SNP Links for Gene (Select 102724507) - SNP

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Select item 14908396491.

rs1490839649 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:65142040 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65142039:T:A
Gene:: LOC102724507 (Varview), LOC105379443 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00016/8 (GnomAD)
A=0.00078/5 (1000Genomes)
A=0.00235/62 (TOMMO)
A=0.00671/12 (Korea1K)
HGVS:: NC_000009.12:g.65142040T>A

Select item 14907018012.

rs1490701801 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:65138239 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65138238:C:A
Gene:: LOC102724507 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000009.12:g.65138239C>A

Select item 14906764553.

rs1490676455 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:65142801 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65142800:T:A
Gene:: LOC102724507 (Varview), LOC105379443 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000009.12:g.65142801T>A, XR_428496.4:n.274A>T, XR_428496.3:n.272A>T, XR_428496.2:n.284A>T, XR_428496.1:n.284A>T, XR_950672.4:n.272A>T, XR_950672.3:n.270A>T, XR_950672.2:n.270A>T, XR_950672.1:n.284A>T, XR_428498.4:n.262A>T, XR_428498.3:n.262A>T, XR_428498.2:n.284A>T, XR_428498.1:n.284A>T, XR_950675.3:n.264A>T, XR_950675.2:n.264A>T, XR_950675.1:n.284A>T, XR_001746680.3:n.260A>T, XR_001746680.2:n.261A>T, XR_001746680.1:n.261A>T, XR_950674.2:n.264A>T, XR_950674.1:n.284A>T, XR_001746681.1:n.264A>T

Select item 14905392284.

rs1490539228 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 9:65140261 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65140260:C:G,NC_000009.12:65140260:C:T
Gene:: LOC102724507 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000009.12:g.65140261C>G, NC_000009.12:g.65140261C>T, XR_950675.3:n.1797G>C, XR_950675.3:n.1797G>A

Select item 14902611845.

rs1490261184 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:65135472 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65135471:G:T
Gene:: LOC102724507 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.00008/1 (ALFA)
HGVS:: NC_000009.12:g.65135472G>T, XR_428496.4:n.705C>A, XR_428496.3:n.703C>A

Select item 14902110116.

rs1490211011 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:65137684 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65137683:G:A
Gene:: LOC102724507 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00008/1 (ALFA)
A=0.00005/2 (GnomAD)
HGVS:: NC_000009.12:g.65137684G>A

Select item 14893276217.

rs1489327621 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:65143839 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65143838:T:C
Gene:: LOC102724507 (Varview), LOC105379443 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.00295/35 (ALFA)
HGVS:: NC_000009.12:g.65143839T>C

Select item 14892891518.

rs1489289151 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:65137313 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65137312:A:G
Gene:: LOC102724507 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000009.12:g.65137313A>G

Select item 14885698729.

rs1488569872 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:65137335 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65137334:G:C
Gene:: LOC102724507 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00004/1 (GnomAD)
HGVS:: NC_000009.12:g.65137335G>C

Select item 148731364810.

rs1487313648 [Homo sapiens]

Variant type:: DELINS
Alleles:: TGA>- [Show Flanks]
Chromosome:: 9:65136284 (GRCh38)
9:2 (GRCh37)
Canonical SPDI:: NC_000009.12:65136280:TGATGA:TGA
Gene:: LOC102724507 (Varview)
Functional Consequence:: downstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TGATGA=0./0 (ALFA)
-=0.00017/3 (GnomAD)
HGVS:: NC_000009.12:g.65136281TGA[1]

Select item 148726545211.

rs1487265452 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:65144711 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65144710:C:T
Gene:: LOC102724507 (Varview), LOC105379443 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.00008/2 (GnomAD)
HGVS:: NC_000009.12:g.65144711C>T

Select item 148617702912.

rs1486177029 has merged into rs1221631617 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>-,AA [Show Flanks]
Chromosome:: 9:65138493 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65138492:AAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000009.12:65138492:AAAAAAAAAAAAA:AAAAAAAAAAAAAA
Gene:: LOC102724507 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAA=0./0 (ALFA)
-=0.00114/13 (TOMMO)
-=0.00156/10 (1000Genomes)
HGVS:: NC_000009.12:g.65138505del, NC_000009.12:g.65138505dup

Select item 148604611313.

rs1486046113 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:65142113 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65142112:T:A
Gene:: LOC102724507 (Varview), LOC105379443 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000009.12:g.65142113T>A, XR_950674.2:n.297A>T, XR_950674.1:n.317A>T

Select item 148552492514.

rs1485524925 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:65137451 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65137450:A:C
Gene:: LOC102724507 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00019/5 (TOMMO)
HGVS:: NC_000009.12:g.65137451A>C

Select item 148539231815.

rs1485392318 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:65139028 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65139027:A:C
Gene:: LOC102724507 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.01416/168 (ALFA)
C=0.11379/1165 (TOMMO)
C=0.14072/94 (Korea1K)
HGVS:: NC_000009.12:g.65139028A>C

Select item 148436096416.

rs1484360964 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 9:65144370 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65144369:C:G
Gene:: LOC102724507 (Varview), LOC105379443 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000009.12:g.65144370C>G

Select item 148233208517.

rs1482332085 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:65144127 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65144126:T:C
Gene:: LOC102724507 (Varview), LOC105379443 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000009.12:g.65144127T>C, XR_428496.4:n.39A>G, XR_428496.3:n.37A>G, XR_428496.2:n.49A>G, XR_428496.1:n.49A>G, XR_950672.4:n.37A>G, XR_950672.3:n.35A>G, XR_950672.2:n.35A>G, XR_950672.1:n.49A>G, XR_428498.4:n.27A>G, XR_428498.3:n.27A>G, XR_428498.2:n.49A>G, XR_428498.1:n.49A>G, XR_950675.3:n.29A>G, XR_950675.2:n.29A>G, XR_950675.1:n.49A>G, XR_001746680.3:n.25A>G, XR_001746680.2:n.26A>G, XR_001746680.1:n.26A>G, XR_950674.2:n.29A>G, XR_950674.1:n.49A>G, XR_001746681.1:n.29A>G

Select item 148230394718.

rs1482303947 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:65142240 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65142239:C:T
Gene:: LOC102724507 (Varview), LOC105379443 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000009.12:g.65142240C>T

Select item 148206502619.

rs1482065026 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 9:65143564 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65143563:C:A,NC_000009.12:65143563:C:G
Gene:: LOC102724507 (Varview), LOC105379443 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.00202/24 (ALFA)
A=0.00056/10 (TOMMO)
HGVS:: NC_000009.12:g.65143564C>A, NC_000009.12:g.65143564C>G, NR_160671.1:n.507C>A, NR_160671.1:n.507C>G, NR_160670.1:n.507C>A, NR_160670.1:n.507C>G

Select item 148178752820.

rs1481787528 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:65141860 (GRCh38)
9:-1 (GRCh37)
Canonical SPDI:: NC_000009.12:65141859:G:A
Gene:: LOC102724507 (Varview), LOC105379443 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000009.12:g.65141860G>A

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