SNP Links for Gene (Select 101928858) - SNP

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Links from Gene

Items: 1 to 20 of 2192

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Select item 14913193241.

rs1491319324 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 5:67799627 (GRCh38)
5:67095455 (GRCh37)
Canonical SPDI:: NC_000005.10:67799625:TGT:T
Gene:: LINC02997 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
-=0.000017/2 (GnomAD)
HGVS:: NC_000005.10:g.67799627_67799628del, NC_000005.9:g.67095455_67095456del

Select item 14911542712.

rs1491154271 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 5:67799626 (GRCh38)
5:67095455 (GRCh37)
Canonical SPDI:: NC_000005.10:67799626:G:GG
Gene:: LINC02997 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
G=0.000254/29 (GnomAD)
HGVS:: NC_000005.10:g.67799627dup, NC_000005.9:g.67095455dup

Select item 14911208043.

rs1491120804 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GTC [Show Flanks]
Chromosome:: 5:67794159 (GRCh38)
5:67089988 (GRCh37)
Canonical SPDI:: NC_000005.10:67794159:TC:TCGTC
Gene:: LINC02997 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCGTC=0./0 (ALFA)
TCG=0./0 (GnomAD)
TCG=0.000026/7 (TOPMED)
HGVS:: NC_000005.10:g.67794161_67794162insGTC, NC_000005.9:g.67089989_67089990insGTC

Select item 14903239614.

rs1490323961 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 5:67795922 (GRCh38)
5:67091750 (GRCh37)
Canonical SPDI:: NC_000005.10:67795921:C:A,NC_000005.10:67795921:C:G
Gene:: LINC02997 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.67795922C>A, NC_000005.10:g.67795922C>G, NC_000005.9:g.67091750C>A, NC_000005.9:g.67091750C>G

Select item 14898580655.

rs1489858065 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:67794330 (GRCh38)
5:67090158 (GRCh37)
Canonical SPDI:: NC_000005.10:67794329:A:G
Gene:: LINC02997 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.67794330A>G, NC_000005.9:g.67090158A>G

Select item 14898319156.

rs1489831915 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:67795462 (GRCh38)
5:67091290 (GRCh37)
Canonical SPDI:: NC_000005.10:67795461:A:G
Gene:: LINC02997 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000005.10:g.67795462A>G, NC_000005.9:g.67091290A>G

Select item 14889930857.

rs1488993085 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:67791951 (GRCh38)
5:67087779 (GRCh37)
Canonical SPDI:: NC_000005.10:67791950:T:C
Gene:: LINC02997 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000005.10:g.67791951T>C, NC_000005.9:g.67087779T>C

Select item 14888863998.

rs1488886399 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 5:67794927 (GRCh38)
5:67090755 (GRCh37)
Canonical SPDI:: NC_000005.10:67794926:T:G
Gene:: LINC02997 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000005.10:g.67794927T>G, NC_000005.9:g.67090755T>G

Select item 14880727839.

rs1488072783 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 5:67801437 (GRCh38)
5:67097265 (GRCh37)
Canonical SPDI:: NC_000005.10:67801436:T:A
Gene:: LINC02997 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.67801437T>A, NC_000005.9:g.67097265T>A

Select item 148789263910.

rs1487892639 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:67793800 (GRCh38)
5:67089628 (GRCh37)
Canonical SPDI:: NC_000005.10:67793799:T:C
Gene:: LINC02997 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000019/5 (TOPMED)
HGVS:: NC_000005.10:g.67793800T>C, NC_000005.9:g.67089628T>C

Select item 148768720711.

rs1487687207 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:67801349 (GRCh38)
5:67097177 (GRCh37)
Canonical SPDI:: NC_000005.10:67801348:T:C
Gene:: LINC02997 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.67801349T>C, NC_000005.9:g.67097177T>C

Select item 148752117512.

rs1487521175 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 5:67794059 (GRCh38)
5:67089887 (GRCh37)
Canonical SPDI:: NC_000005.10:67794058:C:A,NC_000005.10:67794058:C:T
Gene:: LINC02997 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000486/9 (ALFA)
A=0.000008/2 (TOPMED)
T=0.001786/8 (Estonian)
HGVS:: NC_000005.10:g.67794059C>A, NC_000005.10:g.67794059C>T, NC_000005.9:g.67089887C>A, NC_000005.9:g.67089887C>T

Select item 148731279113.

rs1487312791 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:67793348 (GRCh38)
5:67089176 (GRCh37)
Canonical SPDI:: NC_000005.10:67793347:T:C
Gene:: LINC02997 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.67793348T>C, NC_000005.9:g.67089176T>C

Select item 148666841114.

rs1486668411 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:67795228 (GRCh38)
5:67091056 (GRCh37)
Canonical SPDI:: NC_000005.10:67795227:C:T
Gene:: LINC02997 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.67795228C>T, NC_000005.9:g.67091056C>T

Select item 148637214915.

rs1486372149 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:67796062 (GRCh38)
5:67091890 (GRCh37)
Canonical SPDI:: NC_000005.10:67796061:A:G
Gene:: LINC02997 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000005.10:g.67796062A>G, NC_000005.9:g.67091890A>G

Select item 148614306816.

rs1486143068 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 5:67799648 (GRCh38)
5:67095476 (GRCh37)
Canonical SPDI:: NC_000005.10:67799647:C:A,NC_000005.10:67799647:C:T
Gene:: LINC02997 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000005.10:g.67799648C>A, NC_000005.10:g.67799648C>T, NC_000005.9:g.67095476C>A, NC_000005.9:g.67095476C>T

Select item 148611183617.

rs1486111836 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CCTT [Show Flanks]
Chromosome:: 5:67800649 (GRCh38)
5:67096478 (GRCh37)
Canonical SPDI:: NC_000005.10:67800649:CCTT:CCTTCCTT
Gene:: LINC02997 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: CCTTCCTT=0./0 (ALFA)
CCTT=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.67800650_67800653dup, NC_000005.9:g.67096478_67096481dup, NR_130779.1:n.1149_1152dup

Select item 148601263018.

rs1486012630 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:67791532 (GRCh38)
5:67087360 (GRCh37)
Canonical SPDI:: NC_000005.10:67791531:A:G
Gene:: LINC02997 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.67791532A>G, NC_000005.9:g.67087360A>G

Select item 148572531819.

rs1485725318 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 5:67800511 (GRCh38)
5:67096340 (GRCh37)
Canonical SPDI:: NC_000005.10:67800511:AAAAAA:AAAAAAA
Gene:: LINC02997 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAA=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.67800517dup, NC_000005.9:g.67096345dup, NR_130779.1:n.1016dup

Select item 148538311620.

rs1485383116 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:67792347 (GRCh38)
5:67088175 (GRCh37)
Canonical SPDI:: NC_000005.10:67792346:G:A
Gene:: LINC02997 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
HGVS:: NC_000005.10:g.67792347G>A, NC_000005.9:g.67088175G>A

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