SNP Links for Gene (Select 101930747) - SNP

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Select item 14914493271.

rs1491449327 [Homo sapiens]

Variant type:: INS
Alleles:: ->C,CTC [Show Flanks]
Chromosome:: 13:91093400 (GRCh38)
13:91745655 (GRCh37)
Canonical SPDI:: NC_000013.11:91093400::C,NC_000013.11:91093400::CTC
Gene:: LINC00380 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CTC=0./0 (ALFA)
HGVS:: NC_000013.11:g.91093400_91093401insC, NC_000013.11:g.91093400_91093401insCTC, NC_000013.10:g.91745654_91745655insC, NC_000013.10:g.91745654_91745655insCTC

Select item 14912635042.

rs1491263504 has merged into rs762447882 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 13:91093411 (GRCh38)
13:91745665 (GRCh37)
Canonical SPDI:: NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:91093399:TTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINC00380 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
TTTTTTTTTTTTT=0./0 (GENOME_DK)
HGVS:: NC_000013.11:g.91093411_91093424del, NC_000013.11:g.91093412_91093424del, NC_000013.11:g.91093413_91093424del, NC_000013.11:g.91093414_91093424del, NC_000013.11:g.91093415_91093424del, NC_000013.11:g.91093416_91093424del, NC_000013.11:g.91093417_91093424del, NC_000013.11:g.91093418_91093424del, NC_000013.11:g.91093419_91093424del, NC_000013.11:g.91093420_91093424del, NC_000013.11:g.91093421_91093424del, NC_000013.11:g.91093422_91093424del, NC_000013.11:g.91093423_91093424del, NC_000013.11:g.91093424del, NC_000013.11:g.91093424dup, NC_000013.11:g.91093423_91093424dup, NC_000013.11:g.91093422_91093424dup, NC_000013.11:g.91093421_91093424dup, NC_000013.11:g.91093420_91093424dup, NC_000013.11:g.91093419_91093424dup, NC_000013.11:g.91093418_91093424dup, NC_000013.11:g.91093417_91093424dup, NC_000013.11:g.91093416_91093424dup, NC_000013.11:g.91093424_91093425insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000013.10:g.91745665_91745678del, NC_000013.10:g.91745666_91745678del, NC_000013.10:g.91745667_91745678del, NC_000013.10:g.91745668_91745678del, NC_000013.10:g.91745669_91745678del, NC_000013.10:g.91745670_91745678del, NC_000013.10:g.91745671_91745678del, NC_000013.10:g.91745672_91745678del, NC_000013.10:g.91745673_91745678del, NC_000013.10:g.91745674_91745678del, NC_000013.10:g.91745675_91745678del, NC_000013.10:g.91745676_91745678del, NC_000013.10:g.91745677_91745678del, NC_000013.10:g.91745678del, NC_000013.10:g.91745678dup, NC_000013.10:g.91745677_91745678dup, NC_000013.10:g.91745676_91745678dup, NC_000013.10:g.91745675_91745678dup, NC_000013.10:g.91745674_91745678dup, NC_000013.10:g.91745673_91745678dup, NC_000013.10:g.91745672_91745678dup, NC_000013.10:g.91745671_91745678dup, NC_000013.10:g.91745670_91745678dup, NC_000013.10:g.91745678_91745679insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Select item 14911076823.

rs1491107682 has merged into rs398037743 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 13:91091871 (GRCh38)
13:91744125 (GRCh37)
Canonical SPDI:: NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:91091857:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC00380 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAA=0./0 (ALFA)
-=0.22464/1125 (1000Genomes)
HGVS:: NC_000013.11:g.91091871_91091878del, NC_000013.11:g.91091872_91091878del, NC_000013.11:g.91091873_91091878del, NC_000013.11:g.91091874_91091878del, NC_000013.11:g.91091875_91091878del, NC_000013.11:g.91091876_91091878del, NC_000013.11:g.91091877_91091878del, NC_000013.11:g.91091878del, NC_000013.11:g.91091878dup, NC_000013.11:g.91091877_91091878dup, NC_000013.11:g.91091876_91091878dup, NC_000013.11:g.91091875_91091878dup, NC_000013.11:g.91091874_91091878dup, NC_000013.11:g.91091873_91091878dup, NC_000013.11:g.91091872_91091878dup, NC_000013.11:g.91091871_91091878dup, NC_000013.11:g.91091870_91091878dup, NC_000013.11:g.91091878_91091879insAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000013.10:g.91744125_91744132del, NC_000013.10:g.91744126_91744132del, NC_000013.10:g.91744127_91744132del, NC_000013.10:g.91744128_91744132del, NC_000013.10:g.91744129_91744132del, NC_000013.10:g.91744130_91744132del, NC_000013.10:g.91744131_91744132del, NC_000013.10:g.91744132del, NC_000013.10:g.91744132dup, NC_000013.10:g.91744131_91744132dup, NC_000013.10:g.91744130_91744132dup, NC_000013.10:g.91744129_91744132dup, NC_000013.10:g.91744128_91744132dup, NC_000013.10:g.91744127_91744132dup, NC_000013.10:g.91744126_91744132dup, NC_000013.10:g.91744125_91744132dup, NC_000013.10:g.91744124_91744132dup, NC_000013.10:g.91744132_91744133insAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 14889959004.

rs1488995900 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:91091165 (GRCh38)
13:91743419 (GRCh37)
Canonical SPDI:: NC_000013.11:91091164:A:G
Gene:: LINC00380 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.91091165A>G, NC_000013.10:g.91743419A>G

Select item 14884873745.

rs1488487374 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:91087676 (GRCh38)
13:91739930 (GRCh37)
Canonical SPDI:: NC_000013.11:91087675:G:C
Gene:: LINC00380 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.91087676G>C, NC_000013.10:g.91739930G>C

Select item 14884677816.

rs1488467781 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:91091654 (GRCh38)
13:91743908 (GRCh37)
Canonical SPDI:: NC_000013.11:91091653:A:G
Gene:: LINC00380 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.91091654A>G, NC_000013.10:g.91743908A>G

Select item 14882033177.

rs1488203317 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:91087912 (GRCh38)
13:91740166 (GRCh37)
Canonical SPDI:: NC_000013.11:91087911:C:T
Gene:: LINC00380 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.91087912C>T, NC_000013.10:g.91740166C>T

Select item 14867039678.

rs1486703967 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:91092387 (GRCh38)
13:91744641 (GRCh37)
Canonical SPDI:: NC_000013.11:91092386:A:G
Gene:: LINC00380 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/4 (GnomAD)
G=0.000053/14 (TOPMED)
HGVS:: NC_000013.11:g.91092387A>G, NC_000013.10:g.91744641A>G

Select item 14866721719.

rs1486672171 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:91088653 (GRCh38)
13:91740907 (GRCh37)
Canonical SPDI:: NC_000013.11:91088652:C:T
Gene:: LINC00380 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.91088653C>T, NC_000013.10:g.91740907C>T

Select item 148627065410.

rs1486270654 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:91091362 (GRCh38)
13:91743616 (GRCh37)
Canonical SPDI:: NC_000013.11:91091361:A:G
Gene:: LINC00380 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.002633/43 (ALFA)
G=0.000329/43 (GnomAD)
G=0.000531/9 (TOMMO)
G=0.001405/9 (1000Genomes)
G=0.016769/49 (KOREAN)
HGVS:: NC_000013.11:g.91091362A>G, NC_000013.10:g.91743616A>G

Select item 148520701611.

rs1485207016 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 13:91091079 (GRCh38)
13:91743333 (GRCh37)
Canonical SPDI:: NC_000013.11:91091078:A:C
Gene:: LINC00380 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.91091079A>C, NC_000013.10:g.91743333A>C

Select item 148496745112.

rs1484967451 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:91087035 (GRCh38)
13:91739289 (GRCh37)
Canonical SPDI:: NC_000013.11:91087034:T:C
Gene:: LINC00380 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000013.11:g.91087035T>C, NC_000013.10:g.91739289T>C

Select item 148474467513.

rs1484744675 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:91090739 (GRCh38)
13:91742993 (GRCh37)
Canonical SPDI:: NC_000013.11:91090738:G:T
Gene:: LINC00380 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
T=0.000342/1 (KOREAN)
T=0.000546/1 (Korea1K)
T=0.000743/12 (TOMMO)
HGVS:: NC_000013.11:g.91090739G>T, NC_000013.10:g.91742993G>T

Select item 148429281314.

rs1484292813 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 13:91092928 (GRCh38)
13:91745182 (GRCh37)
Canonical SPDI:: NC_000013.11:91092927:A:T
Gene:: LINC00380 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.91092928A>T, NC_000013.10:g.91745182A>T

Select item 148395314815.

rs1483953148 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 13:91086907 (GRCh38)
13:91739161 (GRCh37)
Canonical SPDI:: NC_000013.11:91086906:C:G,NC_000013.11:91086906:C:T
Gene:: LINC00380 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.91086907C>G, NC_000013.11:g.91086907C>T, NC_000013.10:g.91739161C>G, NC_000013.10:g.91739161C>T

Select item 148340176916.

rs1483401769 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:91087798 (GRCh38)
13:91740052 (GRCh37)
Canonical SPDI:: NC_000013.11:91087797:A:G
Gene:: LINC00380 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000013.11:g.91087798A>G, NC_000013.10:g.91740052A>G

Select item 148278174017.

rs1482781740 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:91087680 (GRCh38)
13:91739934 (GRCh37)
Canonical SPDI:: NC_000013.11:91087679:A:G
Gene:: LINC00380 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.91087680A>G, NC_000013.10:g.91739934A>G

Select item 148242171718.

rs1482421717 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 13:91088252 (GRCh38)
13:91740506 (GRCh37)
Canonical SPDI:: NC_000013.11:91088251:A:T
Gene:: LINC00380 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.91088252A>T, NC_000013.10:g.91740506A>T

Select item 148211063219.

rs1482110632 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 13:91093435 (GRCh38)
13:91745689 (GRCh37)
Canonical SPDI:: NC_000013.11:91093434:C:A,NC_000013.11:91093434:C:T
Gene:: LINC00380 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00086/13 (ALFA)
T=0.00007/7 (GnomAD)
A=0.00012/2 (TOMMO)
T=0.00291/13 (Estonian)
HGVS:: NC_000013.11:g.91093435C>A, NC_000013.11:g.91093435C>T, NC_000013.10:g.91745689C>A, NC_000013.10:g.91745689C>T

Select item 148198428720.

rs1481984287 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:91087785 (GRCh38)
13:91740039 (GRCh37)
Canonical SPDI:: NC_000013.11:91087784:G:A
Gene:: LINC00380 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.91087785G>A, NC_000013.10:g.91740039G>A

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