SNP Links for Gene (Select 101927586) - SNP

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Select item 14913805841.

rs1491380584 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 20:50310498 (GRCh38)
20:48927035 (GRCh37)
Canonical SPDI:: NC_000020.11:50310497:AT:
Gene:: LINC01270 (Varview), LINC01271 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000014/2 (GnomAD)
HGVS:: NC_000020.11:g.50310498_50310499del, NC_000020.10:g.48927035_48927036del

Select item 14912014672.

rs1491201467 has merged into rs35112192 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 20:50319268 (GRCh38)
20:48935805 (GRCh37)
Canonical SPDI:: NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000020.11:50319258:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINC01271 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000020.11:g.50319268_50319283del, NC_000020.11:g.50319269_50319283del, NC_000020.11:g.50319270_50319283del, NC_000020.11:g.50319271_50319283del, NC_000020.11:g.50319272_50319283del, NC_000020.11:g.50319273_50319283del, NC_000020.11:g.50319274_50319283del, NC_000020.11:g.50319276_50319283del, NC_000020.11:g.50319277_50319283del, NC_000020.11:g.50319278_50319283del, NC_000020.11:g.50319279_50319283del, NC_000020.11:g.50319280_50319283del, NC_000020.11:g.50319281_50319283del, NC_000020.11:g.50319282_50319283del, NC_000020.11:g.50319283del, NC_000020.11:g.50319283dup, NC_000020.11:g.50319282_50319283dup, NC_000020.11:g.50319281_50319283dup, NC_000020.11:g.50319280_50319283dup, NC_000020.11:g.50319279_50319283dup, NC_000020.11:g.50319278_50319283dup, NC_000020.11:g.50319277_50319283dup, NC_000020.11:g.50319276_50319283dup, NC_000020.11:g.50319275_50319283dup, NC_000020.11:g.50319274_50319283dup, NC_000020.11:g.50319273_50319283dup, NC_000020.11:g.50319271_50319283dup, NC_000020.11:g.50319267_50319283dup, NC_000020.11:g.50319265_50319283dup, NC_000020.11:g.50319283_50319284insTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000020.11:g.50319283_50319284insTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000020.11:g.50319283_50319284insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000020.10:g.48935805_48935820del, NC_000020.10:g.48935806_48935820del, NC_000020.10:g.48935807_48935820del, NC_000020.10:g.48935808_48935820del, NC_000020.10:g.48935809_48935820del, NC_000020.10:g.48935810_48935820del, NC_000020.10:g.48935811_48935820del, NC_000020.10:g.48935813_48935820del, NC_000020.10:g.48935814_48935820del, NC_000020.10:g.48935815_48935820del, NC_000020.10:g.48935816_48935820del, NC_000020.10:g.48935817_48935820del, NC_000020.10:g.48935818_48935820del, NC_000020.10:g.48935819_48935820del, NC_000020.10:g.48935820del, NC_000020.10:g.48935820dup, NC_000020.10:g.48935819_48935820dup, NC_000020.10:g.48935818_48935820dup, NC_000020.10:g.48935817_48935820dup, NC_000020.10:g.48935816_48935820dup, NC_000020.10:g.48935815_48935820dup, NC_000020.10:g.48935814_48935820dup, NC_000020.10:g.48935813_48935820dup, NC_000020.10:g.48935812_48935820dup, NC_000020.10:g.48935811_48935820dup, NC_000020.10:g.48935810_48935820dup, NC_000020.10:g.48935808_48935820dup, NC_000020.10:g.48935804_48935820dup, NC_000020.10:g.48935802_48935820dup, NC_000020.10:g.48935820_48935821insTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000020.10:g.48935820_48935821insTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000020.10:g.48935820_48935821insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Select item 14911758163.

rs1491175816 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ATTT [Show Flanks]
Chromosome:: 20:50319259 (GRCh38)
20:48935797 (GRCh37)
Canonical SPDI:: NC_000020.11:50319259:TTT:TTTATTT
Gene:: LINC01271 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: TTTA=0.00002/1 (GnomAD)
HGVS:: NC_000020.11:g.50319262_50319263insATTT, NC_000020.10:g.48935799_48935800insATTT

Select item 14907789244.

rs1490778924 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCATTCATCCATCCACTCATCCACCCAC>-,CCATTCATCCATCCACTCATCCACCCACCCATTCATCCATCCACTCATCCACCCAC [Show Flanks]
Chromosome:: 20:50322962 (GRCh38)
20:48939499 (GRCh37)
Canonical SPDI:: NC_000020.11:50322956:CCCACCCATTCATCCATCCACTCATCCACCCAC:CCCAC,NC_000020.11:50322956:CCCACCCATTCATCCATCCACTCATCCACCCAC:CCCACCCATTCATCCATCCACTCATCCACCCACCCATTCATCCATCCACTCATCCACCCAC
Gene:: LINC01271 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCAC=0.00034/4 (ALFA)
-=0.00062/4 (1000Genomes)
HGVS:: NC_000020.11:g.50322962_50322989del, NC_000020.11:g.50322962_50322989dup, NC_000020.10:g.48939499_48939526del, NC_000020.10:g.48939499_48939526dup

Select item 14907275875.

rs1490727587 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:50322005 (GRCh38)
20:48938542 (GRCh37)
Canonical SPDI:: NC_000020.11:50322004:C:T
Gene:: LINC01271 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000020.11:g.50322005C>T, NC_000020.10:g.48938542C>T

Select item 14904879606.

rs1490487960 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 20:50321076 (GRCh38)
20:48937613 (GRCh37)
Canonical SPDI:: NC_000020.11:50321075:T:A,NC_000020.11:50321075:T:C
Gene:: LINC01271 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.000007/1 (GnomAD)
A=0.000685/2 (KOREAN)
HGVS:: NC_000020.11:g.50321076T>A, NC_000020.11:g.50321076T>C, NC_000020.10:g.48937613T>A, NC_000020.10:g.48937613T>C, NR_109950.1:n.267A>T, NR_109950.1:n.267A>G

Select item 14902898777.

rs1490289877 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 20:50322429 (GRCh38)
20:48938966 (GRCh37)
Canonical SPDI:: NC_000020.11:50322428:G:A,NC_000020.11:50322428:G:C,NC_000020.11:50322428:G:T
Gene:: LINC01271 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000020.11:g.50322429G>A, NC_000020.11:g.50322429G>C, NC_000020.11:g.50322429G>T, NC_000020.10:g.48938966G>A, NC_000020.10:g.48938966G>C, NC_000020.10:g.48938966G>T

Select item 14896760748.

rs1489676074 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:50317579 (GRCh38)
20:48934116 (GRCh37)
Canonical SPDI:: NC_000020.11:50317578:C:T
Gene:: LINC01271 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.50317579C>T, NC_000020.10:g.48934116C>T

Select item 14893150559.

rs1489315055 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ACTAGC [Show Flanks]
Chromosome:: 20:50316433 (GRCh38)
20:48932971 (GRCh37)
Canonical SPDI:: NC_000020.11:50316433:GCACTAGC:GCACTAGCACTAGC
Gene:: LINC01271 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GCACTAGCACTAGC=0./0 (ALFA)
GCACTA=0.000014/2 (GnomAD)
HGVS:: NC_000020.11:g.50316436_50316441dup, NC_000020.10:g.48932973_48932978dup

Select item 148928385110.

rs1489283851 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 20:50313776 (GRCh38)
20:48930313 (GRCh37)
Canonical SPDI:: NC_000020.11:50313775:T:C,NC_000020.11:50313775:T:G
Gene:: LINC01270 (Varview), LINC01271 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.50313776T>C, NC_000020.11:g.50313776T>G, NC_000020.10:g.48930313T>C, NC_000020.10:g.48930313T>G, NR_034124.1:n.1135T>C, NR_034124.1:n.1135T>G, NR_109950.1:n.849A>G, NR_109950.1:n.849A>C

Select item 148905069311.

rs1489050693 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:50312846 (GRCh38)
20:48929383 (GRCh37)
Canonical SPDI:: NC_000020.11:50312845:G:A
Gene:: LINC01270 (Varview), LINC01271 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000020.11:g.50312846G>A, NC_000020.10:g.48929383G>A

Select item 148903060312.

rs1489030603 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:50313398 (GRCh38)
20:48929935 (GRCh37)
Canonical SPDI:: NC_000020.11:50313397:A:G
Gene:: LINC01270 (Varview), LINC01271 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.50313398A>G, NC_000020.10:g.48929935A>G, NR_034124.1:n.757A>G, NR_109950.1:n.1227T>C

Select item 148799454513.

rs1487994545 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:50314922 (GRCh38)
20:48931459 (GRCh37)
Canonical SPDI:: NC_000020.11:50314921:A:G
Gene:: LINC01270 (Varview), LINC01271 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.50314922A>G, NC_000020.10:g.48931459A>G

Select item 148797026914.

rs1487970269 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:50314295 (GRCh38)
20:48930832 (GRCh37)
Canonical SPDI:: NC_000020.11:50314294:T:C
Gene:: LINC01270 (Varview), LINC01271 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.50314295T>C, NC_000020.10:g.48930832T>C, NR_034124.1:n.1654T>C, NR_109950.1:n.330A>G

Select item 148771767615.

rs1487717676 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 20:50318451 (GRCh38)
20:48934988 (GRCh37)
Canonical SPDI:: NC_000020.11:50318450:A:G,NC_000020.11:50318450:A:T
Gene:: LINC01271 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.50318451A>G, NC_000020.11:g.50318451A>T, NC_000020.10:g.48934988A>G, NC_000020.10:g.48934988A>T

Select item 148749716416.

rs1487497164 [Homo sapiens]

Variant type:: DEL
Alleles:: TTTTTTTG>- [Show Flanks]
Chromosome:: 20:50316569 (GRCh38)
20:48933106 (GRCh37)
Canonical SPDI:: NC_000020.11:50316568:TTTTTTTG:
Gene:: LINC01271 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00244/29 (ALFA)
HGVS:: NC_000020.11:g.50316569_50316576del, NC_000020.10:g.48933106_48933113del

Select item 148730820017.

rs1487308200 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:50310766 (GRCh38)
20:48927303 (GRCh37)
Canonical SPDI:: NC_000020.11:50310765:C:T
Gene:: LINC01270 (Varview), LINC01271 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000020.11:g.50310766C>T, NC_000020.10:g.48927303C>T, NR_109950.1:n.2195G>A

Select item 148699780118.

rs1486997801 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:50314851 (GRCh38)
20:48931388 (GRCh37)
Canonical SPDI:: NC_000020.11:50314850:C:T
Gene:: LINC01270 (Varview), LINC01271 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.0002/1 (ALFA)
T=0.0002/1 (Estonian)
HGVS:: NC_000020.11:g.50314851C>T, NC_000020.10:g.48931388C>T, NR_034124.1:n.2210C>T

Select item 148697094619.

rs1486970946 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:50311506 (GRCh38)
20:48928043 (GRCh37)
Canonical SPDI:: NC_000020.11:50311505:T:C
Gene:: LINC01270 (Varview), LINC01271 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.50311506T>C, NC_000020.10:g.48928043T>C

Select item 148668534420.

rs1486685344 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 20:50319378 (GRCh38)
20:48935915 (GRCh37)
Canonical SPDI:: NC_000020.11:50319377:C:A
Gene:: LINC01271 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.50319378C>A, NC_000020.10:g.48935915C>A

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