SNP Links for Gene (Select 102723320) - SNP

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Items: 1 to 20 of 16778

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Select item 14915496551.

rs1491549655 [Homo sapiens]

Variant type:: DEL
Alleles:: AC>- [Show Flanks]
Chromosome:: 15:100405258 (GRCh38)
15:100945463 (GRCh37)
Canonical SPDI:: NC_000015.10:100405257:AC:
Gene:: CERS3 (Varview), CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000037/5 (GnomAD)
HGVS:: NC_000015.10:g.100405258_100405259del, NC_000015.9:g.100945463_100945464del, NG_042826.1:g.144462_144463del

Select item 14914744642.

rs1491474464 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 15:100438036 (GRCh38)
15:100978241 (GRCh37)
Canonical SPDI:: NC_000015.10:100438035:CT:
Gene:: CERS3 (Varview), CERS3-AS1 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00003/2 (GnomAD)
HGVS:: NC_000015.10:g.100438036_100438037del, NC_000015.9:g.100978241_100978242del, NG_042826.1:g.111684_111685del

Select item 14913809383.

rs1491380938 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:100392343 (GRCh38)
15:100932548 (GRCh37)
Canonical SPDI:: NC_000015.10:100392342:CA:
Gene:: CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00008/1 (ALFA)
HGVS:: NC_000015.10:g.100392343_100392344del, NC_000015.9:g.100932548_100932549del

Select item 14912906154.

rs1491290615 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->G
Chromosome:: no mapping
Canonical SPDI:

Select item 14912552755.

rs1491255275 [Homo sapiens]

Variant type:: INS
Alleles:: ->C,G [Show Flanks]
Chromosome:: 15:100392344 (GRCh38)
15:100932550 (GRCh37)
Canonical SPDI:: NC_000015.10:100392344::C,NC_000015.10:100392344::G
Gene:: CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000015.10:g.100392344_100392345insC, NC_000015.10:g.100392344_100392345insG, NC_000015.9:g.100932549_100932550insC, NC_000015.9:g.100932549_100932550insG

Select item 14912304716.

rs1491230471 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 15:100423096 (GRCh38)
15:100963301 (GRCh37)
Canonical SPDI:: NC_000015.10:100423095:AT:
Gene:: CERS3 (Varview), CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000044/6 (GnomAD)
HGVS:: NC_000015.10:g.100423096_100423097del, NC_000015.9:g.100963301_100963302del, NG_042826.1:g.126624_126625del

Select item 14911512447.

rs1491151244 has merged into rs55792026 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAA>-,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 15:100392355 (GRCh38)
15:100932560 (GRCh37)
Canonical SPDI:: NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:100392343:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000015.10:g.100392355_100392365del, NC_000015.10:g.100392357_100392365del, NC_000015.10:g.100392358_100392365del, NC_000015.10:g.100392359_100392365del, NC_000015.10:g.100392360_100392365del, NC_000015.10:g.100392361_100392365del, NC_000015.10:g.100392362_100392365del, NC_000015.10:g.100392363_100392365del, NC_000015.10:g.100392364_100392365del, NC_000015.10:g.100392365del, NC_000015.10:g.100392365dup, NC_000015.10:g.100392364_100392365dup, NC_000015.10:g.100392363_100392365dup, NC_000015.10:g.100392362_100392365dup, NC_000015.10:g.100392361_100392365dup, NC_000015.10:g.100392360_100392365dup, NC_000015.10:g.100392359_100392365dup, NC_000015.10:g.100392358_100392365dup, NC_000015.10:g.100392357_100392365dup, NC_000015.10:g.100392344_100392365dup, NC_000015.9:g.100932560_100932570del, NC_000015.9:g.100932562_100932570del, NC_000015.9:g.100932563_100932570del, NC_000015.9:g.100932564_100932570del, NC_000015.9:g.100932565_100932570del, NC_000015.9:g.100932566_100932570del, NC_000015.9:g.100932567_100932570del, NC_000015.9:g.100932568_100932570del, NC_000015.9:g.100932569_100932570del, NC_000015.9:g.100932570del, NC_000015.9:g.100932570dup, NC_000015.9:g.100932569_100932570dup, NC_000015.9:g.100932568_100932570dup, NC_000015.9:g.100932567_100932570dup, NC_000015.9:g.100932566_100932570dup, NC_000015.9:g.100932565_100932570dup, NC_000015.9:g.100932564_100932570dup, NC_000015.9:g.100932563_100932570dup, NC_000015.9:g.100932562_100932570dup, NC_000015.9:g.100932549_100932570dup

Select item 14911337618.

rs1491133761 has merged into rs77853987 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>-,CC [Show Flanks]
Chromosome:: 15:100405259 (GRCh38)
15:100945464 (GRCh37)
Canonical SPDI:: NC_000015.10:100405258:CCCC:CCC,NC_000015.10:100405258:CCCC:CCCCC
Gene:: CERS3 (Varview), CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCC=0./0 (ALFA)
HGVS:: NC_000015.10:g.100405262del, NC_000015.10:g.100405262dup, NC_000015.9:g.100945467del, NC_000015.9:g.100945467dup, NG_042826.1:g.144462del, NG_042826.1:g.144462dup

Select item 14911317829.

rs1491131782 has merged into rs56131548 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA,AAAAA,AAAAAA,AAAAAAA [Show Flanks]
Chromosome:: 15:100413784 (GRCh38)
15:100953989 (GRCh37)
Canonical SPDI:: NC_000015.10:100413773:AAAAAAAAAAAAA:AAAAAAAAAA,NC_000015.10:100413773:AAAAAAAAAAAAA:AAAAAAAAAAA,NC_000015.10:100413773:AAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:100413773:AAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:100413773:AAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:100413773:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000015.10:100413773:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA
Gene:: CERS3 (Varview), CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
-=0.3413/1709 (1000Genomes)
HGVS:: NC_000015.10:g.100413784_100413786del, NC_000015.10:g.100413785_100413786del, NC_000015.10:g.100413786del, NC_000015.10:g.100413786dup, NC_000015.10:g.100413785_100413786dup, NC_000015.10:g.100413784_100413786dup, NC_000015.10:g.100413783_100413786dup, NC_000015.9:g.100953989_100953991del, NC_000015.9:g.100953990_100953991del, NC_000015.9:g.100953991del, NC_000015.9:g.100953991dup, NC_000015.9:g.100953990_100953991dup, NC_000015.9:g.100953989_100953991dup, NC_000015.9:g.100953988_100953991dup, NG_042826.1:g.135945_135947del, NG_042826.1:g.135946_135947del, NG_042826.1:g.135947del, NG_042826.1:g.135947dup, NG_042826.1:g.135946_135947dup, NG_042826.1:g.135945_135947dup, NG_042826.1:g.135944_135947dup

Select item 149106615910.

rs1491066159 has merged into rs58505884 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTT [Show Flanks]
Chromosome:: 15:100376305 (GRCh38)
15:100916510 (GRCh37)
Canonical SPDI:: NC_000015.10:100376295:TTTTTTTTTTT:TTTTTTTTT,NC_000015.10:100376295:TTTTTTTTTTT:TTTTTTTTTT,NC_000015.10:100376295:TTTTTTTTTTT:TTTTTTTTTTTT,NC_000015.10:100376295:TTTTTTTTTTT:TTTTTTTTTTTTT
Gene:: CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTT=0./0 (ALFA)
T=0.0283/6 (Vietnamese)
T=0.04/154 (ALSPAC)
T=0.0488/181 (TWINSUK)
T=0.0567/34 (NorthernSweden)
T=0.1/4 (GENOME_DK)
T=0.1145/564 (1000Genomes)
HGVS:: NC_000015.10:g.100376305_100376306del, NC_000015.10:g.100376306del, NC_000015.10:g.100376306dup, NC_000015.10:g.100376305_100376306dup, NC_000015.9:g.100916510_100916511del, NC_000015.9:g.100916511del, NC_000015.9:g.100916511dup, NC_000015.9:g.100916510_100916511dup

Select item 149106503011.

rs1491065030 has merged into rs34810954 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTGTGTGT>-,GTGTGT,GTGTGTGTGT,GTGTGTGTGTGT [Show Flanks]
Chromosome:: 15:100386852 (GRCh38)
15:100927057 (GRCh37)
Canonical SPDI:: NC_000015.10:100386846:TGTGTGTGTGTGT:TGTGT,NC_000015.10:100386846:TGTGTGTGTGTGT:TGTGTGTGTGT,NC_000015.10:100386846:TGTGTGTGTGTGT:TGTGTGTGTGTGTGT,NC_000015.10:100386846:TGTGTGTGTGTGT:TGTGTGTGTGTGTGTGT
Gene:: CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGTGTGTGT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
TG=0.277356/1242 (Estonian)
TG=0.288333/173 (NorthernSweden)
HGVS:: NC_000015.10:g.100386848GT[2], NC_000015.10:g.100386848GT[5], NC_000015.10:g.100386848GT[7], NC_000015.10:g.100386848GT[8], NC_000015.9:g.100927053GT[2], NC_000015.9:g.100927053GT[5], NC_000015.9:g.100927053GT[7], NC_000015.9:g.100927053GT[8]

Select item 149102268212.

rs1491022682 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:100405249 (GRCh38)
15:100945454 (GRCh37)
Canonical SPDI:: NC_000015.10:100405247:ACA:A
Gene:: CERS3 (Varview), CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.0032/38 (ALFA)
-=0.0079/282 (GnomAD)
HGVS:: NC_000015.10:g.100405249_100405250del, NC_000015.9:g.100945454_100945455del, NG_042826.1:g.144472_144473del

Select item 149093158613.

rs1490931586 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:100383621 (GRCh38)
15:100923826 (GRCh37)
Canonical SPDI:: NC_000015.10:100383620:G:C
Gene:: CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.100383621G>C, NC_000015.9:g.100923826G>C

Select item 149092652814.

rs1490926528 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:100405089 (GRCh38)
15:100945294 (GRCh37)
Canonical SPDI:: NC_000015.10:100405088:C:T
Gene:: CERS3 (Varview), CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000015.10:g.100405089C>T, NC_000015.9:g.100945294C>T, NG_042826.1:g.144632G>A

Select item 149087889615.

rs1490878896 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:100397226 (GRCh38)
15:100937431 (GRCh37)
Canonical SPDI:: NC_000015.10:100397225:C:T
Gene:: CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000156/1 (1000Genomes)
T=0.000318/5 (TOMMO)
T=0.000546/1 (Korea1K)
HGVS:: NC_000015.10:g.100397226C>T, NC_000015.9:g.100937431C>T

Select item 149082692116.

rs1490826921 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:100434033 (GRCh38)
15:100974238 (GRCh37)
Canonical SPDI:: NC_000015.10:100434032:C:G
Gene:: CERS3 (Varview), CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000084/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.100434033C>G, NC_000015.9:g.100974238C>G, NG_042826.1:g.115688G>C

Select item 149075825517.

rs1490758255 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 15:100417798 (GRCh38)
15:100958003 (GRCh37)
Canonical SPDI:: NC_000015.10:100417797:G:A,NC_000015.10:100417797:G:C
Gene:: CERS3 (Varview), CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.100417798G>A, NC_000015.10:g.100417798G>C, NC_000015.9:g.100958003G>A, NC_000015.9:g.100958003G>C, NG_042826.1:g.131923C>T, NG_042826.1:g.131923C>G

Select item 149069086318.

rs1490690863 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:100428534 (GRCh38)
15:100968739 (GRCh37)
Canonical SPDI:: NC_000015.10:100428533:C:T
Gene:: CERS3 (Varview), CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.100428534C>T, NC_000015.9:g.100968739C>T, NG_042826.1:g.121187G>A

Select item 149065396919.

rs1490653969 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:100385193 (GRCh38)
15:100925398 (GRCh37)
Canonical SPDI:: NC_000015.10:100385192:C:T
Gene:: CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.100385193C>T, NC_000015.9:g.100925398C>T

Select item 149062201620.

rs1490622016 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:100405209 (GRCh38)
15:100945414 (GRCh37)
Canonical SPDI:: NC_000015.10:100405208:T:A
Gene:: CERS3 (Varview), CERS3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00093/11 (ALFA)
HGVS:: NC_000015.10:g.100405209T>A, NC_000015.9:g.100945414T>A, NG_042826.1:g.144512A>T

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