SNP Links for Gene (Select 101928834) - SNP

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Items: 1 to 20 of 5299

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Select item 14915787871.

rs1491578787 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 10:19719219 (GRCh38)
10:20008148 (GRCh37)
Canonical SPDI:: NC_000010.11:19719217:ACA:A
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.0002/11 (GnomAD)
HGVS:: NC_000010.11:g.19719219_19719220del, NC_000010.10:g.20008148_20008149del

Select item 14915301112.

rs1491530111 has merged into rs35599289 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG,GGG [Show Flanks]
Chromosome:: 10:19713045 (GRCh38)
10:20001974 (GRCh37)
Canonical SPDI:: NC_000010.11:19713044:GGGGGGGG:GGGGGGG,NC_000010.11:19713044:GGGGGGGG:GGGGGGGGG,NC_000010.11:19713044:GGGGGGGG:GGGGGGGGGG
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGGG=0.000108/1 (ALFA)
G=0.420429/1881 (Estonian)
G=0.442857/93 (Vietnamese)
G=0.449481/2251 (1000Genomes)
G=0.455242/120498 (TOPMED)
G=0.464883/278 (NorthernSweden)
G=0.475/19 (GENOME_DK)
G=0.475528/855 (Korea1K)
G=0.476648/1837 (ALSPAC)
G=0.480313/1781 (TWINSUK)
HGVS:: NC_000010.11:g.19713052del, NC_000010.11:g.19713052dup, NC_000010.11:g.19713051_19713052dup, NC_000010.10:g.20001981del, NC_000010.10:g.20001981dup, NC_000010.10:g.20001980_20001981dup

Select item 14914646793.

rs1491464679 [Homo sapiens]

Variant type:: INS
Alleles:: ->T,TG [Show Flanks]
Chromosome:: 10:19719222 (GRCh38)
10:20008152 (GRCh37)
Canonical SPDI:: NC_000010.11:19719222::T,NC_000010.11:19719222::TG
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
HGVS:: NC_000010.11:g.19719222_19719223insT, NC_000010.11:g.19719222_19719223insTG, NC_000010.10:g.20008151_20008152insT, NC_000010.10:g.20008151_20008152insTG

Select item 14914232534.

rs1491423253 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 10:19719223 (GRCh38)
10:20008152 (GRCh37)
Canonical SPDI:: NC_000010.11:19719221:ACA:A
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00008/1 (ALFA)
-=0.00008/5 (GnomAD)
-=0.00046/13 (TOMMO)
HGVS:: NC_000010.11:g.19719223_19719224del, NC_000010.10:g.20008152_20008153del

Select item 14914065245.

rs1491406524 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GTGT,GTGTGT,GTTT [Show Flanks]
Chromosome:: 10:19719216 (GRCh38)
10:20008146 (GRCh37)
Canonical SPDI:: NC_000010.11:19719216:T:TGTGT,NC_000010.11:19719216:T:TGTGTGT,NC_000010.11:19719216:T:TGTTT
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: TGTGTG=0.00002/1 (GnomAD)
TGTG=0.00119/2 (Korea1K)
HGVS:: NC_000010.11:g.19719217_19719218insGTGT, NC_000010.11:g.19719218GT[3], NC_000010.11:g.19719217_19719218insGTTT, NC_000010.10:g.20008146_20008147insGTGT, NC_000010.10:g.20008147GT[3], NC_000010.10:g.20008146_20008147insGTTT

Select item 14912727036.

rs1491272703 has merged into rs1366048990 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>-,TATA,TATATA,TATATATA,TATATATATA,TATATATATATA,TATATATATATATATATATATATATATATATATATATATA,TATATATATATATGTGTATATA,TATATATATATATGTGTATATATA [Show Flanks]
Chromosome:: 10:19719217 (GRCh38)
10:20008146 (GRCh37)
Canonical SPDI:: NC_000010.11:19719215:ATA:A,NC_000010.11:19719215:ATA:ATATA,NC_000010.11:19719215:ATA:ATATATA,NC_000010.11:19719215:ATA:ATATATATA,NC_000010.11:19719215:ATA:ATATATATATA,NC_000010.11:19719215:ATA:ATATATATATATA,NC_000010.11:19719215:ATA:ATATATATATATATATATATATATATATATATATATATATA,NC_000010.11:19719215:ATA:ATATATATATATATGTGTATATA,NC_000010.11:19719215:ATA:ATATATATATATATGTGTATATATA
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATATATA=0./0 (ALFA)
HGVS:: NC_000010.11:g.19719217_19719218del, NC_000010.11:g.19719217_19719218dup, NC_000010.11:g.19719217TA[3], NC_000010.11:g.19719217TA[4], NC_000010.11:g.19719217TA[5], NC_000010.11:g.19719217TA[6], NC_000010.11:g.19719217TA[20], NC_000010.11:g.19719216_19719218AT[7]GT[2]AT[2]A[1], NC_000010.11:g.19719216_19719218AT[7]GT[2]AT[3]A[1], NC_000010.10:g.20008146_20008147del, NC_000010.10:g.20008146_20008147dup, NC_000010.10:g.20008146TA[3], NC_000010.10:g.20008146TA[4], NC_000010.10:g.20008146TA[5], NC_000010.10:g.20008146TA[6], NC_000010.10:g.20008146TA[20], NC_000010.10:g.20008145_20008147AT[7]GT[2]AT[2]A[1], NC_000010.10:g.20008145_20008147AT[7]GT[2]AT[3]A[1]

Select item 14912219237.

rs1491221923 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ATAGGATCCTTTCGTGTGTGTGTGT [Show Flanks]
Chromosome:: 10:19729572 (GRCh38)
10:20018502 (GRCh37)
Canonical SPDI:: NC_000010.11:19729572:TGTGTGTATAGGATCCTTTCGTGTGTGTGTGT:TGTGTGTATAGGATCCTTTCGTGTGTGTGTGTATAGGATCCTTTCGTGTGTGTGTGT
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TGTGTGTATAGGATCCTTTCGTGTGTGTGTGTATAGGATCCTTTCGTGTGTGTGTGT=0./0 (ALFA)
TGTGTGTATAGGATCCTTTCGTGTG=0.00008/11 (GnomAD)
HGVS:: NC_000010.11:g.19729580_19729604dup, NC_000010.10:g.20018509_20018533dup

Select item 14911960418.

rs1491196041 [Homo sapiens]

Variant type:: DEL
Alleles:: CG>- [Show Flanks]
Chromosome:: 10:19729592 (GRCh38)
10:20018521 (GRCh37)
Canonical SPDI:: NC_000010.11:19729591:CG:
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.19729592_19729593del, NC_000010.10:g.20018521_20018522del

Select item 14911358729.

rs1491135872 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: 10:19713044 (GRCh38)
10:20001973 (GRCh37)
Canonical SPDI:: NC_000010.11:19713043:AG:
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000019/5 (TOPMED)
-=0.000023/2 (GnomAD)
HGVS:: NC_000010.11:g.19713044_19713045del, NC_000010.10:g.20001973_20001974del

Select item 149112685410.

rs1491126854 [Homo sapiens]

Variant type:: INS
Alleles:: ->TATGTGTGTG,TG,TGTGTG [Show Flanks]
Chromosome:: 10:19719218 (GRCh38)
10:20008148 (GRCh37)
Canonical SPDI:: NC_000010.11:19719218::TATGTGTGTG,NC_000010.11:19719218::TG,NC_000010.11:19719218::TGTGTG
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: TG=0.00002/1 (GnomAD)
HGVS:: NC_000010.11:g.19719218_19719219insTATGTGTGTG, NC_000010.11:g.19719218_19719219insTG, NC_000010.11:g.19719218_19719219insTGTGTG, NC_000010.10:g.20008147_20008148insTATGTGTGTG, NC_000010.10:g.20008147_20008148insTG, NC_000010.10:g.20008147_20008148insTGTGTG

Select item 149107682411.

rs1491076824 has merged into rs34633700 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGAAGAAGAAGA>-,AGA,AGAAGA,AGAAGAAGA,AGAAGAAGAAGAAGA,AGAAGAAGAAGAAGAAGA [Show Flanks]
Chromosome:: 10:19718116 (GRCh38)
10:20007045 (GRCh37)
Canonical SPDI:: NC_000010.11:19718107:GAAGAAGAAGAAGAAGAAGA:GAAGAAGA,NC_000010.11:19718107:GAAGAAGAAGAAGAAGAAGA:GAAGAAGAAGA,NC_000010.11:19718107:GAAGAAGAAGAAGAAGAAGA:GAAGAAGAAGAAGA,NC_000010.11:19718107:GAAGAAGAAGAAGAAGAAGA:GAAGAAGAAGAAGAAGA,NC_000010.11:19718107:GAAGAAGAAGAAGAAGAAGA:GAAGAAGAAGAAGAAGAAGAAGA,NC_000010.11:19718107:GAAGAAGAAGAAGAAGAAGA:GAAGAAGAAGAAGAAGAAGAAGAAGA
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GAAGAAGAAGAAGAAGAAGAAGA=0./0 (ALFA)
-=0.0013/5 (ALSPAC)
GAA=0.4563/2285 (1000Genomes)
GAA=0.475/19 (GENOME_DK)
HGVS:: NC_000010.11:g.19718110AGA[2], NC_000010.11:g.19718110AGA[3], NC_000010.11:g.19718110AGA[4], NC_000010.11:g.19718110AGA[5], NC_000010.11:g.19718110AGA[7], NC_000010.11:g.19718110AGA[8], NC_000010.10:g.20007039AGA[2], NC_000010.10:g.20007039AGA[3], NC_000010.10:g.20007039AGA[4], NC_000010.10:g.20007039AGA[5], NC_000010.10:g.20007039AGA[7], NC_000010.10:g.20007039AGA[8]

Select item 149098272712.

rs1490982727 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:19714702 (GRCh38)
10:20003631 (GRCh37)
Canonical SPDI:: NC_000010.11:19714701:A:G
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.19714702A>G, NC_000010.10:g.20003631A>G

Select item 149094846513.

rs1490948465 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:19711998 (GRCh38)
10:20000927 (GRCh37)
Canonical SPDI:: NC_000010.11:19711997:C:T
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.0002/1 (ALFA)
T=0.0002/1 (Estonian)
HGVS:: NC_000010.11:g.19711998C>T, NC_000010.10:g.20000927C>T

Select item 149090389714.

rs1490903897 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:19727344 (GRCh38)
10:20016273 (GRCh37)
Canonical SPDI:: NC_000010.11:19727343:A:G
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.19727344A>G, NC_000010.10:g.20016273A>G

Select item 149087873015.

rs1490878730 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 10:19728201 (GRCh38)
10:20017130 (GRCh37)
Canonical SPDI:: NC_000010.11:19728200:G:
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.19728201del, NC_000010.10:g.20017130del

Select item 149053016016.

rs1490530160 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:19720130 (GRCh38)
10:20009059 (GRCh37)
Canonical SPDI:: NC_000010.11:19720129:A:G
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.19720130A>G, NC_000010.10:g.20009059A>G

Select item 149043991117.

rs1490439911 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:19715140 (GRCh38)
10:20004069 (GRCh37)
Canonical SPDI:: NC_000010.11:19715139:A:G
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000010.11:g.19715140A>G, NC_000010.10:g.20004069A>G

Select item 149041368818.

rs1490413688 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 10:19726927 (GRCh38)
10:20015856 (GRCh37)
Canonical SPDI:: NC_000010.11:19726926:T:A
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.19726927T>A, NC_000010.10:g.20015856T>A

Select item 148994999619.

rs1489949996 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:19714707 (GRCh38)
10:20003636 (GRCh37)
Canonical SPDI:: NC_000010.11:19714706:A:G
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.19714707A>G, NC_000010.10:g.20003636A>G

Select item 148992257620.

rs1489922576 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:19726511 (GRCh38)
10:20015440 (GRCh37)
Canonical SPDI:: NC_000010.11:19726510:A:G
Gene:: MALRD1 (Varview), LOC101928834 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.19726511A>G, NC_000010.10:g.20015440A>G

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