SNP Links for Gene (Select 101928725) - SNP

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Select item 14910820261.

rs1491082026 has merged into rs1555425536 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:58770030 (GRCh38)
15:59062229 (GRCh37)
Canonical SPDI:: NC_000015.10:58770028:ACA:A
Gene:: MINDY2 (Varview), MINDY2-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000169/2 (ALFA)
-=0.000107/2 (TOMMO)
-=0.000123/16 (GnomAD)
HGVS:: NC_000015.10:g.58770030_58770031del, NC_000015.9:g.59062229_59062230del

Select item 14909310302.

rs1490931030 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 15:58767597 (GRCh38)
15:59059796 (GRCh37)
Canonical SPDI:: NC_000015.10:58767596:A:T
Gene:: MINDY2-DT (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.58767597A>T, NC_000015.9:g.59059796A>T

Select item 14907160413.

rs1490716041 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:58768479 (GRCh38)
15:59060678 (GRCh37)
Canonical SPDI:: NC_000015.10:58768478:G:A
Gene:: MINDY2-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
A=0.000026/7 (TOPMED)
HGVS:: NC_000015.10:g.58768479G>A, NC_000015.9:g.59060678G>A, NR_135474.1:n.989C>T

Select item 14902166244.

rs1490216624 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 15:58772552 (GRCh38)
15:59064751 (GRCh37)
Canonical SPDI:: NC_000015.10:58772549:TTTT:TT
Gene:: MINDY2 (Varview), MINDY2-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.58772552_58772553del, NC_000015.9:g.59064751_59064752del

Select item 14896693835.

rs1489669383 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:58767631 (GRCh38)
15:59059830 (GRCh37)
Canonical SPDI:: NC_000015.10:58767630:T:A
Gene:: MINDY2-DT (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.58767631T>A, NC_000015.9:g.59059830T>A

Select item 14893865896.

rs1489386589 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:58769689 (GRCh38)
15:59061888 (GRCh37)
Canonical SPDI:: NC_000015.10:58769688:G:A,NC_000015.10:58769688:G:T
Gene:: MINDY2 (Varview), MINDY2-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000022/3 (GnomAD)
T=0.000708/20 (TOMMO)
T=0.001638/3 (Korea1K)
T=0.013347/39 (KOREAN)
HGVS:: NC_000015.10:g.58769689G>A, NC_000015.10:g.58769689G>T, NC_000015.9:g.59061888G>A, NC_000015.9:g.59061888G>T

Select item 14892631717.

rs1489263171 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:58770337 (GRCh38)
15:59062536 (GRCh37)
Canonical SPDI:: NC_000015.10:58770336:A:G
Gene:: MINDY2 (Varview), MINDY2-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.58770337A>G, NC_000015.9:g.59062536A>G

Select item 14891068418.

rs1489106841 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 15:58769538 (GRCh38)
15:59061737 (GRCh37)
Canonical SPDI:: NC_000015.10:58769537:T:A,NC_000015.10:58769537:T:C
Gene:: MINDY2 (Varview), MINDY2-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.58769538T>A, NC_000015.10:g.58769538T>C, NC_000015.9:g.59061737T>A, NC_000015.9:g.59061737T>C

Select item 14883209029.

rs1488320902 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 15:58769688 (GRCh38)
15:59061887 (GRCh37)
Canonical SPDI:: NC_000015.10:58769687:GGG:GG
Gene:: MINDY2 (Varview), MINDY2-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: GG=0.000071/1 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.58769690del, NC_000015.9:g.59061889del

Select item 148816564710.

rs1488165647 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 15:58771691 (GRCh38)
15:59063890 (GRCh37)
Canonical SPDI:: NC_000015.10:58771690:A:T
Gene:: MINDY2 (Varview), MINDY2-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,missense_variant,upstream_transcript_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.58771691A>T, NC_000015.9:g.59063890A>T, XM_011521687.3:c.296A>T, XM_011521687.2:c.296A>T, XM_011521687.1:c.296A>T, XM_011521688.3:c.296A>T, XM_011521688.2:c.296A>T, XM_011521688.1:c.296A>T, NM_001040450.3:c.296A>T, NM_001040450.2:c.296A>T, NM_001040450.1:c.296A>T, NM_001040453.3:c.296A>T, NM_001040453.2:c.296A>T, NM_001040453.1:c.296A>T, XM_011521689.3:c.296A>T, XM_011521689.2:c.296A>T, XM_011521689.1:c.296A>T, XM_011521690.3:c.296A>T, XM_011521690.2:c.296A>T, XM_011521690.1:c.296A>T, XM_017022332.3:c.296A>T, XM_017022332.2:c.296A>T, XM_017022332.1:c.296A>T, XM_017022333.3:c.296A>T, XM_017022333.2:c.296A>T, XM_017022333.1:c.296A>T, XM_017022334.3:c.296A>T, XM_017022334.2:c.296A>T, XM_017022334.1:c.296A>T, XM_017022335.3:c.296A>T, XM_017022335.2:c.296A>T, XM_017022335.1:c.296A>T, XM_024449964.2:c.296A>T, XM_024449964.1:c.296A>T, XM_047432699.1:c.296A>T, XM_047432700.1:c.296A>T, NM_019092.1:c.296A>T, XP_011519989.1:p.Glu99Val, XP_011519990.1:p.Glu99Val, NP_001035540.1:p.Glu99Val, NP_001035543.1:p.Glu99Val, XP_011519991.1:p.Glu99Val, XP_011519992.1:p.Glu99Val, XP_016877821.1:p.Glu99Val, XP_016877822.1:p.Glu99Val, XP_016877823.1:p.Glu99Val, XP_016877824.1:p.Glu99Val, XP_024305732.1:p.Glu99Val, XP_047288655.1:p.Glu99Val, XP_047288656.1:p.Glu99Val

Select item 148804118611.

rs1488041186 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:58768841 (GRCh38)
15:59061040 (GRCh37)
Canonical SPDI:: NC_000015.10:58768840:A:G
Gene:: MINDY2-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.58768841A>G, NC_000015.9:g.59061040A>G, NR_135474.1:n.627T>C

Select item 148799028212.

rs1487990282 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:58769456 (GRCh38)
15:59061655 (GRCh37)
Canonical SPDI:: NC_000015.10:58769455:G:A
Gene:: MINDY2 (Varview), MINDY2-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.58769456G>A, NC_000015.9:g.59061655G>A

Select item 148685331113.

rs1486853311 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:58769798 (GRCh38)
15:59061997 (GRCh37)
Canonical SPDI:: NC_000015.10:58769797:G:A,NC_000015.10:58769797:G:T
Gene:: MINDY2 (Varview), MINDY2-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.58769798G>A, NC_000015.10:g.58769798G>T, NC_000015.9:g.59061997G>A, NC_000015.9:g.59061997G>T

Select item 148675673514.

rs1486756735 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 15:58767932 (GRCh38)
15:59060131 (GRCh37)
Canonical SPDI:: NC_000015.10:58767931:A:T
Gene:: MINDY2-DT (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000015.10:g.58767932A>T, NC_000015.9:g.59060131A>T

Select item 148672267615.

rs1486722676 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:58771175 (GRCh38)
15:59063374 (GRCh37)
Canonical SPDI:: NC_000015.10:58771174:C:T
Gene:: MINDY2 (Varview), MINDY2-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.58771175C>T, NC_000015.9:g.59063374C>T

Select item 148644138016.

rs1486441380 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:58769696 (GRCh38)
15:59061895 (GRCh37)
Canonical SPDI:: NC_000015.10:58769695:G:A
Gene:: MINDY2 (Varview), MINDY2-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.58769696G>A, NC_000015.9:g.59061895G>A

Select item 148599864517.

rs1485998645 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:58768381 (GRCh38)
15:59060580 (GRCh37)
Canonical SPDI:: NC_000015.10:58768380:C:G
Gene:: MINDY2-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.58768381C>G, NC_000015.9:g.59060580C>G, NR_135474.1:n.1087G>C

Select item 148599344418.

rs1485993444 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:58771035 (GRCh38)
15:59063234 (GRCh37)
Canonical SPDI:: NC_000015.10:58771034:T:C
Gene:: MINDY2 (Varview), MINDY2-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.58771035T>C, NC_000015.9:g.59063234T>C

Select item 148594119519.

rs1485941195 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:58770249 (GRCh38)
15:59062448 (GRCh37)
Canonical SPDI:: NC_000015.10:58770248:T:C
Gene:: MINDY2 (Varview), MINDY2-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.58770249T>C, NC_000015.9:g.59062448T>C

Select item 148531195020.

rs1485311950 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:58770219 (GRCh38)
15:59062418 (GRCh37)
Canonical SPDI:: NC_000015.10:58770218:C:G,NC_000015.10:58770218:C:T
Gene:: MINDY2 (Varview), MINDY2-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.58770219C>G, NC_000015.10:g.58770219C>T, NC_000015.9:g.59062418C>G, NC_000015.9:g.59062418C>T