SNP Links for Gene (Select 105370014) - SNP

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Select item 14896099001.

rs1489609900 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:118762442 (GRCh38)
12:119200247 (GRCh37)
Canonical SPDI:: NC_000012.12:118762441:C:T
Gene:: LINC02423 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.118762442C>T, NC_000012.11:g.119200247C>T

Select item 14884832182.

rs1488483218 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 12:118760726 (GRCh38)
12:119198531 (GRCh37)
Canonical SPDI:: NC_000012.12:118760725:G:T
Gene:: LINC02423 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.118760726G>T, NC_000012.11:g.119198531G>T

Select item 14865199213.

rs1486519921 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:118758884 (GRCh38)
12:119196689 (GRCh37)
Canonical SPDI:: NC_000012.12:118758883:A:G
Gene:: LINC02423 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000012.12:g.118758884A>G, NC_000012.11:g.119196689A>G, NR_134998.1:n.330T>C, NR_134999.1:n.236T>C

Select item 14863056674.

rs1486305667 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 12:118762799 (GRCh38)
12:119200604 (GRCh37)
Canonical SPDI:: NC_000012.12:118762798:C:A,NC_000012.12:118762798:C:T
Gene:: LINC02423 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.118762799C>A, NC_000012.12:g.118762799C>T, NC_000012.11:g.119200604C>A, NC_000012.11:g.119200604C>T

Select item 14853959685.

rs1485395968 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:118763396 (GRCh38)
12:119201201 (GRCh37)
Canonical SPDI:: NC_000012.12:118763395:C:T
Gene:: LINC02423 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.118763396C>T, NC_000012.11:g.119201201C>T

Select item 14847851176.

rs1484785117 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 12:118762260 (GRCh38)
12:119200065 (GRCh37)
Canonical SPDI:: NC_000012.12:118762259:A:C
Gene:: LINC02423 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.118762260A>C, NC_000012.11:g.119200065A>C

Select item 14843527647.

rs1484352764 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 12:118761822 (GRCh38)
12:119199627 (GRCh37)
Canonical SPDI:: NC_000012.12:118761821:A:G,NC_000012.12:118761821:A:T
Gene:: LINC02423 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
T=0.004673/1 (Vietnamese)
A=0.5/1 (SGDP_PRJ)
HGVS:: NC_000012.12:g.118761822A>G, NC_000012.12:g.118761822A>T, NC_000012.11:g.119199627A>G, NC_000012.11:g.119199627A>T

Select item 14842614458.

rs1484261445 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:118760482 (GRCh38)
12:119198287 (GRCh37)
Canonical SPDI:: NC_000012.12:118760481:G:A
Gene:: LINC02423 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.118760482G>A, NC_000012.11:g.119198287G>A

Select item 14827720779.

rs1482772077 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 12:118759922 (GRCh38)
12:119197727 (GRCh37)
Canonical SPDI:: NC_000012.12:118759921:T:C,NC_000012.12:118759921:T:G
Gene:: LINC02423 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000012.12:g.118759922T>C, NC_000012.12:g.118759922T>G, NC_000012.11:g.119197727T>C, NC_000012.11:g.119197727T>G

Select item 148243911610.

rs1482439116 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:118760289 (GRCh38)
12:119198094 (GRCh37)
Canonical SPDI:: NC_000012.12:118760288:G:A
Gene:: LINC02423 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000312/2 (1000Genomes)
HGVS:: NC_000012.12:g.118760289G>A, NC_000012.11:g.119198094G>A

Select item 148198798811.

rs1481987988 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:118762943 (GRCh38)
12:119200748 (GRCh37)
Canonical SPDI:: NC_000012.12:118762942:A:G
Gene:: LINC02423 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.118762943A>G, NC_000012.11:g.119200748A>G

Select item 148177882212.

rs1481778822 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 12:118759623 (GRCh38)
12:119197428 (GRCh37)
Canonical SPDI:: NC_000012.12:118759622:G:
Gene:: LINC02423 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000012.12:g.118759623del, NC_000012.11:g.119197428del

Select item 148172613813.

rs1481726138 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 12:118758652 (GRCh38)
12:119196457 (GRCh37)
Canonical SPDI:: NC_000012.12:118758651:C:A,NC_000012.12:118758651:C:T
Gene:: LINC02423 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.118758652C>A, NC_000012.12:g.118758652C>T, NC_000012.11:g.119196457C>A, NC_000012.11:g.119196457C>T

Select item 148168918614.

rs1481689186 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:118761917 (GRCh38)
12:119199722 (GRCh37)
Canonical SPDI:: NC_000012.12:118761916:G:A
Gene:: LINC02423 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.118761917G>A, NC_000012.11:g.119199722G>A

Select item 148165804215.

rs1481658042 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:118759116 (GRCh38)
12:119196921 (GRCh37)
Canonical SPDI:: NC_000012.12:118759115:G:A
Gene:: LINC02423 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.118759116G>A, NC_000012.11:g.119196921G>A

Select item 148126573916.

rs1481265739 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 12:118759345 (GRCh38)
12:119197150 (GRCh37)
Canonical SPDI:: NC_000012.12:118759344:T:A
Gene:: LINC02423 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.118759345T>A, NC_000012.11:g.119197150T>A

Select item 148120525617.

rs1481205256 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 12:118758393 (GRCh38)
12:119196198 (GRCh37)
Canonical SPDI:: NC_000012.12:118758392:G:T
Gene:: LINC02423 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.118758393G>T, NC_000012.11:g.119196198G>T

Select item 148105764118.

rs1481057641 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:118763555 (GRCh38)
12:119201360 (GRCh37)
Canonical SPDI:: NC_000012.12:118763554:A:G
Gene:: LINC02423 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000012.12:g.118763555A>G, NC_000012.11:g.119201360A>G

Select item 148049957719.

rs1480499577 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:118762652 (GRCh38)
12:119200457 (GRCh37)
Canonical SPDI:: NC_000012.12:118762651:G:A
Gene:: LINC02423 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000162/3 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000029/4 (GnomAD)
A=0.00067/3 (Estonian)
HGVS:: NC_000012.12:g.118762652G>A, NC_000012.11:g.119200457G>A

Select item 148019363320.

rs1480193633 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:118761253 (GRCh38)
12:119199058 (GRCh37)
Canonical SPDI:: NC_000012.12:118761252:G:A
Gene:: LINC02423 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000012.12:g.118761253G>A, NC_000012.11:g.119199058G>A

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