SNP Links for Gene (Select 101927574) - SNP

Links from Gene

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Select item 14906373021.

rs1490637302 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTTAA>- [Show Flanks]
Chromosome:: X:46328958 (GRCh38)
X:46188393 (GRCh37)
Canonical SPDI:: NC_000023.11:46328954:TAAGTTAA:TAA
Gene:: LINC01186 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TAA=0./0 (ALFA)
-=0.000008/2 (TOPMED)
-=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.46328958_46328962del, NC_000023.10:g.46188393_46188397del

Select item 14905640352.

rs1490564035 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:46326315 (GRCh38)
X:46185750 (GRCh37)
Canonical SPDI:: NC_000023.11:46326314:G:A
Gene:: LINC01186 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.46326315G>A, NC_000023.10:g.46185750G>A, NR_110388.1:n.264C>T

Select item 14905281513.

rs1490528151 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:46327756 (GRCh38)
X:46187191 (GRCh37)
Canonical SPDI:: NC_000023.11:46327755:T:C
Gene:: LINC01186 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.46327756T>C, NC_000023.10:g.46187191T>C

Select item 14900717134.

rs1490071713 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: X:46325545 (GRCh38)
X:46184980 (GRCh37)
Canonical SPDI:: NC_000023.11:46325544:G:A,NC_000023.11:46325544:G:C
Gene:: LINC01186 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000023.11:g.46325545G>A, NC_000023.11:g.46325545G>C, NC_000023.10:g.46184980G>A, NC_000023.10:g.46184980G>C

Select item 14897201495.

rs1489720149 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:46327596 (GRCh38)
X:46187031 (GRCh37)
Canonical SPDI:: NC_000023.11:46327595:T:A
Gene:: LINC01186 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000023.11:g.46327596T>A, NC_000023.10:g.46187031T>A, NR_110388.1:n.79A>T

Select item 14873077706.

rs1487307770 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:46328218 (GRCh38)
X:46187653 (GRCh37)
Canonical SPDI:: NC_000023.11:46328217:G:A
Gene:: LINC01186 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.46328218G>A, NC_000023.10:g.46187653G>A

Select item 14866452807.

rs1486645280 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:46326797 (GRCh38)
X:46186232 (GRCh37)
Canonical SPDI:: NC_000023.11:46326796:G:C
Gene:: LINC01186 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.46326797G>C, NC_000023.10:g.46186232G>C

Select item 14866164678.

rs1486616467 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:46328181 (GRCh38)
X:46187616 (GRCh37)
Canonical SPDI:: NC_000023.11:46328180:C:T
Gene:: LINC01186 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.46328181C>T, NC_000023.10:g.46187616C>T

Select item 14860796579.

rs1486079657 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:46328872 (GRCh38)
X:46188307 (GRCh37)
Canonical SPDI:: NC_000023.11:46328871:G:T
Gene:: LINC01186 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.00319/52 (ALFA)
HGVS:: NC_000023.11:g.46328872G>T, NC_000023.10:g.46188307G>T

Select item 148478626210.

rs1484786262 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:46328851 (GRCh38)
X:46188286 (GRCh37)
Canonical SPDI:: NC_000023.11:46328850:T:C
Gene:: LINC01186 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.0004/2 (ALFA)
HGVS:: NC_000023.11:g.46328851T>C, NC_000023.10:g.46188286T>C

Select item 148407102811.

rs1484071028 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:46326463 (GRCh38)
X:46185898 (GRCh37)
Canonical SPDI:: NC_000023.11:46326462:G:A
Gene:: LINC01186 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000026/7 (TOPMED)
HGVS:: NC_000023.11:g.46326463G>A, NC_000023.10:g.46185898G>A

Select item 148309061912.

rs1483090619 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:46325761 (GRCh38)
X:46185196 (GRCh37)
Canonical SPDI:: NC_000023.11:46325760:T:A
Gene:: LINC01186 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00001/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000023.11:g.46325761T>A, NC_000023.10:g.46185196T>A

Select item 148278039913.

rs1482780399 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: X:46328475 (GRCh38)
X:46187910 (GRCh37)
Canonical SPDI:: NC_000023.11:46328474:G:
Gene:: LINC01186 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: -=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.46328475del, NC_000023.10:g.46187910del

Select item 148089476714.

rs1480894767 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:46326430 (GRCh38)
X:46185865 (GRCh37)
Canonical SPDI:: NC_000023.11:46326429:A:G
Gene:: LINC01186 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.46326430A>G, NC_000023.10:g.46185865A>G, NR_110388.1:n.149T>C

Select item 148086422015.

rs1480864220 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:46327865 (GRCh38)
X:46187300 (GRCh37)
Canonical SPDI:: NC_000023.11:46327864:G:A
Gene:: LINC01186 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.46327865G>A, NC_000023.10:g.46187300G>A

Select item 148082462316.

rs1480824623 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:46328477 (GRCh38)
X:46187912 (GRCh37)
Canonical SPDI:: NC_000023.11:46328476:G:A
Gene:: LINC01186 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000142/2 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.46328477G>A, NC_000023.10:g.46187912G>A

Select item 147988228417.

rs1479882284 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:46327135 (GRCh38)
X:46186570 (GRCh37)
Canonical SPDI:: NC_000023.11:46327134:A:G
Gene:: LINC01186 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.46327135A>G, NC_000023.10:g.46186570A>G

Select item 147867650818.

rs1478676508 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: X:46329092 (GRCh38)
X:46188527 (GRCh37)
Canonical SPDI:: NC_000023.11:46329091:T:A,NC_000023.11:46329091:T:C
Gene:: LINC01186 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.46329092T>A, NC_000023.11:g.46329092T>C, NC_000023.10:g.46188527T>A, NC_000023.10:g.46188527T>C

Select item 147679045819.

rs1476790458 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:46329237 (GRCh38)
X:46188672 (GRCh37)
Canonical SPDI:: NC_000023.11:46329236:A:G
Gene:: LINC01186 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000029/3 (GnomAD)
G=0.000045/12 (TOPMED)
HGVS:: NC_000023.11:g.46329237A>G, NC_000023.10:g.46188672A>G

Select item 147654447520.

rs1476544475 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:46328330 (GRCh38)
X:46187765 (GRCh37)
Canonical SPDI:: NC_000023.11:46328329:G:A
Gene:: LINC01186 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.46328330G>A, NC_000023.10:g.46187765G>A

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