SNP Links for Gene (Select 10479) - SNP

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Select item 14910022531.

rs1491002253 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:136016156 (GRCh38)
X:135098315 (GRCh37)
Canonical SPDI:: NC_000023.11:136016155:G:A
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000034/9 (TOPMED)
A=0.000039/4 (GnomAD)
HGVS:: NC_000023.11:g.136016156G>A, NC_000023.10:g.135098315G>A, NG_017160.1:g.35730G>A, NW_004070887.1:g.947299G>A

Select item 14908550512.

rs1490855051 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: X:136041000 (GRCh38)
X:135123159 (GRCh37)
Canonical SPDI:: NC_000023.11:136040999:A:T
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000023.11:g.136041000A>T, NC_000023.10:g.135123159A>T, NG_017160.1:g.60574A>T, NW_004070887.1:g.972143A>T

Select item 14908296573.

rs1490829657 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:135983941 (GRCh38)
X:135066100 (GRCh37)
Canonical SPDI:: NC_000023.11:135983940:T:C
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.135983941T>C, NC_000023.10:g.135066100T>C, NG_017160.1:g.3515T>C, NW_004070887.1:g.915084T>C

Select item 14907331334.

rs1490733133 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: X:136029108 (GRCh38)
X:135111267 (GRCh37)
Canonical SPDI:: NC_000023.11:136029107:AAAAAA:AAAAA
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AAAAA=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.136029113del, NC_000023.10:g.135111272del, NG_017160.1:g.48687del, NW_004070887.1:g.960256del

Select item 14907090435.

rs1490709043 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: X:136005118 (GRCh38)
X:135087277 (GRCh37)
Canonical SPDI:: NC_000023.11:136005117:T:G
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.136005118T>G, NC_000023.10:g.135087277T>G, NG_017160.1:g.24692T>G, NW_004070887.1:g.936261T>G

Select item 14905913256.

rs1490591325 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:135995427 (GRCh38)
X:135077586 (GRCh37)
Canonical SPDI:: NC_000023.11:135995426:A:G
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000029/3 (GnomAD)
G=0.00036/5 (TOMMO)
HGVS:: NC_000023.11:g.135995427A>G, NC_000023.10:g.135077586A>G, NG_017160.1:g.15001A>G, NW_004070887.1:g.926570A>G

Select item 14905247037.

rs1490524703 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:135993705 (GRCh38)
X:135075864 (GRCh37)
Canonical SPDI:: NC_000023.11:135993704:T:C
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000023.11:g.135993705T>C, NC_000023.10:g.135075864T>C, NG_017160.1:g.13279T>C, NW_004070887.1:g.924848T>C

Select item 14905226638.

rs1490522663 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:135973878 (GRCh38)
X:135056037 (GRCh37)
Canonical SPDI:: NC_000023.11:135973877:A:G
Gene:: SLC9A6 (Varview), MMGT1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.135973878A>G, NC_000023.10:g.135056037A>G, NW_004070887.1:g.905021A>G, NM_173470.3:c.-203T>C, NM_173470.2:c.-203T>C, NM_173470.1:c.-203T>C, NM_001400909.1:c.-337A>G

Select item 14904732869.

rs1490473286 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:136039950 (GRCh38)
X:135122109 (GRCh37)
Canonical SPDI:: NC_000023.11:136039949:C:T
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.136039950C>T, NC_000023.10:g.135122109C>T, NG_017160.1:g.59524C>T, NW_004070887.1:g.971093C>T

Select item 149046045110.

rs1490460451 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: X:136015353 (GRCh38)
X:135097512 (GRCh37)
Canonical SPDI:: NC_000023.11:136015352:T:G
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.136015353T>G, NC_000023.10:g.135097512T>G, NG_017160.1:g.34927T>G, NW_004070887.1:g.946496T>G

Select item 149037583611.

rs1490375836 [Homo sapiens]

Variant type:: DEL
Alleles:: GCTTGGC>- [Show Flanks]
Chromosome:: X:136041623 (GRCh38)
X:135123782 (GRCh37)
Canonical SPDI:: NC_000023.11:136041622:GCTTGGC:
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000023.11:g.136041623_136041629del, NC_000023.10:g.135123782_135123788del, NG_017160.1:g.61197_61203del, NW_004070887.1:g.972766_972772del

Select item 149033513812.

rs1490335138 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:135984760 (GRCh38)
X:135066919 (GRCh37)
Canonical SPDI:: NC_000023.11:135984759:T:A
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000142/2 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.135984760T>A, NC_000023.10:g.135066919T>A, NG_017160.1:g.4334T>A, NW_004070887.1:g.915903T>A

Select item 149031216713.

rs1490312167 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:136004269 (GRCh38)
X:135086428 (GRCh37)
Canonical SPDI:: NC_000023.11:136004268:A:G
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.136004269A>G, NC_000023.10:g.135086428A>G, NG_017160.1:g.23843A>G, NW_004070887.1:g.935412A>G

Select item 149019247914.

rs1490192479 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:136027903 (GRCh38)
X:135110062 (GRCh37)
Canonical SPDI:: NC_000023.11:136027902:C:T
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.136027903C>T, NC_000023.10:g.135110062C>T, NG_017160.1:g.47477C>T, NW_004070887.1:g.959046C>T

Select item 149014506015.

rs1490145060 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:136029816 (GRCh38)
X:135111975 (GRCh37)
Canonical SPDI:: NC_000023.11:136029815:G:A
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000023.11:g.136029816G>A, NC_000023.10:g.135111975G>A, NG_017160.1:g.49390G>A, NW_004070887.1:g.960959G>A

Select item 149010200016.

rs1490102000 has merged into rs1167208674 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: X:135996036 (GRCh38)
X:135078195 (GRCh37)
Canonical SPDI:: NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000023.11:135996023:TTTTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000023.11:g.135996036_135996049del, NC_000023.11:g.135996037_135996049del, NC_000023.11:g.135996038_135996049del, NC_000023.11:g.135996039_135996049del, NC_000023.11:g.135996040_135996049del, NC_000023.11:g.135996041_135996049del, NC_000023.11:g.135996043_135996049del, NC_000023.11:g.135996044_135996049del, NC_000023.11:g.135996045_135996049del, NC_000023.11:g.135996046_135996049del, NC_000023.11:g.135996047_135996049del, NC_000023.11:g.135996048_135996049del, NC_000023.11:g.135996049del, NC_000023.11:g.135996049dup, NC_000023.11:g.135996048_135996049dup, NC_000023.11:g.135996047_135996049dup, NC_000023.11:g.135996046_135996049dup, NC_000023.11:g.135996045_135996049dup, NC_000023.11:g.135996024_135996049dup, NC_000023.10:g.135078195_135078208del, NC_000023.10:g.135078196_135078208del, NC_000023.10:g.135078197_135078208del, NC_000023.10:g.135078198_135078208del, NC_000023.10:g.135078199_135078208del, NC_000023.10:g.135078200_135078208del, NC_000023.10:g.135078202_135078208del, NC_000023.10:g.135078203_135078208del, NC_000023.10:g.135078204_135078208del, NC_000023.10:g.135078205_135078208del, NC_000023.10:g.135078206_135078208del, NC_000023.10:g.135078207_135078208del, NC_000023.10:g.135078208del, NC_000023.10:g.135078208dup, NC_000023.10:g.135078207_135078208dup, NC_000023.10:g.135078206_135078208dup, NC_000023.10:g.135078205_135078208dup, NC_000023.10:g.135078204_135078208dup, NC_000023.10:g.135078183_135078208dup, NG_017160.1:g.15610_15623del, NG_017160.1:g.15611_15623del, NG_017160.1:g.15612_15623del, NG_017160.1:g.15613_15623del, NG_017160.1:g.15614_15623del, NG_017160.1:g.15615_15623del, NG_017160.1:g.15617_15623del, NG_017160.1:g.15618_15623del, NG_017160.1:g.15619_15623del, NG_017160.1:g.15620_15623del, NG_017160.1:g.15621_15623del, NG_017160.1:g.15622_15623del, NG_017160.1:g.15623del, NG_017160.1:g.15623dup, NG_017160.1:g.15622_15623dup, NG_017160.1:g.15621_15623dup, NG_017160.1:g.15620_15623dup, NG_017160.1:g.15619_15623dup, NG_017160.1:g.15598_15623dup, NW_004070887.1:g.927179_927192del, NW_004070887.1:g.927180_927192del, NW_004070887.1:g.927181_927192del, NW_004070887.1:g.927182_927192del, NW_004070887.1:g.927183_927192del, NW_004070887.1:g.927184_927192del, NW_004070887.1:g.927186_927192del, NW_004070887.1:g.927187_927192del, NW_004070887.1:g.927188_927192del, NW_004070887.1:g.927189_927192del, NW_004070887.1:g.927190_927192del, NW_004070887.1:g.927191_927192del, NW_004070887.1:g.927192del, NW_004070887.1:g.927192dup, NW_004070887.1:g.927191_927192dup, NW_004070887.1:g.927190_927192dup, NW_004070887.1:g.927189_927192dup, NW_004070887.1:g.927188_927192dup, NW_004070887.1:g.927167_927192dup

Select item 149003600417.

rs1490036004 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:135994381 (GRCh38)
X:135076540 (GRCh37)
Canonical SPDI:: NC_000023.11:135994380:A:G
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.135994381A>G, NC_000023.10:g.135076540A>G, NG_017160.1:g.13955A>G, NW_004070887.1:g.925524A>G

Select item 148998490818.

rs1489984908 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:136040835 (GRCh38)
X:135122994 (GRCh37)
Canonical SPDI:: NC_000023.11:136040834:A:G
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000134/14 (GnomAD)
G=0.000144/38 (TOPMED)
HGVS:: NC_000023.11:g.136040835A>G, NC_000023.10:g.135122994A>G, NG_017160.1:g.60409A>G, NW_004070887.1:g.971978A>G

Select item 148994644019.

rs1489946440 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:136016002 (GRCh38)
X:135098161 (GRCh37)
Canonical SPDI:: NC_000023.11:136016001:G:A
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.136016002G>A, NC_000023.10:g.135098161G>A, NG_017160.1:g.35576G>A, NW_004070887.1:g.947145G>A

Select item 148969284020.

rs1489692840 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:136007230 (GRCh38)
X:135089389 (GRCh37)
Canonical SPDI:: NC_000023.11:136007229:C:T
Gene:: SLC9A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.136007230C>T, NC_000023.10:g.135089389C>T, NG_017160.1:g.26804C>T, NW_004070887.1:g.938373C>T

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