SNP Links for Gene (Select 10463) - SNP

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Select item 14915739361.

rs1491573936 has merged into rs772889697 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>-,GTGT [Show Flanks]
Chromosome:: 4:41998472 (GRCh38)
4:42000489 (GRCh37)
Canonical SPDI:: NC_000004.12:41998470:TGT:T,NC_000004.12:41998470:TGT:TGTGT
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.042131/688 (ALFA)
-=0.025/1 (GENOME_DK)
-=0.038333/23 (NorthernSweden)
-=0.045753/293 (1000Genomes)
-=0.048414/6762 (GnomAD)
-=0.051309/13581 (TOPMED)
-=0.158306/587 (TWINSUK)
-=0.218993/844 (ALSPAC)
HGVS:: NC_000004.12:g.41998472_41998473del, NC_000004.12:g.41998472_41998473dup, NC_000004.11:g.42000489_42000490del, NC_000004.11:g.42000489_42000490dup

Select item 14915643482.

rs1491564348 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTT [Show Flanks]
Chromosome:: 4:42004665 (GRCh38)
4:42006683 (GRCh37)
Canonical SPDI:: NC_000004.12:42004665:TT:TTCTT
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TTCTT=0./0 (ALFA)
TTC=0.00092/2 (GnomAD)
HGVS:: NC_000004.12:g.42004667_42004668insCTT, NC_000004.11:g.42006684_42006685insCTT

Select item 14915629213.

rs1491562921 has merged into rs35993518 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAA>-,A,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 4:42058113 (GRCh38)
4:42060130 (GRCh37)
Canonical SPDI:: NC_000004.12:42058100:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000004.12:42058100:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000004.12:42058100:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000004.12:42058100:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000004.12:42058100:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000004.12:42058100:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000004.12:42058100:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000004.12:42058100:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000004.12:42058100:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000004.12:42058100:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000004.12:42058100:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000004.12:42058100:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000004.12:g.42058113_42058121del, NC_000004.12:g.42058114_42058121del, NC_000004.12:g.42058117_42058121del, NC_000004.12:g.42058118_42058121del, NC_000004.12:g.42058119_42058121del, NC_000004.12:g.42058120_42058121del, NC_000004.12:g.42058121del, NC_000004.12:g.42058121dup, NC_000004.12:g.42058120_42058121dup, NC_000004.12:g.42058119_42058121dup, NC_000004.12:g.42058117_42058121dup, NC_000004.12:g.42058112_42058121dup, NC_000004.11:g.42060130_42060138del, NC_000004.11:g.42060131_42060138del, NC_000004.11:g.42060134_42060138del, NC_000004.11:g.42060135_42060138del, NC_000004.11:g.42060136_42060138del, NC_000004.11:g.42060137_42060138del, NC_000004.11:g.42060138del, NC_000004.11:g.42060138dup, NC_000004.11:g.42060137_42060138dup, NC_000004.11:g.42060136_42060138dup, NC_000004.11:g.42060134_42060138dup, NC_000004.11:g.42060129_42060138dup

Select item 14915500214.

rs1491550021 has merged into rs34964085 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAAA,AAAAAAAA [Show Flanks]
Chromosome:: 4:42045595 (GRCh38)
4:42047612 (GRCh37)
Canonical SPDI:: NC_000004.12:42045584:AAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000004.12:42045584:AAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000004.12:42045584:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000004.12:42045584:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000004.12:42045584:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000004.12:42045584:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000004.12:42045584:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000004.12:42045584:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAA=0./0 (ALFA)
AA=0.2715/158 (NorthernSweden)
AA=0.3093/1549 (1000Genomes)
AA=0.325/13 (GENOME_DK)
HGVS:: NC_000004.12:g.42045595_42045600del, NC_000004.12:g.42045596_42045600del, NC_000004.12:g.42045597_42045600del, NC_000004.12:g.42045598_42045600del, NC_000004.12:g.42045599_42045600del, NC_000004.12:g.42045600del, NC_000004.12:g.42045600dup, NC_000004.12:g.42045599_42045600dup, NC_000004.11:g.42047612_42047617del, NC_000004.11:g.42047613_42047617del, NC_000004.11:g.42047614_42047617del, NC_000004.11:g.42047615_42047617del, NC_000004.11:g.42047616_42047617del, NC_000004.11:g.42047617del, NC_000004.11:g.42047617dup, NC_000004.11:g.42047616_42047617dup

Select item 14915468905.

rs1491546890 [Homo sapiens]

Variant type:: INS
Alleles:: ->C,G [Show Flanks]
Chromosome:: 4:42014556 (GRCh38)
4:42016574 (GRCh37)
Canonical SPDI:: NC_000004.12:42014556::C,NC_000004.12:42014556::G
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
G=0.00003/1 (GnomAD)
HGVS:: NC_000004.12:g.42014556_42014557insC, NC_000004.12:g.42014556_42014557insG, NC_000004.11:g.42016573_42016574insC, NC_000004.11:g.42016573_42016574insG

Select item 14915216006.

rs1491521600 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 4:42040795 (GRCh38)
4:42042812 (GRCh37)
Canonical SPDI:: NC_000004.12:42040794:CA:
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.03659/434 (ALFA)
HGVS:: NC_000004.12:g.42040795_42040796del, NC_000004.11:g.42042812_42042813del

Select item 14915108807.

rs1491510880 has merged into rs755795146 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA,AAAAAA,AAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 4:42040808 (GRCh38)
4:42042825 (GRCh37)
Canonical SPDI:: NC_000004.12:42040795:AAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000004.12:42040795:AAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000004.12:42040795:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000004.12:42040795:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000004.12:42040795:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000004.12:42040795:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAAA=0./0 (ALFA)
-=0.00022/3 (TOMMO)
HGVS:: NC_000004.12:g.42040808_42040810del, NC_000004.12:g.42040809_42040810del, NC_000004.12:g.42040810del, NC_000004.12:g.42040810dup, NC_000004.12:g.42040808_42040810dup, NC_000004.12:g.42040810_42040811insAAAAAAAAAAAAAAAA, NC_000004.11:g.42042825_42042827del, NC_000004.11:g.42042826_42042827del, NC_000004.11:g.42042827del, NC_000004.11:g.42042827dup, NC_000004.11:g.42042825_42042827dup, NC_000004.11:g.42042827_42042828insAAAAAAAAAAAAAAAA

Select item 14914403198.

rs1491440319 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->TTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTT
Chromosome:: no mapping
Canonical SPDI:

Select item 14913595739.

rs1491359573 has merged into rs772889697 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>-,GTGT [Show Flanks]
Chromosome:: 4:41998472 (GRCh38)
4:42000489 (GRCh37)
Canonical SPDI:: NC_000004.12:41998470:TGT:T,NC_000004.12:41998470:TGT:TGTGT
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.042131/688 (ALFA)
-=0.025/1 (GENOME_DK)
-=0.038333/23 (NorthernSweden)
-=0.045753/293 (1000Genomes)
-=0.048414/6762 (GnomAD)
-=0.051309/13581 (TOPMED)
-=0.158306/587 (TWINSUK)
-=0.218993/844 (ALSPAC)
HGVS:: NC_000004.12:g.41998472_41998473del, NC_000004.12:g.41998472_41998473dup, NC_000004.11:g.42000489_42000490del, NC_000004.11:g.42000489_42000490dup

Select item 149130469910.

rs1491304699 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 4:42040810 (GRCh38)
4:42042828 (GRCh37)
Canonical SPDI:: NC_000004.12:42040810:G:GG
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000004.12:g.42040811dup, NC_000004.11:g.42042828dup

Select item 149130204811.

rs1491302048 has merged into rs1162707677 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTTTTTTTTTTTTTT>-,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 4:42075068 (GRCh38)
4:42077085 (GRCh37)
Canonical SPDI:: NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42075059:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.42075068_42075091del, NC_000004.12:g.42075073_42075091del, NC_000004.12:g.42075074_42075091del, NC_000004.12:g.42075075_42075091del, NC_000004.12:g.42075077_42075091del, NC_000004.12:g.42075078_42075091del, NC_000004.12:g.42075079_42075091del, NC_000004.12:g.42075080_42075091del, NC_000004.12:g.42075081_42075091del, NC_000004.12:g.42075082_42075091del, NC_000004.12:g.42075083_42075091del, NC_000004.12:g.42075084_42075091del, NC_000004.12:g.42075085_42075091del, NC_000004.12:g.42075086_42075091del, NC_000004.12:g.42075087_42075091del, NC_000004.12:g.42075088_42075091del, NC_000004.12:g.42075089_42075091del, NC_000004.12:g.42075090_42075091del, NC_000004.12:g.42075091del, NC_000004.12:g.42075091dup, NC_000004.12:g.42075090_42075091dup, NC_000004.12:g.42075089_42075091dup, NC_000004.12:g.42075087_42075091dup, NC_000004.11:g.42077085_42077108del, NC_000004.11:g.42077090_42077108del, NC_000004.11:g.42077091_42077108del, NC_000004.11:g.42077092_42077108del, NC_000004.11:g.42077094_42077108del, NC_000004.11:g.42077095_42077108del, NC_000004.11:g.42077096_42077108del, NC_000004.11:g.42077097_42077108del, NC_000004.11:g.42077098_42077108del, NC_000004.11:g.42077099_42077108del, NC_000004.11:g.42077100_42077108del, NC_000004.11:g.42077101_42077108del, NC_000004.11:g.42077102_42077108del, NC_000004.11:g.42077103_42077108del, NC_000004.11:g.42077104_42077108del, NC_000004.11:g.42077105_42077108del, NC_000004.11:g.42077106_42077108del, NC_000004.11:g.42077107_42077108del, NC_000004.11:g.42077108del, NC_000004.11:g.42077108dup, NC_000004.11:g.42077107_42077108dup, NC_000004.11:g.42077106_42077108dup, NC_000004.11:g.42077104_42077108dup

Select item 149127045212.

rs1491270452 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 4:42071675 (GRCh38)
4:42073692 (GRCh37)
Canonical SPDI:: NC_000004.12:42071674:CA:
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0.00422/50 (ALFA)
HGVS:: NC_000004.12:g.42071675_42071676del, NC_000004.11:g.42073692_42073693del

Select item 149127021113.

rs1491270211 has merged into rs56891419 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 4:42071687 (GRCh38)
4:42073704 (GRCh37)
Canonical SPDI:: NC_000004.12:42071675:AAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000004.12:42071675:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000004.12:42071675:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000004.12:42071675:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000004.12:42071675:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000004.12:42071675:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000004.12:42071675:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000004.12:42071675:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000004.12:42071675:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000004.12:42071675:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: SLC30A9 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
AA=0.3125/180 (NorthernSweden)
AA=0.3229/1617 (1000Genomes)
AA=0.325/13 (GENOME_DK)
HGVS:: NC_000004.12:g.42071687_42071692del, NC_000004.12:g.42071688_42071692del, NC_000004.12:g.42071689_42071692del, NC_000004.12:g.42071690_42071692del, NC_000004.12:g.42071691_42071692del, NC_000004.12:g.42071692del, NC_000004.12:g.42071692dup, NC_000004.12:g.42071691_42071692dup, NC_000004.12:g.42071690_42071692dup, NC_000004.12:g.42071685_42071692dup, NC_000004.11:g.42073704_42073709del, NC_000004.11:g.42073705_42073709del, NC_000004.11:g.42073706_42073709del, NC_000004.11:g.42073707_42073709del, NC_000004.11:g.42073708_42073709del, NC_000004.11:g.42073709del, NC_000004.11:g.42073709dup, NC_000004.11:g.42073708_42073709dup, NC_000004.11:g.42073707_42073709dup, NC_000004.11:g.42073702_42073709dup

Select item 149121889314.

rs1491218893 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 4:42045584 (GRCh38)
4:42047601 (GRCh37)
Canonical SPDI:: NC_000004.12:42045583:TA:
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000004.12:g.42045584_42045585del, NC_000004.11:g.42047601_42047602del

Select item 149121433015.

rs1491214330 has merged into rs71198699 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTT>-,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 4:42004669 (GRCh38)
4:42006686 (GRCh37)
Canonical SPDI:: NC_000004.12:42004664:TTTTTTTTTTTTT:TTTT,NC_000004.12:42004664:TTTTTTTTTTTTT:TTTTTTTTT,NC_000004.12:42004664:TTTTTTTTTTTTT:TTTTTTTTTT,NC_000004.12:42004664:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000004.12:42004664:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000004.12:42004664:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000004.12:42004664:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000004.12:42004664:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000004.12:42004664:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000004.12:42004664:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000004.12:42004664:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000004.12:42004664:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42004664:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42004664:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42004664:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42004664:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTT=0./0 (ALFA)
T=0.1344/673 (1000Genomes)
HGVS:: NC_000004.12:g.42004669_42004677del, NC_000004.12:g.42004674_42004677del, NC_000004.12:g.42004675_42004677del, NC_000004.12:g.42004676_42004677del, NC_000004.12:g.42004677del, NC_000004.12:g.42004677dup, NC_000004.12:g.42004676_42004677dup, NC_000004.12:g.42004675_42004677dup, NC_000004.12:g.42004674_42004677dup, NC_000004.12:g.42004673_42004677dup, NC_000004.12:g.42004672_42004677dup, NC_000004.12:g.42004670_42004677dup, NC_000004.12:g.42004669_42004677dup, NC_000004.12:g.42004668_42004677dup, NC_000004.12:g.42004677_42004678insTTTTTTTTTTTTTTTTTTTT, NC_000004.12:g.42004677_42004678insTTTTTTTTTTTTTTTTTTTTT, NC_000004.11:g.42006686_42006694del, NC_000004.11:g.42006691_42006694del, NC_000004.11:g.42006692_42006694del, NC_000004.11:g.42006693_42006694del, NC_000004.11:g.42006694del, NC_000004.11:g.42006694dup, NC_000004.11:g.42006693_42006694dup, NC_000004.11:g.42006692_42006694dup, NC_000004.11:g.42006691_42006694dup, NC_000004.11:g.42006690_42006694dup, NC_000004.11:g.42006689_42006694dup, NC_000004.11:g.42006687_42006694dup, NC_000004.11:g.42006686_42006694dup, NC_000004.11:g.42006685_42006694dup, NC_000004.11:g.42006694_42006695insTTTTTTTTTTTTTTTTTTTT, NC_000004.11:g.42006694_42006695insTTTTTTTTTTTTTTTTTTTTT

Select item 149117826216.

rs1491178262 [Homo sapiens]

Variant type:: INS
Alleles:: ->A,ATA,ATATA,ATATATA,ATATATATA,ATATATATATA,ATATATATATATA,ATATATATATATATA [Show Flanks]
Chromosome:: 4:42075060 (GRCh38)
4:42077078 (GRCh37)
Canonical SPDI:: NC_000004.12:42075060::A,NC_000004.12:42075060::ATA,NC_000004.12:42075060::ATATA,NC_000004.12:42075060::ATATATA,NC_000004.12:42075060::ATATATATA,NC_000004.12:42075060::ATATATATATA,NC_000004.12:42075060::ATATATATATATA,NC_000004.12:42075060::ATATATATATATATA
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATA=0./0 (ALFA)
HGVS:: NC_000004.12:g.42075060_42075061insA, NC_000004.12:g.42075060_42075061insATA, NC_000004.12:g.42075060_42075061insATATA, NC_000004.12:g.42075060_42075061insATATATA, NC_000004.12:g.42075060_42075061insATATATATA, NC_000004.12:g.42075060_42075061insATATATATATA, NC_000004.12:g.42075060_42075061insATATATATATATA, NC_000004.12:g.42075060_42075061insATATATATATATATA, NC_000004.11:g.42077077_42077078insA, NC_000004.11:g.42077077_42077078insATA, NC_000004.11:g.42077077_42077078insATATA, NC_000004.11:g.42077077_42077078insATATATA, NC_000004.11:g.42077077_42077078insATATATATA, NC_000004.11:g.42077077_42077078insATATATATATA, NC_000004.11:g.42077077_42077078insATATATATATATA, NC_000004.11:g.42077077_42077078insATATATATATATATA

Select item 149117416017.

rs1491174160 has merged into rs36063492 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA,AAAAA,AAAAAA [Show Flanks]
Chromosome:: 4:42014567 (GRCh38)
4:42016584 (GRCh37)
Canonical SPDI:: NC_000004.12:42014555:AAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000004.12:42014555:AAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000004.12:42014555:AAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000004.12:42014555:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000004.12:42014555:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000004.12:42014555:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
-=0.4/16 (GENOME_DK)
-=0.4401/2204 (1000Genomes)
HGVS:: NC_000004.12:g.42014567_42014569del, NC_000004.12:g.42014568_42014569del, NC_000004.12:g.42014569del, NC_000004.12:g.42014569dup, NC_000004.12:g.42014568_42014569dup, NC_000004.12:g.42014567_42014569dup, NC_000004.11:g.42016584_42016586del, NC_000004.11:g.42016585_42016586del, NC_000004.11:g.42016586del, NC_000004.11:g.42016586dup, NC_000004.11:g.42016585_42016586dup, NC_000004.11:g.42016584_42016586dup

Select item 149116865218.

rs1491168652 has merged into rs71200203 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,T,TT,TTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 4:42072828 (GRCh38)
4:42074845 (GRCh37)
Canonical SPDI:: NC_000004.12:42072812:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000004.12:42072812:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000004.12:42072812:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000004.12:42072812:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000004.12:42072812:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000004.12:42072812:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42072812:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42072812:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000004.12:42072812:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: SLC30A9 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTTT=0./0 (ALFA)
T=0.3764/1885 (1000Genomes)
HGVS:: NC_000004.12:g.42072828_42072831del, NC_000004.12:g.42072829_42072831del, NC_000004.12:g.42072830_42072831del, NC_000004.12:g.42072831del, NC_000004.12:g.42072831dup, NC_000004.12:g.42072830_42072831dup, NC_000004.12:g.42072829_42072831dup, NC_000004.12:g.42072813_42072831T[26]GTTTTTTTTTTTTTTTTTTTTTTTTTTT[1], NC_000004.12:g.42072831_42072832insTTTTTTTTTTTTTTTTTTTTTTT, NC_000004.11:g.42074845_42074848del, NC_000004.11:g.42074846_42074848del, NC_000004.11:g.42074847_42074848del, NC_000004.11:g.42074848del, NC_000004.11:g.42074848dup, NC_000004.11:g.42074847_42074848dup, NC_000004.11:g.42074846_42074848dup, NC_000004.11:g.42074830_42074848T[26]GTTTTTTTTTTTTTTTTTTTTTTTTTTT[1], NC_000004.11:g.42074848_42074849insTTTTTTTTTTTTTTTTTTTTTTT

Select item 149108784219.

rs1491087842 has merged into rs33970836 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAAAAA,AAAAAAAAA [Show Flanks]
Chromosome:: 4:42018994 (GRCh38)
4:42021011 (GRCh37)
Canonical SPDI:: NC_000004.12:42018985:AAAAAAAAAA:AAAAAAAA,NC_000004.12:42018985:AAAAAAAAAA:AAAAAAAAA,NC_000004.12:42018985:AAAAAAAAAA:AAAAAAAAAAA,NC_000004.12:42018985:AAAAAAAAAA:AAAAAAAAAAAA,NC_000004.12:42018985:AAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000004.12:42018985:AAAAAAAAAA:AAAAAAAAAAAAAAAAA
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAA=0./0 (ALFA)
A=0.03344/560 (TOMMO)
A=0.28464/1327 (1000Genomes)
A=0.35/14 (GENOME_DK)
HGVS:: NC_000004.12:g.42018994_42018995del, NC_000004.12:g.42018995del, NC_000004.12:g.42018995dup, NC_000004.12:g.42018994_42018995dup, NC_000004.12:g.42018990_42018995dup, NC_000004.12:g.42018989_42018995dup, NC_000004.11:g.42021011_42021012del, NC_000004.11:g.42021012del, NC_000004.11:g.42021012dup, NC_000004.11:g.42021011_42021012dup, NC_000004.11:g.42021007_42021012dup, NC_000004.11:g.42021006_42021012dup

Select item 149105268520.

rs1491052685 [Homo sapiens]

Variant type:: DEL
Alleles:: AC>- [Show Flanks]
Chromosome:: 4:42058121 (GRCh38)
4:42060138 (GRCh37)
Canonical SPDI:: NC_000004.12:42058120:AC:
Gene:: SLC30A9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000004.12:g.42058121_42058122del, NC_000004.11:g.42060138_42060139del

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