SNP Links for Gene (Select 102724264) - SNP

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Links from Gene

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Select item 14899547581.

rs1489954758 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:43779785 (GRCh38)
10:44275233 (GRCh37)
Canonical SPDI:: NC_000010.11:43779784:A:G
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000061/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000010.11:g.43779785A>G, NC_000010.10:g.44275233A>G, XR_945906.4:n.840A>G, XR_945906.3:n.839A>G, XR_945906.2:n.825A>G, XR_945906.1:n.825A>G

Select item 14897605442.

rs1489760544 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 10:43777873 (GRCh38)
10:44273321 (GRCh37)
Canonical SPDI:: NC_000010.11:43777872:T:G
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.43777873T>G, NC_000010.10:g.44273321T>G

Select item 14886987023.

rs1488698702 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GG [Show Flanks]
Chromosome:: 10:43779300 (GRCh38)
10:44274749 (GRCh37)
Canonical SPDI:: NC_000010.11:43779300:GGG:GGGGG
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GGGGG=0./0 (ALFA)
GG=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.43779302_43779303dup, NC_000010.10:g.44274750_44274751dup, XR_945906.4:n.357_358dup, XR_945906.3:n.356_357dup, XR_945906.2:n.342_343dup, XR_945906.1:n.342_343dup

Select item 14880224984.

rs1488022498 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:43778799 (GRCh38)
10:44274247 (GRCh37)
Canonical SPDI:: NC_000010.11:43778798:G:C
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.43778799G>C, NC_000010.10:g.44274247G>C, NR_134483.1:n.104C>G, NR_134484.1:n.27C>G

Select item 14869507305.

rs1486950730 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:43777271 (GRCh38)
10:44272719 (GRCh37)
Canonical SPDI:: NC_000010.11:43777270:C:T
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000010.11:g.43777271C>T, NC_000010.10:g.44272719C>T

Select item 14867386846.

rs1486738684 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:43780168 (GRCh38)
10:44275616 (GRCh37)
Canonical SPDI:: NC_000010.11:43780167:C:A
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.43780168C>A, NC_000010.10:g.44275616C>A

Select item 14865719937.

rs1486571993 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:43780517 (GRCh38)
10:44275965 (GRCh37)
Canonical SPDI:: NC_000010.11:43780516:G:A
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000108/2 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000029/4 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000010.11:g.43780517G>A, NC_000010.10:g.44275965G>A

Select item 14862524248.

rs1486252424 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:43780536 (GRCh38)
10:44275984 (GRCh37)
Canonical SPDI:: NC_000010.11:43780535:C:T
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.43780536C>T, NC_000010.10:g.44275984C>T

Select item 14856716919.

rs1485671691 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:43779654 (GRCh38)
10:44275102 (GRCh37)
Canonical SPDI:: NC_000010.11:43779653:G:A
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.43779654G>A, NC_000010.10:g.44275102G>A, XR_945906.4:n.709G>A, XR_945906.3:n.708G>A, XR_945906.2:n.694G>A, XR_945906.1:n.694G>A

Select item 148469041910.

rs1484690419 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 10:43780147 (GRCh38)
10:44275595 (GRCh37)
Canonical SPDI:: NC_000010.11:43780146:T:G
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.43780147T>G, NC_000010.10:g.44275595T>G

Select item 148390351211.

rs1483903512 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:43779347 (GRCh38)
10:44274795 (GRCh37)
Canonical SPDI:: NC_000010.11:43779346:C:G
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
G=0.00006/1 (TOMMO)
HGVS:: NC_000010.11:g.43779347C>G, NC_000010.10:g.44274795C>G, XR_945906.4:n.402C>G, XR_945906.3:n.401C>G, XR_945906.2:n.387C>G, XR_945906.1:n.387C>G

Select item 148297597712.

rs1482975977 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 10:43779636 (GRCh38)
10:44275084 (GRCh37)
Canonical SPDI:: NC_000010.11:43779635:A:C,NC_000010.11:43779635:A:G
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
HGVS:: NC_000010.11:g.43779636A>C, NC_000010.11:g.43779636A>G, NC_000010.10:g.44275084A>C, NC_000010.10:g.44275084A>G, XR_945906.4:n.691A>C, XR_945906.4:n.691A>G, XR_945906.3:n.690A>C, XR_945906.3:n.690A>G, XR_945906.2:n.676A>C, XR_945906.2:n.676A>G, XR_945906.1:n.676A>C, XR_945906.1:n.676A>G

Select item 148039368013.

rs1480393680 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 10:43779082 (GRCh38)
10:44274530 (GRCh37)
Canonical SPDI:: NC_000010.11:43779081:G:A,NC_000010.11:43779081:G:C
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0./0 (GnomAD)
HGVS:: NC_000010.11:g.43779082G>A, NC_000010.11:g.43779082G>C, NC_000010.10:g.44274530G>A, NC_000010.10:g.44274530G>C, XR_945906.4:n.137G>A, XR_945906.4:n.137G>C, XR_945906.3:n.136G>A, XR_945906.3:n.136G>C, XR_945906.2:n.122G>A, XR_945906.2:n.122G>C, XR_945906.1:n.122G>A, XR_945906.1:n.122G>C

Select item 147964690414.

rs1479646904 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->TTTT
Chromosome:: no mapping
Canonical SPDI:

Select item 147961563715.

rs1479615637 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:43779663 (GRCh38)
10:44275111 (GRCh37)
Canonical SPDI:: NC_000010.11:43779662:C:G
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.43779663C>G, NC_000010.10:g.44275111C>G, XR_945906.4:n.718C>G, XR_945906.3:n.717C>G, XR_945906.2:n.703C>G, XR_945906.1:n.703C>G

Select item 147922674716.

rs1479226747 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:43777081 (GRCh38)
10:44272529 (GRCh37)
Canonical SPDI:: NC_000010.11:43777080:C:T
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.43777081C>T, NC_000010.10:g.44272529C>T

Select item 147916931317.

rs1479169313 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 10:43777637 (GRCh38)
10:44273085 (GRCh37)
Canonical SPDI:: NC_000010.11:43777636:G:A,NC_000010.11:43777636:G:T
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
T=0.000342/1 (KOREAN)
HGVS:: NC_000010.11:g.43777637G>A, NC_000010.11:g.43777637G>T, NC_000010.10:g.44273085G>A, NC_000010.10:g.44273085G>T, NR_134483.1:n.535C>T, NR_134483.1:n.535C>A, NR_134484.1:n.333C>T, NR_134484.1:n.333C>A

Select item 147909811618.

rs1479098116 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 10:43779789 (GRCh38)
10:44275237 (GRCh37)
Canonical SPDI:: NC_000010.11:43779788:C:G,NC_000010.11:43779788:C:T
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000066/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000010.11:g.43779789C>G, NC_000010.11:g.43779789C>T, NC_000010.10:g.44275237C>G, NC_000010.10:g.44275237C>T, XR_945906.4:n.844C>G, XR_945906.4:n.844C>T, XR_945906.3:n.843C>G, XR_945906.3:n.843C>T, XR_945906.2:n.829C>G, XR_945906.2:n.829C>T, XR_945906.1:n.829C>G, XR_945906.1:n.829C>T

Select item 147742746319.

rs1477427463 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:43780559 (GRCh38)
10:44276007 (GRCh37)
Canonical SPDI:: NC_000010.11:43780558:A:G
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.43780559A>G, NC_000010.10:g.44276007A>G

Select item 147726095020.

rs1477260950 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:43777851 (GRCh38)
10:44273299 (GRCh37)
Canonical SPDI:: NC_000010.11:43777850:C:T
Gene:: LINC02658 (Varview), LOC105378275 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,splice_acceptor_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.43777851C>T, NC_000010.10:g.44273299C>T