SNP Links for Gene (Select 105369891) - SNP

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Select item 14904831801.

rs1490483180 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 12:89950101 (GRCh38)
12:90343878 (GRCh37)
Canonical SPDI:: NC_000012.12:89950100:A:
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.89950101del, NC_000012.11:g.90343878del

Select item 14882916082.

rs1488291608 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 12:89947794 (GRCh38)
12:90341571 (GRCh37)
Canonical SPDI:: NC_000012.12:89947793:A:C
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.89947794A>C, NC_000012.11:g.90341571A>C

Select item 14877975443.

rs1487797544 [Homo sapiens]

Variant type:: DELINS
Alleles:: TGCTAAT>- [Show Flanks]
Chromosome:: 12:89948462 (GRCh38)
12:90342239 (GRCh37)
Canonical SPDI:: NC_000012.12:89948459:ATTGCTAAT:AT
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AT=0.000071/1 (ALFA)
-=0.000086/12 (GnomAD)
-=0.000151/40 (TOPMED)
-=0.000312/2 (1000Genomes)
HGVS:: NC_000012.12:g.89948462_89948468del, NC_000012.11:g.90342239_90342245del

Select item 14866881634.

rs1486688163 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:89946794 (GRCh38)
12:90340571 (GRCh37)
Canonical SPDI:: NC_000012.12:89946793:G:A
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.89946794G>A, NC_000012.11:g.90340571G>A

Select item 14853125955.

rs1485312595 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 12:89946804 (GRCh38)
12:90340581 (GRCh37)
Canonical SPDI:: NC_000012.12:89946803:G:T
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000012.12:g.89946804G>T, NC_000012.11:g.90340581G>T

Select item 14847248966.

rs1484724896 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:89945774 (GRCh38)
12:90339551 (GRCh37)
Canonical SPDI:: NC_000012.12:89945773:A:G
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000012.12:g.89945774A>G, NC_000012.11:g.90339551A>G

Select item 14846770447.

rs1484677044 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 12:89949215 (GRCh38)
12:90342992 (GRCh37)
Canonical SPDI:: NC_000012.12:89949214:A:C
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000012.12:g.89949215A>C, NC_000012.11:g.90342992A>C

Select item 14828040018.

rs1482804001 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 12:89947985 (GRCh38)
12:90341762 (GRCh37)
Canonical SPDI:: NC_000012.12:89947984:G:C
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.89947985G>C, NC_000012.11:g.90341762G>C

Select item 14827920209.

rs1482792020 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:89948004 (GRCh38)
12:90341781 (GRCh37)
Canonical SPDI:: NC_000012.12:89948003:G:A
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.89948004G>A, NC_000012.11:g.90341781G>A

Select item 148198531410.

rs1481985314 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 12:89949135 (GRCh38)
12:90342912 (GRCh37)
Canonical SPDI:: NC_000012.12:89949134:G:A,NC_000012.12:89949134:G:T
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.89949135G>A, NC_000012.12:g.89949135G>T, NC_000012.11:g.90342912G>A, NC_000012.11:g.90342912G>T

Select item 148108745311.

rs1481087453 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:89946686 (GRCh38)
12:90340463 (GRCh37)
Canonical SPDI:: NC_000012.12:89946685:G:A
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000012.12:g.89946686G>A, NC_000012.11:g.90340463G>A

Select item 147891147912.

rs1478911479 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 12:89948444 (GRCh38)
12:90342221 (GRCh37)
Canonical SPDI:: NC_000012.12:89948443:CC:C
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0.000084/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.89948445del, NC_000012.11:g.90342222del

Select item 147757232613.

rs1477572326 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 12:89946661 (GRCh38)
12:90340438 (GRCh37)
Canonical SPDI:: NC_000012.12:89946660:C:G
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.89946661C>G, NC_000012.11:g.90340438C>G

Select item 147625159714.

rs1476251597 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:89947980 (GRCh38)
12:90341757 (GRCh37)
Canonical SPDI:: NC_000012.12:89947979:T:C
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.89947980T>C, NC_000012.11:g.90341757T>C

Select item 147615920215.

rs1476159202 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:89949145 (GRCh38)
12:90342922 (GRCh37)
Canonical SPDI:: NC_000012.12:89949144:A:G
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000012.12:g.89949145A>G, NC_000012.11:g.90342922A>G

Select item 147533576216.

rs1475335762 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:89946371 (GRCh38)
12:90340148 (GRCh37)
Canonical SPDI:: NC_000012.12:89946370:T:C
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.89946371T>C, NC_000012.11:g.90340148T>C

Select item 147527044317.

rs1475270443 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 12:89947503 (GRCh38)
12:90341280 (GRCh37)
Canonical SPDI:: NC_000012.12:89947502:G:A,NC_000012.12:89947502:G:T
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.89947503G>A, NC_000012.12:g.89947503G>T, NC_000012.11:g.90341280G>A, NC_000012.11:g.90341280G>T

Select item 147511518118.

rs1475115181 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 12:89946045 (GRCh38)
12:90339822 (GRCh37)
Canonical SPDI:: NC_000012.12:89946044:C:G,NC_000012.12:89946044:C:T
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.89946045C>G, NC_000012.12:g.89946045C>T, NC_000012.11:g.90339822C>G, NC_000012.11:g.90339822C>T

Select item 147329234919.

rs1473292349 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:89949940 (GRCh38)
12:90343717 (GRCh37)
Canonical SPDI:: NC_000012.12:89949939:C:T
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.89949940C>T, NC_000012.11:g.90343717C>T

Select item 147305089620.

rs1473050896 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:89947971 (GRCh38)
12:90341748 (GRCh37)
Canonical SPDI:: NC_000012.12:89947970:T:C
Gene:: LOC105369890 (Varview), LINC02399 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.89947971T>C, NC_000012.11:g.90341748T>C

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