SNP Links for Gene (Select 105371708) - SNP

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Select item 14915722701.

rs1491572270 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 17:27981079 (GRCh38)
17:26308105 (GRCh37)
Canonical SPDI:: NC_000017.11:27981078:AA:
Gene:: LINC01992 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.001063/128 (GnomAD)
HGVS:: NC_000017.11:g.27981079_27981080del, NC_000017.10:g.26308105_26308106del

Select item 14915645532.

rs1491564553 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 17:27980022 (GRCh38)
17:26307048 (GRCh37)
Canonical SPDI:: NC_000017.11:27980021:AA:
Gene:: LINC01992 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000015/2 (GnomAD)
HGVS:: NC_000017.11:g.27980022_27980023del, NC_000017.10:g.26307048_26307049del

Select item 14915350003.

rs1491535000 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 17:27949735 (GRCh38)
17:26276762 (GRCh37)
Canonical SPDI:: NC_000017.11:27949735::G
Gene:: LINC01992 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000026/3 (GnomAD)
HGVS:: NC_000017.11:g.27949735_27949736insG, NC_000017.10:g.26276761_26276762insG

Select item 14914562534.

rs1491456253 has merged into rs11324076 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAA>-,AAA,AAAA,AAAAA,AAAAAA,AAAAAAAA,AAAAAAAAA [Show Flanks]
Chromosome:: 17:27976146 (GRCh38)
17:26303172 (GRCh37)
Canonical SPDI:: NC_000017.11:27976136:AAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000017.11:27976136:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000017.11:27976136:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000017.11:27976136:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000017.11:27976136:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000017.11:27976136:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000017.11:27976136:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA
Gene:: LINC01992 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000017.11:g.27976146_27976152del, NC_000017.11:g.27976149_27976152del, NC_000017.11:g.27976150_27976152del, NC_000017.11:g.27976151_27976152del, NC_000017.11:g.27976152del, NC_000017.11:g.27976152dup, NC_000017.11:g.27976151_27976152dup, NC_000017.10:g.26303172_26303178del, NC_000017.10:g.26303175_26303178del, NC_000017.10:g.26303176_26303178del, NC_000017.10:g.26303177_26303178del, NC_000017.10:g.26303178del, NC_000017.10:g.26303178dup, NC_000017.10:g.26303177_26303178dup

Select item 14914407415.

rs1491440741 has merged into rs796200567 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTT>-,TTTTTTT,TTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 17:27949743 (GRCh38)
17:26276769 (GRCh37)
Canonical SPDI:: NC_000017.11:27949734:TTTTTTTTTTTTTTTTT:TTTTTTTT,NC_000017.11:27949734:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000017.11:27949734:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000017.11:27949734:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000017.11:27949734:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000017.11:27949734:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000017.11:27949734:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:27949734:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:27949734:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:27949734:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:27949734:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINC01992 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000017.11:g.27949743_27949751del, NC_000017.11:g.27949750_27949751del, NC_000017.11:g.27949751del, NC_000017.11:g.27949751dup, NC_000017.11:g.27949750_27949751dup, NC_000017.11:g.27949749_27949751dup, NC_000017.11:g.27949744_27949751dup, NC_000017.11:g.27949743_27949751dup, NC_000017.11:g.27949742_27949751dup, NC_000017.11:g.27949751_27949752insTTTTTTTTTTTTTTTTTTTTT, NC_000017.11:g.27949751_27949752insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000017.10:g.26276769_26276777del, NC_000017.10:g.26276776_26276777del, NC_000017.10:g.26276777del, NC_000017.10:g.26276777dup, NC_000017.10:g.26276776_26276777dup, NC_000017.10:g.26276775_26276777dup, NC_000017.10:g.26276770_26276777dup, NC_000017.10:g.26276769_26276777dup, NC_000017.10:g.26276768_26276777dup, NC_000017.10:g.26276777_26276778insTTTTTTTTTTTTTTTTTTTTT, NC_000017.10:g.26276777_26276778insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Select item 14913230966.

rs1491323096 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GAG [Show Flanks]
Chromosome:: 17:27981079 (GRCh38)
17:26308106 (GRCh37)
Canonical SPDI:: NC_000017.11:27981079:AG:AGGAG
Gene:: LINC01992 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AGGAG=0./0 (ALFA)
HGVS:: NC_000017.11:g.27981081_27981082insGAG, NC_000017.10:g.26308107_26308108insGAG

Select item 14912975977.

rs1491297597 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 17:27976136 (GRCh38)
17:26303162 (GRCh37)
Canonical SPDI:: NC_000017.11:27976135:CA:
Gene:: LINC01992 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000017.11:g.27976136_27976137del, NC_000017.10:g.26303162_26303163del

Select item 14910703428.

rs1491070342 has merged into rs71359234 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATATATATATATATAT>-,ATATATAT,ATATATATATAT,ATATATATATATAT,ATATATATATATATATAT,ATATATATATATATATATAT,ATATATATATATATATATATAT,ATATATATATATATATATATATAT,ATATATATATATATATATATATATATAT [Show Flanks]
Chromosome:: 17:27979874 (GRCh38)
17:26306900 (GRCh37)
Canonical SPDI:: NC_000017.11:27979872:TATATATATATATATAT:T,NC_000017.11:27979872:TATATATATATATATAT:TATATATAT,NC_000017.11:27979872:TATATATATATATATAT:TATATATATATAT,NC_000017.11:27979872:TATATATATATATATAT:TATATATATATATAT,NC_000017.11:27979872:TATATATATATATATAT:TATATATATATATATATAT,NC_000017.11:27979872:TATATATATATATATAT:TATATATATATATATATATAT,NC_000017.11:27979872:TATATATATATATATAT:TATATATATATATATATATATAT,NC_000017.11:27979872:TATATATATATATATAT:TATATATATATATATATATATATAT,NC_000017.11:27979872:TATATATATATATATAT:TATATATATATATATATATATATATATAT
Gene:: LINC01992 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATATATATATAT=0./0 (ALFA)
HGVS:: NC_000017.11:g.27979874_27979889del, NC_000017.11:g.27979874AT[4], NC_000017.11:g.27979874AT[6], NC_000017.11:g.27979874AT[7], NC_000017.11:g.27979874AT[9], NC_000017.11:g.27979874AT[10], NC_000017.11:g.27979874AT[11], NC_000017.11:g.27979874AT[12], NC_000017.11:g.27979874AT[14], NC_000017.10:g.26306900_26306915del, NC_000017.10:g.26306900AT[4], NC_000017.10:g.26306900AT[6], NC_000017.10:g.26306900AT[7], NC_000017.10:g.26306900AT[9], NC_000017.10:g.26306900AT[10], NC_000017.10:g.26306900AT[11], NC_000017.10:g.26306900AT[12], NC_000017.10:g.26306900AT[14]

Select item 14909840899.

rs1490984089 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:27971822 (GRCh38)
17:26298848 (GRCh37)
Canonical SPDI:: NC_000017.11:27971821:T:C
Gene:: LINC01992 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000057/8 (GnomAD)
C=0.000132/35 (TOPMED)
C=0.000389/7 (TOMMO)
C=0.000625/4 (1000Genomes)
C=0.000685/2 (KOREAN)
C=0.001092/2 (Korea1K)
HGVS:: NC_000017.11:g.27971822T>C, NC_000017.10:g.26298848T>C

Select item 149090035810.

rs1490900358 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:27956893 (GRCh38)
17:26283919 (GRCh37)
Canonical SPDI:: NC_000017.11:27956892:T:C
Gene:: LINC01992 (Varview), LOC124903962 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.27956893T>C, NC_000017.10:g.26283919T>C

Select item 149089212411.

rs1490892124 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:27969408 (GRCh38)
17:26296434 (GRCh37)
Canonical SPDI:: NC_000017.11:27969407:C:T
Gene:: LINC01992 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000017.11:g.27969408C>T, NC_000017.10:g.26296434C>T

Select item 149086793812.

rs1490867938 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 17:27957897 (GRCh38)
17:26284923 (GRCh37)
Canonical SPDI:: NC_000017.11:27957896:C:G
Gene:: LINC01992 (Varview), LOC124903962 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.27957897C>G, NC_000017.10:g.26284923C>G

Select item 149086726213.

rs1490867262 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:27983504 (GRCh38)
17:26310530 (GRCh37)
Canonical SPDI:: NC_000017.11:27983503:T:C
Gene:: LINC01992 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.27983504T>C, NC_000017.10:g.26310530T>C

Select item 149084677514.

rs1490846775 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 17:27972730 (GRCh38)
17:26299756 (GRCh37)
Canonical SPDI:: NC_000017.11:27972729:C:A,NC_000017.11:27972729:C:T
Gene:: LINC01992 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000017.11:g.27972730C>A, NC_000017.11:g.27972730C>T, NC_000017.10:g.26299756C>A, NC_000017.10:g.26299756C>T

Select item 149079346015.

rs1490793460 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:27987111 (GRCh38)
17:26314137 (GRCh37)
Canonical SPDI:: NC_000017.11:27987110:T:C
Gene:: LINC01992 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.27987111T>C, NC_000017.10:g.26314137T>C, NG_067007.1:g.442T>C

Select item 149078952116.

rs1490789521 [Homo sapiens]

Variant type:: INS
Alleles:: ->CTCCA [Show Flanks]
Chromosome:: 17:27953876 (GRCh38)
17:26280903 (GRCh37)
Canonical SPDI:: NC_000017.11:27953876::CTCCA
Gene:: LINC01992 (Varview), LOC124903962 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: CTCCA=0.000021/3 (GnomAD)
HGVS:: NC_000017.11:g.27953876_27953877insCTCCA, NC_000017.10:g.26280902_26280903insCTCCA

Select item 149076919317.

rs1490769193 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:27956288 (GRCh38)
17:26283314 (GRCh37)
Canonical SPDI:: NC_000017.11:27956287:G:A
Gene:: LINC01992 (Varview), LOC124903962 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.27956288G>A, NC_000017.10:g.26283314G>A

Select item 149063064618.

rs1490630646 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:27971445 (GRCh38)
17:26298471 (GRCh37)
Canonical SPDI:: NC_000017.11:27971444:C:A
Gene:: LINC01992 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.0006/7 (ALFA)
A=0.01248/198 (TOMMO)
A=0.11745/342 (KOREAN)
HGVS:: NC_000017.11:g.27971445C>A, NC_000017.10:g.26298471C>A

Select item 149062773219.

rs1490627732 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:27986557 (GRCh38)
17:26313583 (GRCh37)
Canonical SPDI:: NC_000017.11:27986556:T:C
Gene:: LINC01992 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000017.11:g.27986557T>C, NC_000017.10:g.26313583T>C

Select item 149054570120.

rs1490545701 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 17:27935468 (GRCh38)
17:26262494 (GRCh37)
Canonical SPDI:: NC_000017.11:27935467:G:T
Gene:: LINC01992 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000017.11:g.27935468G>T, NC_000017.10:g.26262494G>T

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