SNP Links for Gene (Select 101928540) - SNP

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Select item 14914887531.

rs1491488753 [Homo sapiens]

Variant type:: DEL
Alleles:: GC>- [Show Flanks]
Chromosome:: 6:75441839 (GRCh38)
6:76151555 (GRCh37)
Canonical SPDI:: NC_000006.12:75441838:GC:
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0.000422/5 (ALFA)
-=0.000008/1 (GnomAD)
HGVS:: NC_000006.12:g.75441839_75441840del, NC_000006.11:g.76151555_76151556del, NG_051931.1:g.57075_57076del

Select item 14914757802.

rs1491475780 [Homo sapiens]

Variant type:: INS
Alleles:: ->CTCTCTCTCT [Show Flanks]
Chromosome:: 6:75457612 (GRCh38)
6:76167329 (GRCh37)
Canonical SPDI:: NC_000006.12:75457612::CTCTCTCTCT
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
HGVS:: NC_000006.12:g.75457612_75457613insCTCTCTCTCT, NC_000006.11:g.76167328_76167329insCTCTCTCTCT, NG_051931.1:g.41302_41303insAGAGAGAGAG

Select item 14913861073.

rs1491386107 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AG [Show Flanks]
Chromosome:: 6:75397489 (GRCh38)
6:76107206 (GRCh37)
Canonical SPDI:: NC_000006.12:75397489:G:GAG
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GAG=0./0 (ALFA)
GA=0.00003/2 (GnomAD)
HGVS:: NC_000006.12:g.75397490_75397491insAG, NC_000006.11:g.76107206_76107207insAG, NG_051931.1:g.101425_101426insTC

Select item 14912705914.

rs1491270591 [Homo sapiens]

Variant type:: DEL
Alleles:: CG>- [Show Flanks]
Chromosome:: 6:75457648 (GRCh38)
6:76167364 (GRCh37)
Canonical SPDI:: NC_000006.12:75457647:CG:
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.0043/16 (TWINSUK)
-=0.006/23 (ALSPAC)
HGVS:: NC_000006.12:g.75457648_75457649del, NC_000006.11:g.76167364_76167365del, NG_051931.1:g.41266_41267del

Select item 14911466305.

rs1491146630 has merged into rs1426246317 [Homo sapiens]

Variant type:: DELINS
Alleles:: CC>-,C,CCC [Show Flanks]
Chromosome:: 6:75441845 (GRCh38)
6:76151561 (GRCh37)
Canonical SPDI:: NC_000006.12:75441839:CCCCCCC:CCCCC,NC_000006.12:75441839:CCCCCCC:CCCCCC,NC_000006.12:75441839:CCCCCCC:CCCCCCCC
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCC=0./0 (ALFA)
C=0.000048/5 (GnomAD)
HGVS:: NC_000006.12:g.75441845_75441846del, NC_000006.12:g.75441846del, NC_000006.12:g.75441846dup, NC_000006.11:g.76151561_76151562del, NC_000006.11:g.76151562del, NC_000006.11:g.76151562dup, NG_051931.1:g.57074_57075del, NG_051931.1:g.57075del, NG_051931.1:g.57075dup

Select item 14909986736.

rs1490998673 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 6:75414505 (GRCh38)
6:76124221 (GRCh37)
Canonical SPDI:: NC_000006.12:75414504:T:A
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.75414505T>A, NC_000006.11:g.76124221T>A, NG_051931.1:g.84410A>T

Select item 14909726117.

rs1490972611 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 6:75427900 (GRCh38)
6:76137616 (GRCh37)
Canonical SPDI:: NC_000006.12:75427899:C:A,NC_000006.12:75427899:C:G,NC_000006.12:75427899:C:T
Gene:: FILIP1 (Varview), MIR4463 (Varview), LOC101928540 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000006.12:g.75427900C>A, NC_000006.12:g.75427900C>G, NC_000006.12:g.75427900C>T, NC_000006.11:g.76137616C>A, NC_000006.11:g.76137616C>G, NC_000006.11:g.76137616C>T, NG_051931.1:g.71015G>T, NG_051931.1:g.71015G>C, NG_051931.1:g.71015G>A

Select item 14908866228.

rs1490886622 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:75458030 (GRCh38)
6:76167746 (GRCh37)
Canonical SPDI:: NC_000006.12:75458029:C:T
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.75458030C>T, NC_000006.11:g.76167746C>T, NG_051931.1:g.40885G>A

Select item 14908804679.

rs1490880467 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:75401999 (GRCh38)
6:76111715 (GRCh37)
Canonical SPDI:: NC_000006.12:75401998:G:A
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.75401999G>A, NC_000006.11:g.76111715G>A, NG_051931.1:g.96916C>T

Select item 149088002010.

rs1490880020 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:75383761 (GRCh38)
6:76093477 (GRCh37)
Canonical SPDI:: NC_000006.12:75383760:A:G
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.75383761A>G, NC_000006.11:g.76093477A>G, NG_051931.1:g.115154T>C

Select item 149086063211.

rs1490860632 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 6:75459256 (GRCh38)
6:76168972 (GRCh37)
Canonical SPDI:: NC_000006.12:75459255:AAA:AA
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
-=0.000015/4 (TOPMED)
HGVS:: NC_000006.12:g.75459258del, NC_000006.11:g.76168974del, NG_051931.1:g.39659del

Select item 149085195212.

rs1490851952 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 6:75400765 (GRCh38)
6:76110481 (GRCh37)
Canonical SPDI:: NC_000006.12:75400764:A:T
Gene:: FILIP1 (Varview), LOC101928540 (Varview), LOC124901509 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.75400765A>T, NC_000006.11:g.76110481A>T, NG_051931.1:g.98150T>A

Select item 149078304713.

rs1490783047 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:75419179 (GRCh38)
6:76128895 (GRCh37)
Canonical SPDI:: NC_000006.12:75419178:C:T
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.75419179C>T, NC_000006.11:g.76128895C>T, NG_051931.1:g.79736G>A

Select item 149074458414.

rs1490744584 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:75436198 (GRCh38)
6:76145914 (GRCh37)
Canonical SPDI:: NC_000006.12:75436197:C:A
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.75436198C>A, NC_000006.11:g.76145914C>A, NG_051931.1:g.62717G>T

Select item 149073504515.

rs1490735045 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:75453106 (GRCh38)
6:76162822 (GRCh37)
Canonical SPDI:: NC_000006.12:75453105:C:T
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.75453106C>T, NC_000006.11:g.76162822C>T, NG_051931.1:g.45809G>A

Select item 149071783416.

rs1490717834 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:75435135 (GRCh38)
6:76144851 (GRCh37)
Canonical SPDI:: NC_000006.12:75435134:G:C
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000684/2 (KOREAN)
C=0.000991/17 (TOMMO)
C=0.001092/2 (Korea1K)
HGVS:: NC_000006.12:g.75435135G>C, NC_000006.11:g.76144851G>C, NG_051931.1:g.63780C>G

Select item 149067896117.

rs1490678961 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:75455579 (GRCh38)
6:76165295 (GRCh37)
Canonical SPDI:: NC_000006.12:75455578:T:C
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000142/2 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.75455579T>C, NC_000006.11:g.76165295T>C, NG_051931.1:g.43336A>G

Select item 149060705618.

rs1490607056 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:75437925 (GRCh38)
6:76147641 (GRCh37)
Canonical SPDI:: NC_000006.12:75437924:T:C
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.75437925T>C, NC_000006.11:g.76147641T>C, NG_051931.1:g.60990A>G

Select item 149052229619.

rs1490522296 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 6:75397706 (GRCh38)
6:76107422 (GRCh37)
Canonical SPDI:: NC_000006.12:75397705:T:A
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.75397706T>A, NC_000006.11:g.76107422T>A, NG_051931.1:g.101209A>T

Select item 149050688920.

rs1490506889 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:75442034 (GRCh38)
6:76151750 (GRCh37)
Canonical SPDI:: NC_000006.12:75442033:G:A
Gene:: FILIP1 (Varview), LOC101928540 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00011/2 (TOMMO)
A=0.00103/3 (KOREAN)
HGVS:: NC_000006.12:g.75442034G>A, NC_000006.11:g.76151750G>A, NG_051931.1:g.56881C>T

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