SNP Links for Gene (Select 101927642) - SNP

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Select item 14905599971.

rs1490559997 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 18:14972270 (GRCh38)
18:14972269 (GRCh37)
Canonical SPDI:: NC_000018.10:14972269:T:C
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000018.10:g.14972270T>C, NC_000018.9:g.14972269T>C

Select item 14902371632.

rs1490237163 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 18:14970135 (GRCh38)
18:14970134 (GRCh37)
Canonical SPDI:: NC_000018.10:14970134:A:C
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000142/2 (ALFA)
C=0.00006/16 (TOPMED)
C=0.000064/9 (GnomAD)
HGVS:: NC_000018.10:g.14970135A>C, NC_000018.9:g.14970134A>C, NR_110783.1:n.334T>G

Select item 14889915863.

rs1488991586 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 18:14969870 (GRCh38)
18:14969869 (GRCh37)
Canonical SPDI:: NC_000018.10:14969869:T:A
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.14969870T>A, NC_000018.9:g.14969869T>A

Select item 14870512324.

rs1487051232 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 18:14972042 (GRCh38)
18:14972041 (GRCh37)
Canonical SPDI:: NC_000018.10:14972041:T:C
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.14972042T>C, NC_000018.9:g.14972041T>C

Select item 14867479755.

rs1486747975 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 18:14972120 (GRCh38)
18:14972119 (GRCh37)
Canonical SPDI:: NC_000018.10:14972119:A:G
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000018.10:g.14972120A>G, NC_000018.9:g.14972119A>G

Select item 14858277736.

rs1485827773 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 18:14970756 (GRCh38)
18:14970755 (GRCh37)
Canonical SPDI:: NC_000018.10:14970755:C:A,NC_000018.10:14970755:C:T
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.14970756C>A, NC_000018.10:g.14970756C>T, NC_000018.9:g.14970755C>A, NC_000018.9:g.14970755C>T

Select item 14848837327.

rs1484883732 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 18:14970835 (GRCh38)
18:14970834 (GRCh37)
Canonical SPDI:: NC_000018.10:14970834:A:G
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.14970835A>G, NC_000018.9:g.14970834A>G

Select item 14819308908.

rs1481930890 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:14969449 (GRCh38)
18:14969448 (GRCh37)
Canonical SPDI:: NC_000018.10:14969448:G:A
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000018.10:g.14969449G>A, NC_000018.9:g.14969448G>A

Select item 14811402949.

rs1481140294 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 18:14970992 (GRCh38)
18:14970991 (GRCh37)
Canonical SPDI:: NC_000018.10:14970991:A:G
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000018.10:g.14970992A>G, NC_000018.9:g.14970991A>G

Select item 148080539310.

rs1480805393 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 18:14972117 (GRCh38)
18:14972116 (GRCh37)
Canonical SPDI:: NC_000018.10:14972116:G:C
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.14972117G>C, NC_000018.9:g.14972116G>C

Select item 148067966811.

rs1480679668 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 18:14971501 (GRCh38)
18:14971500 (GRCh37)
Canonical SPDI:: NC_000018.10:14971500:A:G
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.14971501A>G, NC_000018.9:g.14971500A>G

Select item 147942472412.

rs1479424724 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 18:14970505 (GRCh38)
18:14970504 (GRCh37)
Canonical SPDI:: NC_000018.10:14970504:G:T
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.14970505G>T, NC_000018.9:g.14970504G>T

Select item 147854312013.

rs1478543120 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 18:14970187 (GRCh38)
18:14970186 (GRCh37)
Canonical SPDI:: NC_000018.10:14970186:C:T
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.14970187C>T, NC_000018.9:g.14970186C>T, NR_110783.1:n.282G>A

Select item 147792185014.

rs1477921850 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 18:14969204 (GRCh38)
18:14969203 (GRCh37)
Canonical SPDI:: NC_000018.10:14969203:GG:G
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.14969205del, NC_000018.9:g.14969204del

Select item 147778250415.

rs1477782504 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 18:14971817 (GRCh38)
18:14971816 (GRCh37)
Canonical SPDI:: NC_000018.10:14971816:T:
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.14971817del, NC_000018.9:g.14971816del

Select item 147697669216.

rs1476976692 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 18:14972209 (GRCh38)
18:14972208 (GRCh37)
Canonical SPDI:: NC_000018.10:14972208:C:
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.14972209del, NC_000018.9:g.14972208del

Select item 147660045917.

rs1476600459 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 18:14969672 (GRCh38)
18:14969671 (GRCh37)
Canonical SPDI:: NC_000018.10:14969671:C:G
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.14969672C>G, NC_000018.9:g.14969671C>G, NR_110783.1:n.698G>C

Select item 147531137718.

rs1475311377 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:14972350 (GRCh38)
18:14972349 (GRCh37)
Canonical SPDI:: NC_000018.10:14972349:G:A
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000018.10:g.14972350G>A, NC_000018.9:g.14972349G>A

Select item 147465214419.

rs1474652144 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 18:14971400 (GRCh38)
18:14971399 (GRCh37)
Canonical SPDI:: NC_000018.10:14971399:C:G,NC_000018.10:14971399:C:T
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000018.10:g.14971400C>G, NC_000018.10:g.14971400C>T, NC_000018.9:g.14971399C>G, NC_000018.9:g.14971399C>T

Select item 147432629120.

rs1474326291 [Homo sapiens]

Variant type:: DEL
Alleles:: TTGGC>- [Show Flanks]
Chromosome:: 18:14971835 (GRCh38)
18:14971834 (GRCh37)
Canonical SPDI:: NC_000018.10:14971834:TTGGC:
Gene:: LINC01443 (Varview), LINC01444 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000036/5 (GnomAD)
-=0.000038/10 (TOPMED)
HGVS:: NC_000018.10:g.14971835_14971839del, NC_000018.9:g.14971834_14971838del

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