SNP Links for Gene (Select 101927362) - SNP

Links from Gene

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Select item 14896481291.

rs1489648129 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 2:543910 (GRCh38)
2:543910 (GRCh37)
Canonical SPDI:: NC_000002.12:543909:G:A,NC_000002.12:543909:G:T
Gene:: LINC01875 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.003794/45 (ALFA)
A=0.000008/1 (GnomAD)
A=0.000468/3 (1000Genomes)
A=0.000547/1 (Korea1K)
A=0.000778/13 (TOMMO)
A=0.040972/118 (KOREAN)
HGVS:: NC_000002.12:g.543910G>A, NC_000002.12:g.543910G>T, NC_000002.11:g.543910G>A, NC_000002.11:g.543910G>T

Select item 14886672622.

rs1488667262 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:544768 (GRCh38)
2:544768 (GRCh37)
Canonical SPDI:: NC_000002.12:544767:T:G
Gene:: LINC01875 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.544768T>G, NC_000002.11:g.544768T>G

Select item 14880310433.

rs1488031043 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:547027 (GRCh38)
2:547027 (GRCh37)
Canonical SPDI:: NC_000002.12:547026:T:G
Gene:: LINC01875 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.547027T>G, NC_000002.11:g.547027T>G

Select item 14877892254.

rs1487789225 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C,G [Show Flanks]
Chromosome:: 2:543823 (GRCh38)
2:543823 (GRCh37)
Canonical SPDI:: NC_000002.12:543822:T:A,NC_000002.12:543822:T:C,NC_000002.12:543822:T:G
Gene:: LINC01875 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.00554/3 (NorthernSweden)
A=0.01226/81 (TOMMO)
A=0.03139/72 (KOREAN)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000002.12:g.543823T>A, NC_000002.12:g.543823T>C, NC_000002.12:g.543823T>G, NC_000002.11:g.543823T>A, NC_000002.11:g.543823T>C, NC_000002.11:g.543823T>G

Select item 14875523605.

rs1487552360 [Homo sapiens]

Variant type:: DELINS
Alleles:: CGG>- [Show Flanks]
Chromosome:: 2:546353 (GRCh38)
2:546353 (GRCh37)
Canonical SPDI:: NC_000002.12:546350:GGCGG:GG
Gene:: LINC01875 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.546353_546355del, NC_000002.11:g.546353_546355del, NR_146470.1:n.346_348del

Select item 14874660006.

rs1487466000 [Homo sapiens]

Variant type:: DELINS
Alleles:: TC>- [Show Flanks]
Chromosome:: 2:546561 (GRCh38)
2:546561 (GRCh37)
Canonical SPDI:: NC_000002.12:546559:CTC:C
Gene:: LINC01875 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.546561_546562del, NC_000002.11:g.546561_546562del, NR_146470.1:n.554_555del

Select item 14866985847.

rs1486698584 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:546811 (GRCh38)
2:546811 (GRCh37)
Canonical SPDI:: NC_000002.12:546810:G:A
Gene:: LINC01875 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.546811G>A, NC_000002.11:g.546811G>A

Select item 14861843378.

rs1486184337 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 2:546841 (GRCh38)
2:546841 (GRCh37)
Canonical SPDI:: NC_000002.12:546840:C:
Gene:: LINC01875 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000142/2 (ALFA)
-=0.000008/2 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.546841del, NC_000002.11:g.546841del

Select item 14858133319.

rs1485813331 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:546678 (GRCh38)
2:546678 (GRCh37)
Canonical SPDI:: NC_000002.12:546677:A:G
Gene:: LINC01875 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.546678A>G, NC_000002.11:g.546678A>G

Select item 148439469810.

rs1484394698 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 2:544495 (GRCh38)
2:544495 (GRCh37)
Canonical SPDI:: NC_000002.12:544494:A:C,NC_000002.12:544494:A:G
Gene:: LINC01875 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.544495A>C, NC_000002.12:g.544495A>G, NC_000002.11:g.544495A>C, NC_000002.11:g.544495A>G

Select item 148393740011.

rs1483937400 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 2:545083 (GRCh38)
2:545083 (GRCh37)
Canonical SPDI:: NC_000002.12:545082:T:A,NC_000002.12:545082:T:C
Gene:: LINC01875 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.545083T>A, NC_000002.12:g.545083T>C, NC_000002.11:g.545083T>A, NC_000002.11:g.545083T>C

Select item 148361162912.

rs1483611629 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:544602 (GRCh38)
2:544602 (GRCh37)
Canonical SPDI:: NC_000002.12:544601:C:T
Gene:: LINC01875 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000021/3 (GnomAD)
T=0.000342/1 (KOREAN)
T=0.000389/7 (TOMMO)
HGVS:: NC_000002.12:g.544602C>T, NC_000002.11:g.544602C>T

Select item 148198503213.

rs1481985032 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:544129 (GRCh38)
2:544129 (GRCh37)
Canonical SPDI:: NC_000002.12:544128:T:C
Gene:: LINC01875 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.544129T>C, NC_000002.11:g.544129T>C

Select item 147940998914.

rs1479409989 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:546045 (GRCh38)
2:546045 (GRCh37)
Canonical SPDI:: NC_000002.12:546044:C:T
Gene:: LINC01875 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.546045C>T, NC_000002.11:g.546045C>T

Select item 147909316215.

rs1479093162 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:547144 (GRCh38)
2:547144 (GRCh37)
Canonical SPDI:: NC_000002.12:547143:G:A
Gene:: LINC01875 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.547144G>A, NC_000002.11:g.547144G>A

Select item 147906429416.

rs1479064294 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:543829 (GRCh38)
2:543829 (GRCh37)
Canonical SPDI:: NC_000002.12:543828:G:A
Gene:: LINC01875 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by cluster
MAF:: A=0.0003/16 (GnomAD)
A=0.00167/1 (NorthernSweden)
A=0.00565/83 (TOMMO)
A=0.00835/20 (KOREAN)
HGVS:: NC_000002.12:g.543829G>A, NC_000002.11:g.543829G>A

Select item 147768376517.

rs1477683765 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:544831 (GRCh38)
2:544831 (GRCh37)
Canonical SPDI:: NC_000002.12:544830:C:T
Gene:: LINC01875 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000036/5 (GnomAD)
T=0.000042/11 (TOPMED)
T=0.000684/2 (KOREAN)
HGVS:: NC_000002.12:g.544831C>T, NC_000002.11:g.544831C>T

Select item 147664910618.

rs1476649106 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:546338 (GRCh38)
2:546338 (GRCh37)
Canonical SPDI:: NC_000002.12:546337:T:G
Gene:: LINC01875 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.546338T>G, NC_000002.11:g.546338T>G, NR_146470.1:n.331T>G

Select item 147611999319.

rs1476119993 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:546556 (GRCh38)
2:546556 (GRCh37)
Canonical SPDI:: NC_000002.12:546555:G:A
Gene:: LINC01875 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.546556G>A, NC_000002.11:g.546556G>A, NR_146470.1:n.549G>A

Select item 147550460820.

rs1475504608 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:546027 (GRCh38)
2:546027 (GRCh37)
Canonical SPDI:: NC_000002.12:546026:C:T
Gene:: LINC01875 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.546027C>T, NC_000002.11:g.546027C>T, NR_146470.1:n.223C>T

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