SNP Links for Gene (Select 101927565) - SNP

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Select item 14903179241.

rs1490317924 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:14352711 (GRCh38)
3:14394211 (GRCh37)
Canonical SPDI:: NC_000003.12:14352710:G:A
Gene:: LINC01267 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.14352711G>A, NC_000003.11:g.14394211G>A

Select item 14899002622.

rs1489900262 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:14351806 (GRCh38)
3:14393306 (GRCh37)
Canonical SPDI:: NC_000003.12:14351805:C:T
Gene:: LINC01267 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.14351806C>T, NC_000003.11:g.14393306C>T, NR_110135.1:n.763G>A

Select item 14895526323.

rs1489552632 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 3:14349098 (GRCh38)
3:14390598 (GRCh37)
Canonical SPDI:: NC_000003.12:14349097:A:T
Gene:: LINC01267 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.14349098A>T, NC_000003.11:g.14390598A>T

Select item 14892061334.

rs1489206133 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 3:14353555 (GRCh38)
3:14395055 (GRCh37)
Canonical SPDI:: NC_000003.12:14353554:C:A,NC_000003.12:14353554:C:G,NC_000003.12:14353554:C:T
Gene:: LINC01267 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000066/1 (ALFA)
T=0.000004/1 (TOPMED)
G=0.000223/1 (Estonian)
A=0.000342/1 (KOREAN)
HGVS:: NC_000003.12:g.14353555C>A, NC_000003.12:g.14353555C>G, NC_000003.12:g.14353555C>T, NC_000003.11:g.14395055C>A, NC_000003.11:g.14395055C>G, NC_000003.11:g.14395055C>T

Select item 14887084195.

rs1488708419 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 3:14353846 (GRCh38)
3:14395346 (GRCh37)
Canonical SPDI:: NC_000003.12:14353845:T:A,NC_000003.12:14353845:T:C
Gene:: LINC01267 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00004/1 (TOMMO)
HGVS:: NC_000003.12:g.14353846T>A, NC_000003.12:g.14353846T>C, NC_000003.11:g.14395346T>A, NC_000003.11:g.14395346T>C

Select item 14882874026.

rs1488287402 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:14354076 (GRCh38)
3:14395576 (GRCh37)
Canonical SPDI:: NC_000003.12:14354075:C:T
Gene:: LINC01267 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.14354076C>T, NC_000003.11:g.14395576C>T

Select item 14870802237.

rs1487080223 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 3:14353077 (GRCh38)
3:14394577 (GRCh37)
Canonical SPDI:: NC_000003.12:14353076:T:A
Gene:: LINC01267 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000003.12:g.14353077T>A, NC_000003.11:g.14394577T>A

Select item 14858182448.

rs1485818244 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 3:14350432 (GRCh38)
3:14391932 (GRCh37)
Canonical SPDI:: NC_000003.12:14350431:C:A
Gene:: LINC01267 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.14350432C>A, NC_000003.11:g.14391932C>A

Select item 14856368469.

rs1485636846 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:14351567 (GRCh38)
3:14393067 (GRCh37)
Canonical SPDI:: NC_000003.12:14351566:T:G
Gene:: LINC01267 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.14351567T>G, NC_000003.11:g.14393067T>G, NR_110135.1:n.1002A>C

Select item 148497150710.

rs1484971507 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:14348114 (GRCh38)
3:14389614 (GRCh37)
Canonical SPDI:: NC_000003.12:14348113:A:G
Gene:: LINC01267 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000003.12:g.14348114A>G, NC_000003.11:g.14389614A>G

Select item 148483935711.

rs1484839357 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:14350935 (GRCh38)
3:14392435 (GRCh37)
Canonical SPDI:: NC_000003.12:14350934:C:T
Gene:: LINC01267 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.14350935C>T, NC_000003.11:g.14392435C>T, NR_110135.1:n.1634G>A

Select item 148478300112.

rs1484783001 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 3:14351888 (GRCh38)
3:14393388 (GRCh37)
Canonical SPDI:: NC_000003.12:14351887:G:A,NC_000003.12:14351887:G:C
Gene:: LINC01267 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000003.12:g.14351888G>A, NC_000003.12:g.14351888G>C, NC_000003.11:g.14393388G>A, NC_000003.11:g.14393388G>C, NR_110135.1:n.681C>T, NR_110135.1:n.681C>G

Select item 148476614713.

rs1484766147 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 3:14351237 (GRCh38)
3:14392737 (GRCh37)
Canonical SPDI:: NC_000003.12:14351236:G:A,NC_000003.12:14351236:G:T
Gene:: LINC01267 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.14351237G>A, NC_000003.12:g.14351237G>T, NC_000003.11:g.14392737G>A, NC_000003.11:g.14392737G>T, NR_110135.1:n.1332C>T, NR_110135.1:n.1332C>A

Select item 148450402714.

rs1484504027 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 3:14353148 (GRCh38)
3:14394648 (GRCh37)
Canonical SPDI:: NC_000003.12:14353147:C:G
Gene:: LINC01267 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000003.12:g.14353148C>G, NC_000003.11:g.14394648C>G

Select item 148395300615.

rs1483953006 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 3:14348440 (GRCh38)
3:14389940 (GRCh37)
Canonical SPDI:: NC_000003.12:14348439:AAAA:AAA
Gene:: LINC01267 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: AAA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.14348443del, NC_000003.11:g.14389943del

Select item 148385239416.

rs1483852394 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTCCAGCCAT [Show Flanks]
Chromosome:: 3:14349481 (GRCh38)
3:14390982 (GRCh37)
Canonical SPDI:: NC_000003.12:14349481:CCAGCCAT:CCAGCCATCTCCAGCCAT
Gene:: LINC01267 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCAGCCATCTCCAGCCAT=0./0 (ALFA)
CCAGCCATCT=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.14349489_14349490insCTCCAGCCAT, NC_000003.11:g.14390989_14390990insCTCCAGCCAT

Select item 148367451717.

rs1483674517 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:14353266 (GRCh38)
3:14394766 (GRCh37)
Canonical SPDI:: NC_000003.12:14353265:G:A
Gene:: LINC01267 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000003.12:g.14353266G>A, NC_000003.11:g.14394766G>A

Select item 148352383618.

rs1483523836 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 3:14349037 (GRCh38)
3:14390537 (GRCh37)
Canonical SPDI:: NC_000003.12:14349036:C:A,NC_000003.12:14349036:C:T
Gene:: LINC01267 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0./0 (GnomAD)
HGVS:: NC_000003.12:g.14349037C>A, NC_000003.12:g.14349037C>T, NC_000003.11:g.14390537C>A, NC_000003.11:g.14390537C>T

Select item 148279712419.

rs1482797124 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 3:14350338 (GRCh38)
3:14391838 (GRCh37)
Canonical SPDI:: NC_000003.12:14350337:T:C,NC_000003.12:14350337:T:G
Gene:: LINC01267 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
C=0.00006/1 (TOMMO)
G=0.000546/1 (Korea1K)
HGVS:: NC_000003.12:g.14350338T>C, NC_000003.12:g.14350338T>G, NC_000003.11:g.14391838T>C, NC_000003.11:g.14391838T>G

Select item 148231804420.

rs1482318044 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 3:14352845 (GRCh38)
3:14394345 (GRCh37)
Canonical SPDI:: NC_000003.12:14352844:A:C,NC_000003.12:14352844:A:G
Gene:: LINC01267 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (GnomAD)
G=0.000008/2 (TOPMED)
C=0.015284/28 (Korea1K)
HGVS:: NC_000003.12:g.14352845A>C, NC_000003.12:g.14352845A>G, NC_000003.11:g.14394345A>C, NC_000003.11:g.14394345A>G

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