SNP Links for Gene (Select 101929701) - SNP

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Select item 14913716881.

rs1491371688 [Homo sapiens]

Variant type:: DELINS
Alleles:: AG>- [Show Flanks]
Chromosome:: 15:86083206 (GRCh38)
15:86626437 (GRCh37)
Canonical SPDI:: NC_000015.10:86083203:AGAG:AG
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAG=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.86083204AG[1], NC_000015.9:g.86626435AG[1], NG_033836.2:g.8397AG[1]

Select item 14913209702.

rs1491320970 has merged into rs397854465 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTTTT>-,TT,TTT,TTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 15:86095662 (GRCh38)
15:86638893 (GRCh37)
Canonical SPDI:: NC_000015.10:86095647:TTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000015.10:86095647:TTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000015.10:86095647:TTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000015.10:86095647:TTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000015.10:86095647:TTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000015.10:86095647:TTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:86095647:TTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:86095647:TTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:86095647:TTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:86095647:TTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:86095647:TTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:86095647:TTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:86095647:TTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000015.10:g.86095662_86095675del, NC_000015.10:g.86095664_86095675del, NC_000015.10:g.86095665_86095675del, NC_000015.10:g.86095666_86095675del, NC_000015.10:g.86095669_86095675del, NC_000015.10:g.86095670_86095675del, NC_000015.10:g.86095673_86095675del, NC_000015.10:g.86095674_86095675del, NC_000015.10:g.86095675del, NC_000015.10:g.86095675dup, NC_000015.10:g.86095674_86095675dup, NC_000015.10:g.86095673_86095675dup, NC_000015.10:g.86095672_86095675dup, NC_000015.9:g.86638893_86638906del, NC_000015.9:g.86638895_86638906del, NC_000015.9:g.86638896_86638906del, NC_000015.9:g.86638897_86638906del, NC_000015.9:g.86638900_86638906del, NC_000015.9:g.86638901_86638906del, NC_000015.9:g.86638904_86638906del, NC_000015.9:g.86638905_86638906del, NC_000015.9:g.86638906del, NC_000015.9:g.86638906dup, NC_000015.9:g.86638905_86638906dup, NC_000015.9:g.86638904_86638906dup, NC_000015.9:g.86638903_86638906dup, NG_033836.2:g.20855_20868del, NG_033836.2:g.20857_20868del, NG_033836.2:g.20858_20868del, NG_033836.2:g.20859_20868del, NG_033836.2:g.20862_20868del, NG_033836.2:g.20863_20868del, NG_033836.2:g.20866_20868del, NG_033836.2:g.20867_20868del, NG_033836.2:g.20868del, NG_033836.2:g.20868dup, NG_033836.2:g.20867_20868dup, NG_033836.2:g.20866_20868dup, NG_033836.2:g.20865_20868dup

Select item 14911510893.

rs1491151089 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 15:86095647 (GRCh38)
15:86638878 (GRCh37)
Canonical SPDI:: NC_000015.10:86095646:CT:
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.017788/211 (ALFA)
-=0.011526/174 (TOMMO)
-=0.016827/1817 (GnomAD)
HGVS:: NC_000015.10:g.86095647_86095648del, NC_000015.9:g.86638878_86638879del, NG_033836.2:g.20840_20841del

Select item 14909495094.

rs1490949509 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 15:86094432 (GRCh38)
15:86637663 (GRCh37)
Canonical SPDI:: NC_000015.10:86094431:T:A,NC_000015.10:86094431:T:C
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.001027/3 (KOREAN)
HGVS:: NC_000015.10:g.86094432T>A, NC_000015.10:g.86094432T>C, NC_000015.9:g.86637663T>A, NC_000015.9:g.86637663T>C, NG_033836.2:g.19625T>A, NG_033836.2:g.19625T>C

Select item 14907862005.

rs1490786200 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:86105106 (GRCh38)
15:86648337 (GRCh37)
Canonical SPDI:: NC_000015.10:86105105:T:C
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.86105106T>C, NC_000015.9:g.86648337T>C, NG_033836.2:g.30299T>C

Select item 14904855976.

rs1490485597 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:86112152 (GRCh38)
15:86655383 (GRCh37)
Canonical SPDI:: NC_000015.10:86112151:A:G
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.86112152A>G, NC_000015.9:g.86655383A>G, NG_033836.2:g.37345A>G

Select item 14903454307.

rs1490345430 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 15:86092370 (GRCh38)
15:86635601 (GRCh37)
Canonical SPDI:: NC_000015.10:86092369:A:
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.86092370del, NC_000015.9:g.86635601del, NG_033836.2:g.17563del

Select item 14903204858.

rs1490320485 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:86091418 (GRCh38)
15:86634649 (GRCh37)
Canonical SPDI:: NC_000015.10:86091417:C:T
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.86091418C>T, NC_000015.9:g.86634649C>T, NG_033836.2:g.16611C>T

Select item 14900975519.

rs1490097551 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:86098103 (GRCh38)
15:86641334 (GRCh37)
Canonical SPDI:: NC_000015.10:86098102:A:G
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000015.10:g.86098103A>G, NC_000015.9:g.86641334A>G, NG_033836.2:g.23296A>G

Select item 149003800710.

rs1490038007 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 15:86094386 (GRCh38)
15:86637617 (GRCh37)
Canonical SPDI:: NC_000015.10:86094385:T:G
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.86094386T>G, NC_000015.9:g.86637617T>G, NG_033836.2:g.19579T>G

Select item 148999685511.

rs1489996855 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 15:86112509 (GRCh38)
15:86655740 (GRCh37)
Canonical SPDI:: NC_000015.10:86112508:A:G,NC_000015.10:86112508:A:T
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000015.10:g.86112509A>G, NC_000015.10:g.86112509A>T, NC_000015.9:g.86655740A>G, NC_000015.9:g.86655740A>T, NG_033836.2:g.37702A>G, NG_033836.2:g.37702A>T

Select item 148996512312.

rs1489965123 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:86095935 (GRCh38)
15:86639166 (GRCh37)
Canonical SPDI:: NC_000015.10:86095934:T:C
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000034/9 (TOPMED)
HGVS:: NC_000015.10:g.86095935T>C, NC_000015.9:g.86639166T>C, NG_033836.2:g.21128T>C

Select item 148995044313.

rs1489950443 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:86113232 (GRCh38)
15:86656463 (GRCh37)
Canonical SPDI:: NC_000015.10:86113231:C:G,NC_000015.10:86113231:C:T
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
G=0.00001/1 (GnomAD)
HGVS:: NC_000015.10:g.86113232C>G, NC_000015.10:g.86113232C>T, NC_000015.9:g.86656463C>G, NC_000015.9:g.86656463C>T, NG_033836.2:g.38425C>G, NG_033836.2:g.38425C>T

Select item 148991930414.

rs1489919304 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:86108430 (GRCh38)
15:86651661 (GRCh37)
Canonical SPDI:: NC_000015.10:86108429:A:G
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.86108430A>G, NC_000015.9:g.86651661A>G, NG_033836.2:g.33623A>G

Select item 148974489315.

rs1489744893 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:86099748 (GRCh38)
15:86642979 (GRCh37)
Canonical SPDI:: NC_000015.10:86099747:G:C
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000015.10:g.86099748G>C, NC_000015.9:g.86642979G>C, NG_033836.2:g.24941G>C

Select item 148969811416.

rs1489698114 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:86107118 (GRCh38)
15:86650349 (GRCh37)
Canonical SPDI:: NC_000015.10:86107117:C:T
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.86107118C>T, NC_000015.9:g.86650349C>T, NG_033836.2:g.32311C>T

Select item 148961735417.

rs1489617354 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:86105865 (GRCh38)
15:86649096 (GRCh37)
Canonical SPDI:: NC_000015.10:86105864:T:C
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000015.10:g.86105865T>C, NC_000015.9:g.86649096T>C, NG_033836.2:g.31058T>C

Select item 148950766918.

rs1489507669 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:86103428 (GRCh38)
15:86646659 (GRCh37)
Canonical SPDI:: NC_000015.10:86103427:C:T
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000015.10:g.86103428C>T, NC_000015.9:g.86646659C>T, NG_033836.2:g.28621C>T

Select item 148947256219.

rs1489472562 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:86090064 (GRCh38)
15:86633295 (GRCh37)
Canonical SPDI:: NC_000015.10:86090063:T:C
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.86090064T>C, NC_000015.9:g.86633295T>C, NG_033836.2:g.15257T>C

Select item 148943603620.

rs1489436036 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:86103575 (GRCh38)
15:86646806 (GRCh37)
Canonical SPDI:: NC_000015.10:86103574:G:C
Gene:: AGBL1 (Varview), LINC01584 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.86103575G>C, NC_000015.9:g.86646806G>C, NG_033836.2:g.28768G>C

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