SNP Links for Gene (Select 101928449) - SNP

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Select item 14914748961.

rs1491474896 [Homo sapiens]

Variant type:: DEL
Alleles:: CG>- [Show Flanks]
Chromosome:: 12:81968092 (GRCh38)
12:82361871 (GRCh37)
Canonical SPDI:: NC_000012.12:81968091:CG:
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00346/41 (ALFA)
-=0.00648/639 (GnomAD)
HGVS:: NC_000012.12:g.81968092_81968093del, NC_000012.11:g.82361871_82361872del

Select item 14914744992.

rs1491474499 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->ATTT
Chromosome:: no mapping
Canonical SPDI:

Select item 14913306323.

rs1491330632 has merged into rs763478028 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTT>-,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT [Show Flanks]
Chromosome:: 12:81971870 (GRCh38)
12:82365649 (GRCh37)
Canonical SPDI:: NC_000012.12:81971865:TTTTTTTTTTTTTT:TTTT,NC_000012.12:81971865:TTTTTTTTTTTTTT:TTTTTTTTT,NC_000012.12:81971865:TTTTTTTTTTTTTT:TTTTTTTTTT,NC_000012.12:81971865:TTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000012.12:81971865:TTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000012.12:81971865:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000012.12:81971865:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTT=0./0 (ALFA)
-=0.05263/2 (GENOME_DK)
-=0.1/60 (NorthernSweden)
HGVS:: NC_000012.12:g.81971870_81971879del, NC_000012.12:g.81971875_81971879del, NC_000012.12:g.81971876_81971879del, NC_000012.12:g.81971878_81971879del, NC_000012.12:g.81971879del, NC_000012.12:g.81971879dup, NC_000012.12:g.81971878_81971879dup, NC_000012.11:g.82365649_82365658del, NC_000012.11:g.82365654_82365658del, NC_000012.11:g.82365655_82365658del, NC_000012.11:g.82365657_82365658del, NC_000012.11:g.82365658del, NC_000012.11:g.82365658dup, NC_000012.11:g.82365657_82365658dup

Select item 14912124294.

rs1491212429 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->C
Chromosome:: no mapping
Canonical SPDI:

Select item 14911702055.

rs1491170205 [Homo sapiens]

Variant type:: INS
Alleles:: ->AT,ATGTGT,TT [Show Flanks]
Chromosome:: 12:81968092 (GRCh38)
12:82361872 (GRCh37)
Canonical SPDI:: NC_000012.12:81968092::AT,NC_000012.12:81968092::ATGTGT,NC_000012.12:81968092::TT
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATGTGT=0./0 (ALFA)
HGVS:: NC_000012.12:g.81968092_81968093insAT, NC_000012.12:g.81968092_81968093insATGTGT, NC_000012.12:g.81968092_81968093insTT, NC_000012.11:g.82361871_82361872insAT, NC_000012.11:g.82361871_82361872insATGTGT, NC_000012.11:g.82361871_82361872insTT

Select item 14910923556.

rs1491092355 has merged into rs66688885 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAA>-,AA,AAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 12:81964549 (GRCh38)
12:82358328 (GRCh37)
Canonical SPDI:: NC_000012.12:81964540:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAA,NC_000012.12:81964540:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000012.12:81964540:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000012.12:81964540:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000012.12:81964540:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000012.12:81964540:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000012.12:81964540:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:81964540:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:81964540:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:81964540:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:81964540:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:81964540:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:81964540:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000012.12:g.81964549_81964562del, NC_000012.12:g.81964551_81964562del, NC_000012.12:g.81964557_81964562del, NC_000012.12:g.81964560_81964562del, NC_000012.12:g.81964561_81964562del, NC_000012.12:g.81964562del, NC_000012.12:g.81964562dup, NC_000012.12:g.81964561_81964562dup, NC_000012.12:g.81964560_81964562dup, NC_000012.12:g.81964559_81964562dup, NC_000012.12:g.81964558_81964562dup, NC_000012.12:g.81964554_81964562dup, NC_000012.12:g.81964553_81964562dup, NC_000012.11:g.82358328_82358341del, NC_000012.11:g.82358330_82358341del, NC_000012.11:g.82358336_82358341del, NC_000012.11:g.82358339_82358341del, NC_000012.11:g.82358340_82358341del, NC_000012.11:g.82358341del, NC_000012.11:g.82358341dup, NC_000012.11:g.82358340_82358341dup, NC_000012.11:g.82358339_82358341dup, NC_000012.11:g.82358338_82358341dup, NC_000012.11:g.82358337_82358341dup, NC_000012.11:g.82358333_82358341dup, NC_000012.11:g.82358332_82358341dup

Select item 14910814077.

rs1491081407 has merged into rs544983373 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTT,TTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 12:81957153 (GRCh38)
12:82350932 (GRCh37)
Canonical SPDI:: NC_000012.12:81957140:TTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000012.12:81957140:TTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000012.12:81957140:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000012.12:81957140:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000012.12:81957140:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000012.12:81957140:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000012.12:81957140:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000012.12:81957140:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000012.12:81957140:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTT=0./0 (ALFA)
T=0.05/2 (GENOME_DK)
-=0.1246/624 (1000Genomes)
HGVS:: NC_000012.12:g.81957153_81957154del, NC_000012.12:g.81957154del, NC_000012.12:g.81957154dup, NC_000012.12:g.81957153_81957154dup, NC_000012.12:g.81957150_81957154dup, NC_000012.12:g.81957145_81957154dup, NC_000012.12:g.81957144_81957154dup, NC_000012.12:g.81957143_81957154dup, NC_000012.12:g.81957142_81957154dup, NC_000012.11:g.82350932_82350933del, NC_000012.11:g.82350933del, NC_000012.11:g.82350933dup, NC_000012.11:g.82350932_82350933dup, NC_000012.11:g.82350929_82350933dup, NC_000012.11:g.82350924_82350933dup, NC_000012.11:g.82350923_82350933dup, NC_000012.11:g.82350922_82350933dup, NC_000012.11:g.82350921_82350933dup

Select item 14910509868.

rs1491050986 has merged into rs34715851 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTT,TTTTTTT [Show Flanks]
Chromosome:: 12:81966857 (GRCh38)
12:82360636 (GRCh37)
Canonical SPDI:: NC_000012.12:81966847:TTTTTTTTTTT:TTTTTTTTT,NC_000012.12:81966847:TTTTTTTTTTT:TTTTTTTTTT,NC_000012.12:81966847:TTTTTTTTTTT:TTTTTTTTTTTT,NC_000012.12:81966847:TTTTTTTTTTT:TTTTTTTTTTTTT,NC_000012.12:81966847:TTTTTTTTTTT:TTTTTTTTTTTTTTTT
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTT=0./0 (ALFA)
T=0.3796/1694 (1000Genomes)
HGVS:: NC_000012.12:g.81966857_81966858del, NC_000012.12:g.81966858del, NC_000012.12:g.81966858dup, NC_000012.12:g.81966857_81966858dup, NC_000012.12:g.81966854_81966858dup, NC_000012.11:g.82360636_82360637del, NC_000012.11:g.82360637del, NC_000012.11:g.82360637dup, NC_000012.11:g.82360636_82360637dup, NC_000012.11:g.82360633_82360637dup

Select item 14909758159.

rs1490975815 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:81955498 (GRCh38)
12:82349277 (GRCh37)
Canonical SPDI:: NC_000012.12:81955497:C:T
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000012.12:g.81955498C>T, NC_000012.11:g.82349277C>T

Select item 149078213010.

rs1490782130 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 12:81986316 (GRCh38)
12:82380095 (GRCh37)
Canonical SPDI:: NC_000012.12:81986315:A:C
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000084/1 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.81986316A>C, NC_000012.11:g.82380095A>C

Select item 149072061711.

rs1490720617 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:81985411 (GRCh38)
12:82379190 (GRCh37)
Canonical SPDI:: NC_000012.12:81985410:C:T
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000012.12:g.81985411C>T, NC_000012.11:g.82379190C>T

Select item 149062256812.

rs1490622568 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:81985869 (GRCh38)
12:82379648 (GRCh37)
Canonical SPDI:: NC_000012.12:81985868:T:C
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.81985869T>C, NC_000012.11:g.82379648T>C

Select item 149057499713.

rs1490574997 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:81991325 (GRCh38)
12:82385104 (GRCh37)
Canonical SPDI:: NC_000012.12:81991324:T:C
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.81991325T>C, NC_000012.11:g.82385104T>C

Select item 149053067214.

rs1490530672 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 12:81985123 (GRCh38)
12:82378902 (GRCh37)
Canonical SPDI:: NC_000012.12:81985122:T:G
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.81985123T>G, NC_000012.11:g.82378902T>G

Select item 149050785715.

rs1490507857 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:81978892 (GRCh38)
12:82372671 (GRCh37)
Canonical SPDI:: NC_000012.12:81978891:C:T
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.81978892C>T, NC_000012.11:g.82372671C>T

Select item 149044865916.

rs1490448659 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:81963396 (GRCh38)
12:82357175 (GRCh37)
Canonical SPDI:: NC_000012.12:81963395:T:C
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.81963396T>C, NC_000012.11:g.82357175T>C

Select item 149037702517.

rs1490377025 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:81962435 (GRCh38)
12:82356214 (GRCh37)
Canonical SPDI:: NC_000012.12:81962434:C:T
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.81962435C>T, NC_000012.11:g.82356214C>T

Select item 149034005518.

rs1490340055 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:81978390 (GRCh38)
12:82372169 (GRCh37)
Canonical SPDI:: NC_000012.12:81978389:A:G
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.81978390A>G, NC_000012.11:g.82372169A>G

Select item 149028583819.

rs1490285838 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 12:81962990 (GRCh38)
12:82356769 (GRCh37)
Canonical SPDI:: NC_000012.12:81962989:T:A
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000071/1 (TOMMO)
HGVS:: NC_000012.12:g.81962990T>A, NC_000012.11:g.82356769T>A

Select item 149027398820.

rs1490273988 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:81977324 (GRCh38)
12:82371103 (GRCh37)
Canonical SPDI:: NC_000012.12:81977323:T:C
Gene:: LINC02426 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.81977324T>C, NC_000012.11:g.82371103T>C

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