SNP Links for Gene (Select 101929350) - SNP

Links from Gene

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Select item 14900993061.

rs1490099306 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:16747569 (GRCh38)
22:17228459 (GRCh37)
Canonical SPDI:: NC_000022.11:16747568:G:C
Gene:: LINC01665 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000022.11:g.16747569G>C, NC_000022.10:g.17228459G>C, NR_134584.1:n.334C>G

Select item 14889399902.

rs1488939990 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 22:16748365 (GRCh38)
22:17229255 (GRCh37)
Canonical SPDI:: NC_000022.11:16748364:C:A,NC_000022.11:16748364:C:T
Gene:: LINC01665 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000022.11:g.16748365C>A, NC_000022.11:g.16748365C>T, NC_000022.10:g.17229255C>A, NC_000022.10:g.17229255C>T, NR_134584.1:n.74G>T, NR_134584.1:n.74G>A

Select item 14871301133.

rs1487130113 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:16749016 (GRCh38)
22:17229906 (GRCh37)
Canonical SPDI:: NC_000022.11:16749015:G:A
Gene:: LINC01665 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000026/7 (TOPMED)
A=0.000064/9 (GnomAD)
HGVS:: NC_000022.11:g.16749016G>A, NC_000022.10:g.17229906G>A

Select item 14870998214.

rs1487099821 [Homo sapiens]

Variant type:: SNV:
Alleles:: A>C
Chromosome:: no mapping
Canonical SPDI:

Select item 14865289445.

rs1486528944 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:16747367 (GRCh38)
22:17228257 (GRCh37)
Canonical SPDI:: NC_000022.11:16747366:G:A
Gene:: LINC01665 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000022.11:g.16747367G>A, NC_000022.10:g.17228257G>A, NR_134584.1:n.536C>T

Select item 14860137986.

rs1486013798 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 22:16749608 (GRCh38)
22:17230498 (GRCh37)
Canonical SPDI:: NC_000022.11:16749607:T:A,NC_000022.11:16749607:T:C
Gene:: LINC01665 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.16749608T>A, NC_000022.11:g.16749608T>C, NC_000022.10:g.17230498T>A, NC_000022.10:g.17230498T>C

Select item 14855150867.

rs1485515086 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:16747729 (GRCh38)
22:17228619 (GRCh37)
Canonical SPDI:: NC_000022.11:16747728:C:T
Gene:: LINC01665 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.16747729C>T, NC_000022.10:g.17228619C>T, NR_134584.1:n.174G>A

Select item 14849900448.

rs1484990044 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:16749328 (GRCh38)
22:17230218 (GRCh37)
Canonical SPDI:: NC_000022.11:16749327:G:A
Gene:: LINC01665 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.2304/1030 (ALFA)
A=0.2478/724 (KOREAN)
HGVS:: NC_000022.11:g.16749328G>A, NC_000022.10:g.17230218G>A

Select item 14841067949.

rs1484106794 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 22:16748454 (GRCh38)
22:17229344 (GRCh37)
Canonical SPDI:: NC_000022.11:16748453:C:A
Gene:: LINC01665 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.16748454C>A, NC_000022.10:g.17229344C>A

Select item 148367408410.

rs1483674084 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 22:16748754 (GRCh38)
22:17229644 (GRCh37)
Canonical SPDI:: NC_000022.11:16748753:C:A
Gene:: LINC01665 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.16748754C>A, NC_000022.10:g.17229644C>A

Select item 148217719711.

rs1482177197 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:16749227 (GRCh38)
22:17230117 (GRCh37)
Canonical SPDI:: NC_000022.11:16749226:C:T
Gene:: LINC01665 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000026/7 (TOPMED)
HGVS:: NC_000022.11:g.16749227C>T, NC_000022.10:g.17230117C>T

Select item 148211310612.

rs1482113106 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 22:16748112 (GRCh38)
22:17229002 (GRCh37)
Canonical SPDI:: NC_000022.11:16748111:CCC:CC
Gene:: LINC01665 (Varview)
Functional Consequence:: intron_variant
Validated:: by cluster
HGVS:: NC_000022.11:g.16748114del, NC_000022.10:g.17229004del

Select item 148154803213.

rs1481548032 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 22:16750178 (GRCh38)
22:17231068 (GRCh37)
Canonical SPDI:: NC_000022.11:16750177:T:G
Gene:: LINC01665 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.16750178T>G, NC_000022.10:g.17231068T>G

Select item 148057720714.

rs1480577207 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:16746410 (GRCh38)
22:17227300 (GRCh37)
Canonical SPDI:: NC_000022.11:16746409:C:T
Gene:: LINC01665 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.16746410C>T, NC_000022.10:g.17227300C>T

Select item 147980370415.

rs1479803704 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 22:16747345 (GRCh38)
22:17228235 (GRCh37)
Canonical SPDI:: NC_000022.11:16747344:C:G
Gene:: LINC01665 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.16747345C>G, NC_000022.10:g.17228235C>G, NR_134584.1:n.558G>C

Select item 147884916616.

rs1478849166 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 22:16748714 (GRCh38)
22:17229605 (GRCh37)
Canonical SPDI:: NC_000022.11:16748714:GGG:GGGG
Gene:: LINC01665 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GGGG=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.16748717dup, NC_000022.10:g.17229607dup

Select item 147882090917.

rs1478820909 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:16748257 (GRCh38)
22:17229147 (GRCh37)
Canonical SPDI:: NC_000022.11:16748256:C:T
Gene:: LINC01665 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0./0 (Korea1K)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.16748257C>T, NC_000022.10:g.17229147C>T

Select item 147841829718.

rs1478418297 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:16749090 (GRCh38)
22:17229980 (GRCh37)
Canonical SPDI:: NC_000022.11:16749089:A:G
Gene:: LINC01665 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.16749090A>G, NC_000022.10:g.17229980A>G

Select item 147759981319.

rs1477599813 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:16746740 (GRCh38)
22:17227630 (GRCh37)
Canonical SPDI:: NC_000022.11:16746739:C:T
Gene:: LINC01665 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000035/1 (TOMMO)
T=0.000045/12 (TOPMED)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000022.11:g.16746740C>T, NC_000022.10:g.17227630C>T

Select item 147666259420.

rs1476662594 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:16746995 (GRCh38)
22:17227885 (GRCh37)
Canonical SPDI:: NC_000022.11:16746994:G:C
Gene:: LINC01665 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.16746995G>C, NC_000022.10:g.17227885G>C, NR_134584.1:n.908C>G

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