SNP Links for Gene (Select 101928982) - SNP

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Links from Gene

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Select item 14903166561.

rs1490316656 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:56538193 (GRCh38)
19:57049562 (GRCh37)
Canonical SPDI:: NC_000019.10:56538192:G:T
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0.00018/3 (TOMMO)
T=0.00068/2 (KOREAN)
T=0.00109/2 (Korea1K)
HGVS:: NC_000019.10:g.56538193G>T, NC_000019.9:g.57049562G>T

Select item 14903003222.

rs1490300322 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:56539311 (GRCh38)
19:57050680 (GRCh37)
Canonical SPDI:: NC_000019.10:56539310:G:A
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,5_prime_UTR_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.56539311G>A, NC_000019.9:g.57050680G>A, XM_011526462.4:c.-293G>A, XM_011526462.3:c.-293G>A, XM_011526462.2:c.-293G>A, XM_011526462.1:c.-293G>A

Select item 14898111333.

rs1489811133 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 19:56539014 (GRCh38)
19:57050383 (GRCh37)
Canonical SPDI:: NC_000019.10:56539013:G:A,NC_000019.10:56539013:G:T
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_upstream_transcript_variant,5_prime_UTR_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.56539014G>A, NC_000019.10:g.56539014G>T, NC_000019.9:g.57050383G>A, NC_000019.9:g.57050383G>T, NM_020828.2:c.-5G>A, NM_020828.2:c.-5G>T, NM_020828.1:c.-5G>A, NM_020828.1:c.-5G>T, NM_001308440.2:c.-5G>A, NM_001308440.2:c.-5G>T, NM_001308440.1:c.-5G>A, NM_001308440.1:c.-5G>T

Select item 14891111334.

rs1489111133 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:56540577 (GRCh38)
19:57051946 (GRCh37)
Canonical SPDI:: NC_000019.10:56540576:T:C
Gene:: ZFP28 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.56540577T>C, NC_000019.9:g.57051946T>C

Select item 14889376465.

rs1488937646 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:56538795 (GRCh38)
19:57050164 (GRCh37)
Canonical SPDI:: NC_000019.10:56538794:G:A
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00126/15 (ALFA)
A=0.00027/27 (GnomAD)
A=0.00082/12 (TOMMO)
HGVS:: NC_000019.10:g.56538795G>A, NC_000019.9:g.57050164G>A

Select item 14883960226.

rs1488396022 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:56538331 (GRCh38)
19:57049700 (GRCh37)
Canonical SPDI:: NC_000019.10:56538330:G:A
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.56538331G>A, NC_000019.9:g.57049700G>A, XR_936092.3:n.78C>T, XR_936092.2:n.78C>T, XR_936092.1:n.77C>T, XR_936091.3:n.78C>T, XR_936091.2:n.78C>T, XR_936091.1:n.77C>T

Select item 14883524687.

rs1488352468 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:56540449 (GRCh38)
19:57051818 (GRCh37)
Canonical SPDI:: NC_000019.10:56540448:A:G
Gene:: ZFP28 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.56540449A>G, NC_000019.9:g.57051818A>G

Select item 14882355768.

rs1488235576 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:56539008 (GRCh38)
19:57050377 (GRCh37)
Canonical SPDI:: NC_000019.10:56539007:C:T
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_upstream_transcript_variant,5_prime_UTR_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
T=0.00003/1 (GnomAD_exomes)
HGVS:: NC_000019.10:g.56539008C>T, NC_000019.9:g.57050377C>T, NM_020828.2:c.-11C>T, NM_020828.1:c.-11C>T, NM_001308440.2:c.-11C>T, NM_001308440.1:c.-11C>T

Select item 14878854019.

rs1487885401 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TCAGCTCTGCCTTCCAGGGACACTGCTCTT [Show Flanks]
Chromosome:: 19:56539615 (GRCh38)
19:57050985 (GRCh37)
Canonical SPDI:: NC_000019.10:56539615:CTCTTTCAGCTCTGCCTTCCAGGGACACTGCTCTT:CTCTTTCAGCTCTGCCTTCCAGGGACACTGCTCTTTCAGCTCTGCCTTCCAGGGACACTGCTCTT
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: splice_acceptor_variant,2KB_upstream_variant,coding_sequence_variant,5_prime_UTR_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: CTCTTTCAGCTCTGCCTTCCAGGGACACTG=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000019.10:g.56539621_56539650dup, NC_000019.9:g.57050990_57051019dup

Select item 148698006410.

rs1486980064 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:56537047 (GRCh38)
19:57048416 (GRCh37)
Canonical SPDI:: NC_000019.10:56537046:C:T
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: 5_prime_UTR_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00637/104 (ALFA)
T=0.02321/104 (Estonian)
T=0.03687/1042 (TOMMO)
HGVS:: NC_000019.10:g.56537047C>T, NC_000019.9:g.57048416C>T, XM_011526463.4:c.-571C>T, XM_011526463.3:c.-571C>T, XM_011526463.2:c.-571C>T

Select item 148694927111.

rs1486949271 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 19:56538379 (GRCh38)
19:57049748 (GRCh37)
Canonical SPDI:: NC_000019.10:56538378:T:A,NC_000019.10:56538378:T:C
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000019.10:g.56538379T>A, NC_000019.10:g.56538379T>C, NC_000019.9:g.57049748T>A, NC_000019.9:g.57049748T>C, XR_936092.3:n.30A>T, XR_936092.3:n.30A>G, XR_936092.2:n.30A>T, XR_936092.2:n.30A>G, XR_936092.1:n.29A>T, XR_936092.1:n.29A>G, XR_936091.3:n.30A>T, XR_936091.3:n.30A>G, XR_936091.2:n.30A>T, XR_936091.2:n.30A>G, XR_936091.1:n.29A>T, XR_936091.1:n.29A>G, XR_936093.2:n.42A>T, XR_936093.2:n.42A>G, XR_936093.1:n.42A>T, XR_936093.1:n.42A>G

Select item 148596776012.

rs1485967760 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:56537196 (GRCh38)
19:57048565 (GRCh37)
Canonical SPDI:: NC_000019.10:56537195:C:G
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: 5_prime_UTR_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000019.10:g.56537196C>G, NC_000019.9:g.57048565C>G, XM_011526463.4:c.-422C>G, XM_011526463.3:c.-422C>G, XM_011526463.2:c.-422C>G

Select item 148577368113.

rs1485773681 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 19:56539466 (GRCh38)
19:57050835 (GRCh37)
Canonical SPDI:: NC_000019.10:56539465:G:C,NC_000019.10:56539465:G:T
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,5_prime_UTR_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.56539466G>C, NC_000019.10:g.56539466G>T, NC_000019.9:g.57050835G>C, NC_000019.9:g.57050835G>T, XM_011526462.4:c.-138G>C, XM_011526462.4:c.-138G>T, XM_011526462.3:c.-138G>C, XM_011526462.3:c.-138G>T, XM_011526462.2:c.-138G>C, XM_011526462.2:c.-138G>T, XM_011526462.1:c.-138G>C, XM_011526462.1:c.-138G>T

Select item 148496590314.

rs1484965903 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:56538789 (GRCh38)
19:57050158 (GRCh37)
Canonical SPDI:: NC_000019.10:56538788:G:A
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.00008/1 (ALFA)
HGVS:: NC_000019.10:g.56538789G>A, NC_000019.9:g.57050158G>A

Select item 148392392715.

rs1483923927 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:56535772 (GRCh38)
19:57047141 (GRCh37)
Canonical SPDI:: NC_000019.10:56535771:T:C
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0./0 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.56535772T>C, NC_000019.9:g.57047141T>C

Select item 148263920416.

rs1482639204 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:56538675 (GRCh38)
19:57050044 (GRCh37)
Canonical SPDI:: NC_000019.10:56538674:G:A
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.56538675G>A, NC_000019.9:g.57050044G>A

Select item 148241355917.

rs1482413559 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:56537869 (GRCh38)
19:57049238 (GRCh37)
Canonical SPDI:: NC_000019.10:56537868:G:A
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.56537869G>A, NC_000019.9:g.57049238G>A

Select item 148211311118.

rs1482113111 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:56539167 (GRCh38)
19:57050536 (GRCh37)
Canonical SPDI:: NC_000019.10:56539166:G:T
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,missense_variant,genic_upstream_transcript_variant,coding_sequence_variant,upstream_transcript_variant,intron_variant
HGVS:: NC_000019.10:g.56539167G>T, NC_000019.9:g.57050536G>T, NM_020828.2:c.149G>T, NM_020828.1:c.149G>T, NM_001308440.2:c.149G>T, NM_001308440.1:c.149G>T, NP_065879.1:p.Arg50Met, NP_001295369.1:p.Arg50Met

Select item 148080962619.

rs1480809626 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:56538428 (GRCh38)
19:57049797 (GRCh37)
Canonical SPDI:: NC_000019.10:56538427:G:C
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.56538428G>C, NC_000019.9:g.57049797G>C

Select item 148074384520.

rs1480743845 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 19:56537991 (GRCh38)
19:57049360 (GRCh37)
Canonical SPDI:: NC_000019.10:56537990:G:A,NC_000019.10:56537990:G:T
Gene:: ZFP28 (Varview), ZFP28-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.56537991G>A, NC_000019.10:g.56537991G>T, NC_000019.9:g.57049360G>A, NC_000019.9:g.57049360G>T