SNP Links for Gene (Select 105369507) - SNP

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Links from Gene

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Select item 14897120821.

rs1489712082 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:115395931 (GRCh38)
11:115266649 (GRCh37)
Canonical SPDI:: NC_000011.10:115395930:A:C
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.115395931A>C, NC_000011.9:g.115266649A>C

Select item 14885516302.

rs1488551630 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 11:115395255 (GRCh38)
11:115265973 (GRCh37)
Canonical SPDI:: NC_000011.10:115395254:C:A,NC_000011.10:115395254:C:G,NC_000011.10:115395254:C:T
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000011.10:g.115395255C>A, NC_000011.10:g.115395255C>G, NC_000011.10:g.115395255C>T, NC_000011.9:g.115265973C>A, NC_000011.9:g.115265973C>G, NC_000011.9:g.115265973C>T

Select item 14885198633.

rs1488519863 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:115397810 (GRCh38)
11:115268528 (GRCh37)
Canonical SPDI:: NC_000011.10:115397809:T:C
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000066/1 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000011.10:g.115397810T>C, NC_000011.9:g.115268528T>C

Select item 14851619694.

rs1485161969 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:115395795 (GRCh38)
11:115266513 (GRCh37)
Canonical SPDI:: NC_000011.10:115395794:T:A
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.115395795T>A, NC_000011.9:g.115266513T>A

Select item 14841740355.

rs1484174035 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:115395494 (GRCh38)
11:115266212 (GRCh37)
Canonical SPDI:: NC_000011.10:115395493:T:C
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.115395494T>C, NC_000011.9:g.115266212T>C

Select item 14835463796.

rs1483546379 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 11:115394877 (GRCh38)
11:115265595 (GRCh37)
Canonical SPDI:: NC_000011.10:115394876:G:
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.115394877del, NC_000011.9:g.115265595del

Select item 14831278937.

rs1483127893 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:115395943 (GRCh38)
11:115266661 (GRCh37)
Canonical SPDI:: NC_000011.10:115395942:T:G
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.115395943T>G, NC_000011.9:g.115266661T>G

Select item 14816595518.

rs1481659551 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:115397136 (GRCh38)
11:115267854 (GRCh37)
Canonical SPDI:: NC_000011.10:115397135:G:C
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.115397136G>C, NC_000011.9:g.115267854G>C

Select item 14807049109.

rs1480704910 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:115397051 (GRCh38)
11:115267769 (GRCh37)
Canonical SPDI:: NC_000011.10:115397050:C:A
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.115397051C>A, NC_000011.9:g.115267769C>A

Select item 148002678410.

rs1480026784 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ATTTTCCA [Show Flanks]
Chromosome:: 11:115396619 (GRCh38)
11:115267338 (GRCh37)
Canonical SPDI:: NC_000011.10:115396619:AATTTTCCA:AATTTTCCAATTTTCCA
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: AATTTTCCAATTTTCCA=0./0 (ALFA)
AATTTTCC=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.115396621_115396628dup, NC_000011.9:g.115267339_115267346dup

Select item 147904687211.

rs1479046872 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:115396239 (GRCh38)
11:115266957 (GRCh37)
Canonical SPDI:: NC_000011.10:115396238:G:A
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.115396239G>A, NC_000011.9:g.115266957G>A

Select item 147846346312.

rs1478463463 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:115397700 (GRCh38)
11:115268418 (GRCh37)
Canonical SPDI:: NC_000011.10:115397699:T:A
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
A=0.005476/16 (KOREAN)
HGVS:: NC_000011.10:g.115397700T>A, NC_000011.9:g.115268418T>A

Select item 147833241113.

rs1478332411 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 11:115395354 (GRCh38)
11:115266072 (GRCh37)
Canonical SPDI:: NC_000011.10:115395353:T:C,NC_000011.10:115395353:T:G
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.115395354T>C, NC_000011.10:g.115395354T>G, NC_000011.9:g.115266072T>C, NC_000011.9:g.115266072T>G

Select item 147713970414.

rs1477139704 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:115397685 (GRCh38)
11:115268403 (GRCh37)
Canonical SPDI:: NC_000011.10:115397684:T:A
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.015152/1 (GnomAD)
HGVS:: NC_000011.10:g.115397685T>A, NC_000011.9:g.115268403T>A

Select item 147636318415.

rs1476363184 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:115396369 (GRCh38)
11:115267087 (GRCh37)
Canonical SPDI:: NC_000011.10:115396368:G:T
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.115396369G>T, NC_000011.9:g.115267087G>T

Select item 147376946416.

rs1473769464 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 11:115397713 (GRCh38)
11:115268431 (GRCh37)
Canonical SPDI:: NC_000011.10:115397712:C:A,NC_000011.10:115397712:C:T
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
T=0.018072/3 (GnomAD)
HGVS:: NC_000011.10:g.115397713C>A, NC_000011.10:g.115397713C>T, NC_000011.9:g.115268431C>A, NC_000011.9:g.115268431C>T

Select item 147308449017.

rs1473084490 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:115396168 (GRCh38)
11:115266886 (GRCh37)
Canonical SPDI:: NC_000011.10:115396167:T:C
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.115396168T>C, NC_000011.9:g.115266886T>C

Select item 147162528718.

rs1471625287 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:115395216 (GRCh38)
11:115265934 (GRCh37)
Canonical SPDI:: NC_000011.10:115395215:T:C
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000026/7 (TOPMED)
HGVS:: NC_000011.10:g.115395216T>C, NC_000011.9:g.115265934T>C

Select item 147126528419.

rs1471265284 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:115396649 (GRCh38)
11:115267367 (GRCh37)
Canonical SPDI:: NC_000011.10:115396648:A:C
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.115396649A>C, NC_000011.9:g.115267367A>C

Select item 147125832620.

rs1471258326 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:115396150 (GRCh38)
11:115266868 (GRCh37)
Canonical SPDI:: NC_000011.10:115396149:T:A
Gene:: CADM1 (Varview), CADM1-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.115396150T>A, NC_000011.9:g.115266868T>A