SNP Links for Gene (Select 102800315) - SNP

Links from Gene

Items: 1 to 20 of 2599

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Select item 14912453431.

rs1491245343 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: 2:6631775 (GRCh38)
2:6771907 (GRCh37)
Canonical SPDI:: NC_000002.12:6631774:AG:
Gene:: LINC01246 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000169/2 (ALFA)
-=0.00052/71 (GnomAD)
HGVS:: NC_000002.12:g.6631775_6631776del, NC_000002.11:g.6771907_6771908del

Select item 14909365572.

rs1490936557 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:6627659 (GRCh38)
2:6767791 (GRCh37)
Canonical SPDI:: NC_000002.12:6627658:C:T
Gene:: LINC01246 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.6627659C>T, NC_000002.11:g.6767791C>T

Select item 14898352823.

rs1489835282 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 2:6635697 (GRCh38)
2:6775829 (GRCh37)
Canonical SPDI:: NC_000002.12:6635696:A:G,NC_000002.12:6635696:A:T
Gene:: LINC01246 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
G=0.000106/2 (TOMMO)
HGVS:: NC_000002.12:g.6635697A>G, NC_000002.12:g.6635697A>T, NC_000002.11:g.6775829A>G, NC_000002.11:g.6775829A>T

Select item 14897824544.

rs1489782454 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:6635452 (GRCh38)
2:6775584 (GRCh37)
Canonical SPDI:: NC_000002.12:6635451:C:T
Gene:: LINC01246 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.6635452C>T, NC_000002.11:g.6775584C>T

Select item 14888207345.

rs1488820734 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:6626256 (GRCh38)
2:6766388 (GRCh37)
Canonical SPDI:: NC_000002.12:6626255:A:C
Gene:: LINC01246 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.6626256A>C, NC_000002.11:g.6766388A>C

Select item 14887968936.

rs1488796893 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:6630480 (GRCh38)
2:6770612 (GRCh37)
Canonical SPDI:: NC_000002.12:6630479:T:C
Gene:: LINC01246 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.6630480T>C, NC_000002.11:g.6770612T>C

Select item 14885850947.

rs1488585094 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 2:6633373 (GRCh38)
2:6773505 (GRCh37)
Canonical SPDI:: NC_000002.12:6633372:C:A
Gene:: LINC01246 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.6633373C>A, NC_000002.11:g.6773505C>A

Select item 14885449808.

rs1488544980 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 2:6626426 (GRCh38)
2:6766558 (GRCh37)
Canonical SPDI:: NC_000002.12:6626425:G:T
Gene:: LINC01246 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.6626426G>T, NC_000002.11:g.6766558G>T

Select item 14884262059.

rs1488426205 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:6629952 (GRCh38)
2:6770084 (GRCh37)
Canonical SPDI:: NC_000002.12:6629951:A:C
Gene:: LINC01246 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.6629952A>C, NC_000002.11:g.6770084A>C

Select item 148840498610.

rs1488404986 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:6634464 (GRCh38)
2:6774596 (GRCh37)
Canonical SPDI:: NC_000002.12:6634463:C:G
Gene:: LINC01246 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.6634464C>G, NC_000002.11:g.6774596C>G

Select item 148801001111.

rs1488010011 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:6631255 (GRCh38)
2:6771387 (GRCh37)
Canonical SPDI:: NC_000002.12:6631254:A:G
Gene:: LINC01246 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.6631255A>G, NC_000002.11:g.6771387A>G

Select item 148790233812.

rs1487902338 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 2:6628326 (GRCh38)
2:6768459 (GRCh37)
Canonical SPDI:: NC_000002.12:6628326:T:TT
Gene:: LINC01246 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000036/5 (GnomAD)
HGVS:: NC_000002.12:g.6628327dup, NC_000002.11:g.6768459dup

Select item 148742126313.

rs1487421263 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:6635514 (GRCh38)
2:6775646 (GRCh37)
Canonical SPDI:: NC_000002.12:6635513:T:C
Gene:: LINC01246 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.6635514T>C, NC_000002.11:g.6775646T>C

Select item 148682884214.

rs1486828842 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 2:6631383 (GRCh38)
2:6771515 (GRCh37)
Canonical SPDI:: NC_000002.12:6631382:A:T
Gene:: LINC01246 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.6631383A>T, NC_000002.11:g.6771515A>T

Select item 148661621415.

rs1486616214 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:6630331 (GRCh38)
2:6770463 (GRCh37)
Canonical SPDI:: NC_000002.12:6630330:C:T
Gene:: LINC01246 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.6630331C>T, NC_000002.11:g.6770463C>T

Select item 148658198916.

rs1486581989 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:6635222 (GRCh38)
2:6775354 (GRCh37)
Canonical SPDI:: NC_000002.12:6635221:G:A
Gene:: LINC01246 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.6635222G>A, NC_000002.11:g.6775354G>A

Select item 148647724017.

rs1486477240 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:6630830 (GRCh38)
2:6770962 (GRCh37)
Canonical SPDI:: NC_000002.12:6630829:G:C
Gene:: LINC01246 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.6630830G>C, NC_000002.11:g.6770962G>C

Select item 148637414318.

rs1486374143 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:6631707 (GRCh38)
2:6771839 (GRCh37)
Canonical SPDI:: NC_000002.12:6631706:A:G
Gene:: LINC01246 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00032/5 (TOMMO)
HGVS:: NC_000002.12:g.6631707A>G, NC_000002.11:g.6771839A>G

Select item 148633439919.

rs1486334399 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:6627918 (GRCh38)
2:6768050 (GRCh37)
Canonical SPDI:: NC_000002.12:6627917:G:A
Gene:: LINC01246 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.6627918G>A, NC_000002.11:g.6768050G>A

Select item 148627932120.

rs1486279321 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:6627007 (GRCh38)
2:6767139 (GRCh37)
Canonical SPDI:: NC_000002.12:6627006:T:C
Gene:: LINC01246 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000002.12:g.6627007T>C, NC_000002.11:g.6767139T>C

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