SNP Links for Gene (Select 10494) - SNP

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Select item 14913501641.

rs1491350164 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 2:241497875 (GRCh38)
2:242437291 (GRCh37)
Canonical SPDI:: NC_000002.12:241497875:T:TT
Gene:: STK25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0.000569/8 (ALFA)
T=0.000236/33 (GnomAD)
T=0.000287/76 (TOPMED)
HGVS:: NC_000002.12:g.241497876dup, NC_000002.11:g.242437291dup

Select item 14913195852.

rs1491319585 [Homo sapiens]

Variant type:: DELINS
Alleles:: TC>- [Show Flanks]
Chromosome:: 2:241497878 (GRCh38)
2:242437293 (GRCh37)
Canonical SPDI:: NC_000002.12:241497874:CTCTC:CTC
Gene:: STK25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CTC=0./0 (ALFA)
HGVS:: NC_000002.12:g.241497876TC[1], NC_000002.11:g.242437291TC[1]

Select item 14908936953.

rs1490893695 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:241504884 (GRCh38)
2:242444299 (GRCh37)
Canonical SPDI:: NC_000002.12:241504883:G:C
Gene:: STK25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.241504884G>C, NC_000002.11:g.242444299G>C

Select item 14908234984.

rs1490823498 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 2:241506397 (GRCh38)
2:242445812 (GRCh37)
Canonical SPDI:: NC_000002.12:241506396:A:C,NC_000002.12:241506396:A:G
Gene:: STK25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.241506397A>C, NC_000002.12:g.241506397A>G, NC_000002.11:g.242445812A>C, NC_000002.11:g.242445812A>G

Select item 14904393615.

rs1490439361 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:241498100 (GRCh38)
2:242437515 (GRCh37)
Canonical SPDI:: NC_000002.12:241498099:C:T
Gene:: STK25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.241498100C>T, NC_000002.11:g.242437515C>T

Select item 14904038586.

rs1490403858 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:241497248 (GRCh38)
2:242436663 (GRCh37)
Canonical SPDI:: NC_000002.12:241497247:G:A
Gene:: STK25 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.241497248G>A, NC_000002.11:g.242436663G>A, XM_011510493.4:c.*104C>T, XM_011510493.3:c.*104C>T, XM_011510493.2:c.*104C>T, XM_011510493.1:c.*104C>T, XM_011510496.4:c.*115C>T, XM_011510496.3:c.*115C>T, XM_011510496.2:c.*115C>T, XM_011510496.1:c.*115C>T

Select item 14903332807.

rs1490333280 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 2:241505646 (GRCh38)
2:242445061 (GRCh37)
Canonical SPDI:: NC_000002.12:241505645:A:T
Gene:: STK25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.241505646A>T, NC_000002.11:g.242445061A>T

Select item 14900960498.

rs1490096049 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 2:241496602 (GRCh38)
2:242436018 (GRCh37)
Canonical SPDI:: NC_000002.12:241496602:C:CC
Gene:: STK25 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.241496603dup, NC_000002.11:g.242436018dup, XM_011510493.4:c.*749dup, XM_011510493.3:c.*749dup, XM_011510493.2:c.*749dup, XM_011510493.1:c.*749dup, XM_011510496.4:c.*760dup, XM_011510496.3:c.*760dup, XM_011510496.2:c.*760dup, XM_011510496.1:c.*760dup

Select item 14900402889.

rs1490040288 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:241495734 (GRCh38)
2:242435149 (GRCh37)
Canonical SPDI:: NC_000002.12:241495733:G:A
Gene:: STK25 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.241495734G>A, NC_000002.11:g.242435149G>A

Select item 148998339610.

rs1489983396 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:241510434 (GRCh38)
2:242449849 (GRCh37)
Canonical SPDI:: NC_000002.12:241510433:T:G
Gene:: STK25 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000034/9 (TOPMED)
HGVS:: NC_000002.12:g.241510434T>G, NC_000002.11:g.242449849T>G

Select item 148984405411.

rs1489844054 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:241504903 (GRCh38)
2:242444318 (GRCh37)
Canonical SPDI:: NC_000002.12:241504902:A:C
Gene:: STK25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.241504903A>C, NC_000002.11:g.242444318A>C

Select item 148970733812.

rs1489707338 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:241505620 (GRCh38)
2:242445035 (GRCh37)
Canonical SPDI:: NC_000002.12:241505619:C:G
Gene:: STK25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000035/1 (TOMMO)
G=0.000342/1 (KOREAN)
G=0.000546/1 (Korea1K)
HGVS:: NC_000002.12:g.241505620C>G, NC_000002.11:g.242445035C>G

Select item 148967488713.

rs1489674887 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:241503691 (GRCh38)
2:242443106 (GRCh37)
Canonical SPDI:: NC_000002.12:241503690:C:T
Gene:: STK25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000029/3 (GnomAD)
T=0.000071/2 (TOMMO)
HGVS:: NC_000002.12:g.241503691C>T, NC_000002.11:g.242443106C>T

Select item 148915207714.

rs1489152077 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:241496261 (GRCh38)
2:242435676 (GRCh37)
Canonical SPDI:: NC_000002.12:241496260:G:A
Gene:: STK25 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000002.12:g.241496261G>A, NC_000002.11:g.242435676G>A

Select item 148891087115.

rs1488910871 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:241500388 (GRCh38)
2:242439803 (GRCh37)
Canonical SPDI:: NC_000002.12:241500387:G:C
Gene:: STK25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.00003/8 (TOPMED)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000002.12:g.241500388G>C, NC_000002.11:g.242439803G>C

Select item 148879996616.

rs1488799966 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 2:241499476 (GRCh38)
2:242438891 (GRCh37)
Canonical SPDI:: NC_000002.12:241499475:CT:
Gene:: STK25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0./0 (Korea1K)
-=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.241499476_241499477del, NC_000002.11:g.242438891_242438892del

Select item 148852449817.

rs1488524498 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:241506699 (GRCh38)
2:242446114 (GRCh37)
Canonical SPDI:: NC_000002.12:241506698:A:G
Gene:: STK25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.241506699A>G, NC_000002.11:g.242446114A>G

Select item 148821795918.

rs1488217959 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:241511297 (GRCh38)
2:242450712 (GRCh37)
Canonical SPDI:: NC_000002.12:241511296:G:A
Gene:: STK25 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.241511297G>A, NC_000002.11:g.242450712G>A

Select item 148805540619.

rs1488055406 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 2:241499093 (GRCh38)
2:242438508 (GRCh37)
Canonical SPDI:: NC_000002.12:241499092:C:A,NC_000002.12:241499092:C:G,NC_000002.12:241499092:C:T
Gene:: STK25 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.241499093C>A, NC_000002.12:g.241499093C>G, NC_000002.12:g.241499093C>T, NC_000002.11:g.242438508C>A, NC_000002.11:g.242438508C>G, NC_000002.11:g.242438508C>T, NM_006374.5:c.667G>T, NM_006374.5:c.667G>C, NM_006374.5:c.667G>A, NM_006374.4:c.667G>T, NM_006374.4:c.667G>C, NM_006374.4:c.667G>A, XM_011510493.4:c.667G>T, XM_011510493.4:c.667G>C, XM_011510493.4:c.667G>A, XM_011510493.3:c.667G>T, XM_011510493.3:c.667G>C, XM_011510493.3:c.667G>A, XM_011510493.2:c.667G>T, XM_011510493.2:c.667G>C, XM_011510493.2:c.667G>A, XM_011510493.1:c.667G>T, XM_011510493.1:c.667G>C, XM_011510493.1:c.667G>A, XM_011510496.4:c.667G>T, XM_011510496.4:c.667G>C, XM_011510496.4:c.667G>A, XM_011510496.3:c.667G>T, XM_011510496.3:c.667G>C, XM_011510496.3:c.667G>A, XM_011510496.2:c.667G>T, XM_011510496.2:c.667G>C, XM_011510496.2:c.667G>A, XM_011510496.1:c.667G>T, XM_011510496.1:c.667G>C, XM_011510496.1:c.667G>A, XM_011510495.3:c.445G>T, XM_011510495.3:c.445G>C, XM_011510495.3:c.445G>A, XM_011510495.2:c.445G>T, XM_011510495.2:c.445G>C, XM_011510495.2:c.445G>A, XM_011510495.1:c.445G>T, XM_011510495.1:c.445G>C, XM_011510495.1:c.445G>A, XM_011510494.3:c.445G>T, XM_011510494.3:c.445G>C, XM_011510494.3:c.445G>A, XM_011510494.2:c.445G>T, XM_011510494.2:c.445G>C, XM_011510494.2:c.445G>A, XM_011510494.1:c.445G>T, XM_011510494.1:c.445G>C, XM_011510494.1:c.445G>A, NM_001271978.2:c.667G>T, NM_001271978.2:c.667G>C, NM_001271978.2:c.667G>A, NM_001271978.1:c.667G>T, NM_001271978.1:c.667G>C, NM_001271978.1:c.667G>A, NM_001271977.2:c.667G>T, NM_001271977.2:c.667G>C, NM_001271977.2:c.667G>A, NM_001271977.1:c.667G>T, NM_001271977.1:c.667G>C, NM_001271977.1:c.667G>A, NM_001282306.2:c.445G>T, NM_001282306.2:c.445G>C, NM_001282306.2:c.445G>A, NM_001282306.1:c.445G>T, NM_001282306.1:c.445G>C, NM_001282306.1:c.445G>A, NM_001282307.2:c.385G>T, NM_001282307.2:c.385G>C, NM_001282307.2:c.385G>A, NM_001282307.1:c.385G>T, NM_001282307.1:c.385G>C, NM_001282307.1:c.385G>A, XM_017003170.2:c.445G>T, XM_017003170.2:c.445G>C, XM_017003170.2:c.445G>A, XM_017003170.1:c.445G>T, XM_017003170.1:c.445G>C, XM_017003170.1:c.445G>A, NM_001282308.2:c.385G>T, NM_001282308.2:c.385G>C, NM_001282308.2:c.385G>A, NM_001282308.1:c.385G>T, NM_001282308.1:c.385G>C, NM_001282308.1:c.385G>A, NM_001271979.2:c.436G>T, NM_001271979.2:c.436G>C, NM_001271979.2:c.436G>A, NM_001271979.1:c.436G>T, NM_001271979.1:c.436G>C, NM_001271979.1:c.436G>A, NM_001271980.2:c.436G>T, NM_001271980.2:c.436G>C, NM_001271980.2:c.436G>A, NM_001271980.1:c.436G>T, NM_001271980.1:c.436G>C, NM_001271980.1:c.436G>A, XM_047442925.1:c.445G>T, XM_047442925.1:c.445G>C, XM_047442925.1:c.445G>A, NR_073530.1:n.987G>T, NR_073530.1:n.987G>C, NR_073530.1:n.987G>A, NM_001282305.1:c.385G>T, NM_001282305.1:c.385G>C, NM_001282305.1:c.385G>A, NR_073531.1:n.970G>T, NR_073531.1:n.970G>C, NR_073531.1:n.970G>A, NR_073532.1:n.890G>T, NR_073532.1:n.890G>C, NR_073532.1:n.890G>A, NR_073533.1:n.828G>T, NR_073533.1:n.828G>C, NR_073533.1:n.828G>A, XM_047442924.1:c.667G>T, XM_047442924.1:c.667G>C, XM_047442924.1:c.667G>A, NP_006365.2:p.Val223Phe, NP_006365.2:p.Val223Leu, NP_006365.2:p.Val223Ile, XP_011508795.1:p.Val223Phe, XP_011508795.1:p.Val223Leu, XP_011508795.1:p.Val223Ile, XP_011508798.1:p.Val223Phe, XP_011508798.1:p.Val223Leu, XP_011508798.1:p.Val223Ile, XP_011508797.1:p.Val149Phe, XP_011508797.1:p.Val149Leu, XP_011508797.1:p.Val149Ile, XP_011508796.1:p.Val149Phe, XP_011508796.1:p.Val149Leu, XP_011508796.1:p.Val149Ile, NP_001258907.1:p.Val223Phe, NP_001258907.1:p.Val223Leu, NP_001258907.1:p.Val223Ile, NP_001258906.1:p.Val223Phe, NP_001258906.1:p.Val223Leu, NP_001258906.1:p.Val223Ile, NP_001269235.1:p.Val149Phe, NP_001269235.1:p.Val149Leu, NP_001269235.1:p.Val149Ile, NP_001269236.1:p.Val129Phe, NP_001269236.1:p.Val129Leu, NP_001269236.1:p.Val129Ile, XP_016858659.1:p.Val149Phe, XP_016858659.1:p.Val149Leu, XP_016858659.1:p.Val149Ile, NP_001269237.1:p.Val129Phe, NP_001269237.1:p.Val129Leu, NP_001269237.1:p.Val129Ile, NP_001258908.1:p.Val146Phe, NP_001258908.1:p.Val146Leu, NP_001258908.1:p.Val146Ile, NP_001258909.1:p.Val146Phe, NP_001258909.1:p.Val146Leu, NP_001258909.1:p.Val146Ile, XP_047298881.1:p.Val149Phe, XP_047298881.1:p.Val149Leu, XP_047298881.1:p.Val149Ile, NP_001269234.1:p.Val129Phe, NP_001269234.1:p.Val129Leu, NP_001269234.1:p.Val129Ile, XP_047298880.1:p.Val223Phe, XP_047298880.1:p.Val223Leu, XP_047298880.1:p.Val223Ile

Select item 148791827120.

rs1487918271 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:241501002 (GRCh38)
2:242440417 (GRCh37)
Canonical SPDI:: NC_000002.12:241501001:A:C
Gene:: STK25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000002.12:g.241501002A>C, NC_000002.11:g.242440417A>C

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