SNP Links for Gene (Select 101928226) - SNP

Links from Gene

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Select item 14914076031.

rs1491407603 has merged into rs71570470 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTT>-,T,TTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 1:248695240 (GRCh38)
1:248858541 (GRCh37)
Canonical SPDI:: NC_000001.11:248695228:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000001.11:248695228:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000001.11:248695228:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000001.11:248695228:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000001.11:248695228:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000001.11:248695228:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:248695228:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:248695228:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:248695228:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:248695228:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:248695228:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:248695228:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:248695228:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:248695228:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:248695228:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:248695228:TTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000001.11:g.248695240_248695251del, NC_000001.11:g.248695241_248695251del, NC_000001.11:g.248695245_248695251del, NC_000001.11:g.248695249_248695251del, NC_000001.11:g.248695250_248695251del, NC_000001.11:g.248695251del, NC_000001.11:g.248695251dup, NC_000001.11:g.248695250_248695251dup, NC_000001.11:g.248695249_248695251dup, NC_000001.11:g.248695248_248695251dup, NC_000001.11:g.248695247_248695251dup, NC_000001.11:g.248695246_248695251dup, NC_000001.11:g.248695245_248695251dup, NC_000001.11:g.248695244_248695251dup, NC_000001.11:g.248695238_248695251dup, NC_000001.11:g.248695251_248695252insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000001.10:g.248858541_248858552del, NC_000001.10:g.248858542_248858552del, NC_000001.10:g.248858546_248858552del, NC_000001.10:g.248858550_248858552del, NC_000001.10:g.248858551_248858552del, NC_000001.10:g.248858552del, NC_000001.10:g.248858552dup, NC_000001.10:g.248858551_248858552dup, NC_000001.10:g.248858550_248858552dup, NC_000001.10:g.248858549_248858552dup, NC_000001.10:g.248858548_248858552dup, NC_000001.10:g.248858547_248858552dup, NC_000001.10:g.248858546_248858552dup, NC_000001.10:g.248858545_248858552dup, NC_000001.10:g.248858539_248858552dup, NC_000001.10:g.248858552_248858553insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Select item 14913589732.

rs1491358973 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GTTTT [Show Flanks]
Chromosome:: 1:248695229 (GRCh38)
1:248858531 (GRCh37)
Canonical SPDI:: NC_000001.11:248695229:TTTT:TTTTGTTTT
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTGTTTT=0.00295/35 (ALFA)
TTTTG=0.01075/792 (GnomAD)
HGVS:: NC_000001.11:g.248695230_248695233T[4]GTTTT[1], NC_000001.10:g.248858531_248858534T[4]GTTTT[1]

Select item 14910184583.

rs1491018458 has merged into rs11296697 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAA>-,A,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 1:248697486 (GRCh38)
1:248860787 (GRCh37)
Canonical SPDI:: NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:248697477:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0./0 (ALFA)
-=0.10982/550 (1000Genomes)
HGVS:: NC_000001.11:g.248697486_248697499del, NC_000001.11:g.248697487_248697499del, NC_000001.11:g.248697490_248697499del, NC_000001.11:g.248697491_248697499del, NC_000001.11:g.248697492_248697499del, NC_000001.11:g.248697493_248697499del, NC_000001.11:g.248697494_248697499del, NC_000001.11:g.248697495_248697499del, NC_000001.11:g.248697496_248697499del, NC_000001.11:g.248697497_248697499del, NC_000001.11:g.248697498_248697499del, NC_000001.11:g.248697499del, NC_000001.11:g.248697499dup, NC_000001.11:g.248697498_248697499dup, NC_000001.11:g.248697497_248697499dup, NC_000001.11:g.248697496_248697499dup, NC_000001.11:g.248697495_248697499dup, NC_000001.11:g.248697494_248697499dup, NC_000001.11:g.248697493_248697499dup, NC_000001.11:g.248697489_248697499dup, NC_000001.10:g.248860787_248860800del, NC_000001.10:g.248860788_248860800del, NC_000001.10:g.248860791_248860800del, NC_000001.10:g.248860792_248860800del, NC_000001.10:g.248860793_248860800del, NC_000001.10:g.248860794_248860800del, NC_000001.10:g.248860795_248860800del, NC_000001.10:g.248860796_248860800del, NC_000001.10:g.248860797_248860800del, NC_000001.10:g.248860798_248860800del, NC_000001.10:g.248860799_248860800del, NC_000001.10:g.248860800del, NC_000001.10:g.248860800dup, NC_000001.10:g.248860799_248860800dup, NC_000001.10:g.248860798_248860800dup, NC_000001.10:g.248860797_248860800dup, NC_000001.10:g.248860796_248860800dup, NC_000001.10:g.248860795_248860800dup, NC_000001.10:g.248860794_248860800dup, NC_000001.10:g.248860790_248860800dup

Select item 14909885894.

rs1490988589 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:248695867 (GRCh38)
1:248859168 (GRCh37)
Canonical SPDI:: NC_000001.11:248695866:C:T
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000177/3 (TOMMO)
T=0.001092/2 (Korea1K)
HGVS:: NC_000001.11:g.248695867C>T, NC_000001.10:g.248859168C>T

Select item 14907323135.

rs1490732313 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 1:248695200 (GRCh38)
1:248858502 (GRCh37)
Canonical SPDI:: NC_000001.11:248695200:TTTTT:TTTTTT
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TTTTTT=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.248695205dup, NC_000001.10:g.248858506dup

Select item 14904939516.

rs1490493951 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:248695395 (GRCh38)
1:248858696 (GRCh37)
Canonical SPDI:: NC_000001.11:248695394:A:G
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000001.11:g.248695395A>G, NC_000001.10:g.248858696A>G

Select item 14904345447.

rs1490434544 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:248699067 (GRCh38)
1:248862368 (GRCh37)
Canonical SPDI:: NC_000001.11:248699066:C:T
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: non_coding_transcript_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0.012/22 (Korea1K)
HGVS:: NC_000001.11:g.248699067C>T, NC_000001.10:g.248862368C>T, XM_047420643.1:c.-356G>A, NR_125950.1:n.355C>T

Select item 14902673218.

rs1490267321 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:248697654 (GRCh38)
1:248860955 (GRCh37)
Canonical SPDI:: NC_000001.11:248697653:A:G
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: G=0.0003/1 (KOREAN)
HGVS:: NC_000001.11:g.248697654A>G, NC_000001.10:g.248860955A>G

Select item 14901688239.

rs1490168823 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:248696434 (GRCh38)
1:248859735 (GRCh37)
Canonical SPDI:: NC_000001.11:248696433:G:A
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.248696434G>A, NC_000001.10:g.248859735G>A

Select item 148975382910.

rs1489753829 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:248696879 (GRCh38)
1:248860180 (GRCh37)
Canonical SPDI:: NC_000001.11:248696878:G:A
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.248696879G>A, NC_000001.10:g.248860180G>A

Select item 148969824211.

rs1489698242 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:248697842 (GRCh38)
1:248861143 (GRCh37)
Canonical SPDI:: NC_000001.11:248697841:T:C
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.248697842T>C, NC_000001.10:g.248861143T>C

Select item 148891689512.

rs1488916895 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:248696801 (GRCh38)
1:248860102 (GRCh37)
Canonical SPDI:: NC_000001.11:248696800:T:C
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.248696801T>C, NC_000001.10:g.248860102T>C

Select item 148878070113.

rs1488780701 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:248697797 (GRCh38)
1:248861098 (GRCh37)
Canonical SPDI:: NC_000001.11:248697796:A:T
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.248697797A>T, NC_000001.10:g.248861098A>T

Select item 148873071514.

rs1488730715 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:248695308 (GRCh38)
1:248858609 (GRCh37)
Canonical SPDI:: NC_000001.11:248695307:A:C
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000016/2 (GnomAD)
HGVS:: NC_000001.11:g.248695308A>C, NC_000001.10:g.248858609A>C

Select item 148821378715.

rs1488213787 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:248698678 (GRCh38)
1:248861979 (GRCh37)
Canonical SPDI:: NC_000001.11:248698677:A:G
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000045/12 (TOPMED)
HGVS:: NC_000001.11:g.248698678A>G, NC_000001.10:g.248861979A>G

Select item 148797426916.

rs1487974269 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 1:248698208 (GRCh38)
1:248861509 (GRCh37)
Canonical SPDI:: NC_000001.11:248698207:A:G,NC_000001.11:248698207:A:T
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
G=0.000312/2 (1000Genomes)
HGVS:: NC_000001.11:g.248698208A>G, NC_000001.11:g.248698208A>T, NC_000001.10:g.248861509A>G, NC_000001.10:g.248861509A>T

Select item 148691449717.

rs1486914497 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:248696273 (GRCh38)
1:248859574 (GRCh37)
Canonical SPDI:: NC_000001.11:248696272:G:A
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000342/1 (KOREAN)
HGVS:: NC_000001.11:g.248696273G>A, NC_000001.10:g.248859574G>A

Select item 148677338518.

rs1486773385 [Homo sapiens]

Variant type:: DEL
Alleles:: ACCAGCC>- [Show Flanks]
Chromosome:: 1:248697586 (GRCh38)
1:248860887 (GRCh37)
Canonical SPDI:: NC_000001.11:248697585:ACCAGCC:
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000086/12 (GnomAD)
HGVS:: NC_000001.11:g.248697586_248697592del, NC_000001.10:g.248860887_248860893del

Select item 148599591119.

rs1485995911 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 1:248695126 (GRCh38)
1:248858427 (GRCh37)
Canonical SPDI:: NC_000001.11:248695125:T:C,NC_000001.11:248695125:T:G
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
G=0.001092/2 (Korea1K)
HGVS:: NC_000001.11:g.248695126T>C, NC_000001.11:g.248695126T>G, NC_000001.10:g.248858427T>C, NC_000001.10:g.248858427T>G

Select item 148475311320.

rs1484753113 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:248699240 (GRCh38)
1:248862541 (GRCh37)
Canonical SPDI:: NC_000001.11:248699239:T:C
Gene:: OR14I1 (Varview), LYPD9P (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.248699240T>C, NC_000001.10:g.248862541T>C, XM_047420643.1:c.-529A>G

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