATAGATAGATAGAT,AGATAGATAGATAGATAGATAGAT,AGATAGATAGATAGATAGATAGATAGAT,AGATAGATAGATAGATAGATAGATAGATAGAT [Show Flanks]
Chromosome:: 2:104492588 (GRCh38)
2:105109046 (GRCh37)
Canonical SPDI:: NC_000002.12:104492564:GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT:GATAGATAGATAGATAGATAGAT,NC_000002.12:104492564:GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT:GATAGATAGATAGATAGATAGATAGAT,NC_000002.12:104492564:GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT:GATAGATAGATAGATAGATAGATAGATAGAT,NC_000002.12:104492564:GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT:GATAGATAGATAGATAGATAGATAGATAGATAGAT,NC_000002.12:104492564:GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT:GATAGATAGATAGATAGATAGATAGATAGATAGATAGAT,NC_000002.12:104492564:GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT:GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT,NC_000002.12:104492564:GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT:GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT,NC_000002.12:104492564:GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT:GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT
Gene:: LINC01102 (Varview), LINC01103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GATAGATAGATAGATAGATAGATAGAT=0./0 (ALFA)
GATA=0.4583/2295 (1000Genomes)
HGVS:: NC_000002.12:g.104492568AGAT[5], NC_000002.12:g.104492568AGAT[6], NC_000002.12:g.104492568AGAT[7], NC_000002.12:g.104492568AGAT[8], NC_000002.12:g.104492568AGAT[9], NC_000002.12:g.104492568AGAT[11], NC_000002.12:g.104492568AGAT[12], NC_000002.12:g.104492568AGAT[13], NC_000002.11:g.105109026AGAT[5], NC_000002.11:g.105109026AGAT[6], NC_000002.11:g.105109026AGAT[7], NC_000002.11:g.105109026AGAT[8], NC_000002.11:g.105109026AGAT[9], NC_000002.11:g.105109026AGAT[11], NC_000002.11:g.105109026AGAT[12], NC_000002.11:g.105109026AGAT[13]

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