SNP Links for Gene (Select 101927410) - SNP

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Select item 14910786701.

rs1491078670 has merged into rs34141082 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA [Show Flanks]
Chromosome:: 18:10667010 (GRCh38)
18:10667007 (GRCh37)
Canonical SPDI:: NC_000018.10:10667000:AAAAAAAAAAA:AAAAAAAAA,NC_000018.10:10667000:AAAAAAAAAAA:AAAAAAAAAA,NC_000018.10:10667000:AAAAAAAAAAA:AAAAAAAAAAAA,NC_000018.10:10667000:AAAAAAAAAAA:AAAAAAAAAAAAA
Gene:: LOC101927410 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAA=0./0 (ALFA)
A=0.1417/85 (NorthernSweden)
A=0.2087/774 (TWINSUK)
A=0.2154/215 (GoNL)
A=0.2237/862 (ALSPAC)
A=0.2282/418 (Korea1K)
A=0.2591/1273 (1000Genomes)
A=0.35/14 (GENOME_DK)
HGVS:: NC_000018.10:g.10667010_10667011del, NC_000018.10:g.10667011del, NC_000018.10:g.10667011dup, NC_000018.10:g.10667010_10667011dup, NC_000018.9:g.10667007_10667008del, NC_000018.9:g.10667008del, NC_000018.9:g.10667008dup, NC_000018.9:g.10667007_10667008dup

Select item 14908620062.

rs1490862006 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 18:10663887 (GRCh38)
18:10663884 (GRCh37)
Canonical SPDI:: NC_000018.10:10663886:A:T
Gene:: LOC101927410 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000018.10:g.10663887A>T, NC_000018.9:g.10663884A>T, NR_110777.1:n.566A>T

Select item 14900948373.

rs1490094837 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 18:10664251 (GRCh38)
18:10664248 (GRCh37)
Canonical SPDI:: NC_000018.10:10664250:A:G
Gene:: LOC101927410 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.10664251A>G, NC_000018.9:g.10664248A>G, NR_110777.1:n.930A>G

Select item 14896888664.

rs1489688866 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 18:10660334 (GRCh38)
18:10660331 (GRCh37)
Canonical SPDI:: NC_000018.10:10660333:C:T
Gene:: LOC101927410 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000026/7 (TOPMED)
HGVS:: NC_000018.10:g.10660334C>T, NC_000018.9:g.10660331C>T

Select item 14892900185.

rs1489290018 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 18:10660624 (GRCh38)
18:10660621 (GRCh37)
Canonical SPDI:: NC_000018.10:10660623:G:T
Gene:: LOC101927410 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.0002/1 (ALFA)
T=0.0002/1 (Estonian)
HGVS:: NC_000018.10:g.10660624G>T, NC_000018.9:g.10660621G>T

Select item 14890810756.

rs1489081075 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 18:10665970 (GRCh38)
18:10665967 (GRCh37)
Canonical SPDI:: NC_000018.10:10665969:A:C
Gene:: LOC101927410 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.10665970A>C, NC_000018.9:g.10665967A>C, NR_110777.1:n.2649A>C

Select item 14890508437.

rs1489050843 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 18:10666932 (GRCh38)
18:10666929 (GRCh37)
Canonical SPDI:: NC_000018.10:10666931:T:C
Gene:: LOC101927410 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.10666932T>C, NC_000018.9:g.10666929T>C

Select item 14890417838.

rs1489041783 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 18:10666509 (GRCh38)
18:10666506 (GRCh37)
Canonical SPDI:: NC_000018.10:10666508:G:C
Gene:: LOC101927410 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.10666509G>C, NC_000018.9:g.10666506G>C, NR_110777.1:n.3188G>C

Select item 14879539559.

rs1487953955 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 18:10665289 (GRCh38)
18:10665286 (GRCh37)
Canonical SPDI:: NC_000018.10:10665288:C:A,NC_000018.10:10665288:C:T
Gene:: LOC101927410 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000018.10:g.10665289C>A, NC_000018.10:g.10665289C>T, NC_000018.9:g.10665286C>A, NC_000018.9:g.10665286C>T, NR_110777.1:n.1968C>A, NR_110777.1:n.1968C>T

Select item 148734102110.

rs1487341021 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 18:10662891 (GRCh38)
18:10662888 (GRCh37)
Canonical SPDI:: NC_000018.10:10662890:TTTT:TTT
Gene:: LOC101927410 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TTT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.10662894del, NC_000018.9:g.10662891del

Select item 148720575811.

rs1487205758 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 18:10665025 (GRCh38)
18:10665022 (GRCh37)
Canonical SPDI:: NC_000018.10:10665024:C:G
Gene:: LOC101927410 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.10665025C>G, NC_000018.9:g.10665022C>G, NR_110777.1:n.1704C>G

Select item 148699513812.

rs1486995138 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 18:10664172 (GRCh38)
18:10664169 (GRCh37)
Canonical SPDI:: NC_000018.10:10664171:G:C
Gene:: LOC101927410 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.10664172G>C, NC_000018.9:g.10664169G>C, NR_110777.1:n.851G>C

Select item 148690684813.

rs1486906848 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 18:10660350 (GRCh38)
18:10660347 (GRCh37)
Canonical SPDI:: NC_000018.10:10660349:G:C
Gene:: LOC101927410 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.10660350G>C, NC_000018.9:g.10660347G>C

Select item 148687835514.

rs1486878355 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 18:10661253 (GRCh38)
18:10661250 (GRCh37)
Canonical SPDI:: NC_000018.10:10661252:G:C
Gene:: LOC101927410 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.10661253G>C, NC_000018.9:g.10661250G>C

Select item 148683596615.

rs1486835966 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 18:10664171 (GRCh38)
18:10664168 (GRCh37)
Canonical SPDI:: NC_000018.10:10664170:T:C
Gene:: LOC101927410 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.10664171T>C, NC_000018.9:g.10664168T>C, NR_110777.1:n.850T>C

Select item 148657198716.

rs1486571987 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 18:10660643 (GRCh38)
18:10660640 (GRCh37)
Canonical SPDI:: NC_000018.10:10660642:C:A,NC_000018.10:10660642:C:T
Gene:: LOC101927410 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000018.10:g.10660643C>A, NC_000018.10:g.10660643C>T, NC_000018.9:g.10660640C>A, NC_000018.9:g.10660640C>T

Select item 148624925517.

rs1486249255 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 18:10660233 (GRCh38)
18:10660230 (GRCh37)
Canonical SPDI:: NC_000018.10:10660232:T:C
Gene:: LOC101927410 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000018.10:g.10660233T>C, NC_000018.9:g.10660230T>C

Select item 148547804718.

rs1485478047 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 18:10666388 (GRCh38)
18:10666385 (GRCh37)
Canonical SPDI:: NC_000018.10:10666387:C:T
Gene:: LOC101927410 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.10666388C>T, NC_000018.9:g.10666385C>T, NR_110777.1:n.3067C>T

Select item 148488827519.

rs1484888275 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 18:10663315 (GRCh38)
18:10663312 (GRCh37)
Canonical SPDI:: NC_000018.10:10663314:A:C
Gene:: LOC101927410 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
C=0.000038/10 (TOPMED)
HGVS:: NC_000018.10:g.10663315A>C, NC_000018.9:g.10663312A>C

Select item 148475383320.

rs1484753833 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 18:10662393 (GRCh38)
18:10662390 (GRCh37)
Canonical SPDI:: NC_000018.10:10662392:A:
Gene:: LOC101927410 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000008/2 (TOPMED)
-=0.000035/1 (TOMMO)
HGVS:: NC_000018.10:g.10662393del, NC_000018.9:g.10662390del

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