SNP Links for Gene (Select 105372566) - SNP

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Select item 14912352321.

rs1491235232 [Homo sapiens]

Variant type:: INS
Alleles:: ->A,AC [Show Flanks]
Chromosome:: 20:22675757 (GRCh38)
20:22656396 (GRCh37)
Canonical SPDI:: NC_000020.11:22675757::A,NC_000020.11:22675757::AC
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: AC=0./0 (ALFA)
AC=0.000008/1 (GnomAD)
HGVS:: NC_000020.11:g.22675757_22675758insA, NC_000020.11:g.22675757_22675758insAC, NC_000020.10:g.22656395_22656396insA, NC_000020.10:g.22656395_22656396insAC

Select item 14911883082.

rs1491188308 [Homo sapiens]

Variant type:: DELINS
Alleles:: GG>- [Show Flanks]
Chromosome:: 20:22675758 (GRCh38)
20:22656396 (GRCh37)
Canonical SPDI:: NC_000020.11:22675756:GGG:G
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: -=0.0017/7 (Estonian)
HGVS:: NC_000020.11:g.22675758_22675759del, NC_000020.10:g.22656396_22656397del

Select item 14911601303.

rs1491160130 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 20:22672871 (GRCh38)
20:22653509 (GRCh37)
Canonical SPDI:: NC_000020.11:22672869:TGT:T
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000235/30 (GnomAD)
HGVS:: NC_000020.11:g.22672871_22672872del, NC_000020.10:g.22653509_22653510del

Select item 14906539774.

rs1490653977 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 20:22676243 (GRCh38)
20:22656881 (GRCh37)
Canonical SPDI:: NC_000020.11:22676242:G:A,NC_000020.11:22676242:G:T
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.22676243G>A, NC_000020.11:g.22676243G>T, NC_000020.10:g.22656881G>A, NC_000020.10:g.22656881G>T

Select item 14906029895.

rs1490602989 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:22675679 (GRCh38)
20:22656317 (GRCh37)
Canonical SPDI:: NC_000020.11:22675678:T:C
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000020.11:g.22675679T>C, NC_000020.10:g.22656317T>C

Select item 14904340436.

rs1490434043 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAATA>- [Show Flanks]
Chromosome:: 20:22675004 (GRCh38)
20:22655642 (GRCh37)
Canonical SPDI:: NC_000020.11:22675002:AAAAAAAAAAAATA:A
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
-=0.000022/3 (GnomAD)
HGVS:: NC_000020.11:g.22675004_22675016del, NC_000020.10:g.22655642_22655654del

Select item 14904250087.

rs1490425008 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:22682481 (GRCh38)
20:22663119 (GRCh37)
Canonical SPDI:: NC_000020.11:22682480:A:G
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.22682481A>G, NC_000020.10:g.22663119A>G

Select item 14903698358.

rs1490369835 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:22669520 (GRCh38)
20:22650158 (GRCh37)
Canonical SPDI:: NC_000020.11:22669519:C:T
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.22669520C>T, NC_000020.10:g.22650158C>T, NR_146527.1:n.390G>A

Select item 14903153589.

rs1490315358 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 20:22668517 (GRCh38)
20:22649155 (GRCh37)
Canonical SPDI:: NC_000020.11:22668516:C:A,NC_000020.11:22668516:C:G
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.22668517C>A, NC_000020.11:g.22668517C>G, NC_000020.10:g.22649155C>A, NC_000020.10:g.22649155C>G, NR_146527.1:n.1393G>T, NR_146527.1:n.1393G>C

Select item 148996422410.

rs1489964224 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 20:22682860 (GRCh38)
20:22663498 (GRCh37)
Canonical SPDI:: NC_000020.11:22682859:C:G
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.22682860C>G, NC_000020.10:g.22663498C>G

Select item 148994338511.

rs1489943385 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:22674384 (GRCh38)
20:22655022 (GRCh37)
Canonical SPDI:: NC_000020.11:22674383:T:C
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.22674384T>C, NC_000020.10:g.22655022T>C

Select item 148993424912.

rs1489934249 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 20:22681921 (GRCh38)
20:22662559 (GRCh37)
Canonical SPDI:: NC_000020.11:22681920:G:
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.22681921del, NC_000020.10:g.22662559del

Select item 148987839913.

rs1489878399 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:22680899 (GRCh38)
20:22661537 (GRCh37)
Canonical SPDI:: NC_000020.11:22680898:C:T
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.22680899C>T, NC_000020.10:g.22661537C>T

Select item 148982442414.

rs1489824424 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:22668067 (GRCh38)
20:22648705 (GRCh37)
Canonical SPDI:: NC_000020.11:22668066:T:C
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.22668067T>C, NC_000020.10:g.22648705T>C, NR_146527.1:n.1843A>G

Select item 148956405715.

rs1489564057 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:22670909 (GRCh38)
20:22651547 (GRCh37)
Canonical SPDI:: NC_000020.11:22670908:T:C
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.22670909T>C, NC_000020.10:g.22651547T>C

Select item 148943689816.

rs1489436898 has merged into rs923239520 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAAAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 20:22674992 (GRCh38)
20:22655630 (GRCh37)
Canonical SPDI:: NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000020.11:22674980:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC01747 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000020.11:g.22674992_22675014del, NC_000020.11:g.22674993_22675014del, NC_000020.11:g.22674994_22675014del, NC_000020.11:g.22674995_22675014del, NC_000020.11:g.22674996_22675014del, NC_000020.11:g.22674997_22675014del, NC_000020.11:g.22674998_22675014del, NC_000020.11:g.22674999_22675014del, NC_000020.11:g.22675000_22675014del, NC_000020.11:g.22675001_22675014del, NC_000020.11:g.22675002_22675014del, NC_000020.11:g.22675003_22675014del, NC_000020.11:g.22675004_22675014del, NC_000020.11:g.22675005_22675014del, NC_000020.11:g.22675006_22675014del, NC_000020.11:g.22675007_22675014del, NC_000020.11:g.22675008_22675014del, NC_000020.11:g.22675009_22675014del, NC_000020.11:g.22675010_22675014del, NC_000020.11:g.22675011_22675014del, NC_000020.11:g.22675012_22675014del, NC_000020.11:g.22675013_22675014del, NC_000020.11:g.22675014del, NC_000020.11:g.22675014dup, NC_000020.11:g.22675013_22675014dup, NC_000020.11:g.22675012_22675014dup, NC_000020.11:g.22675011_22675014dup, NC_000020.11:g.22675010_22675014dup, NC_000020.11:g.22675009_22675014dup, NC_000020.11:g.22675008_22675014dup, NC_000020.11:g.22675006_22675014dup, NC_000020.10:g.22655630_22655652del, NC_000020.10:g.22655631_22655652del, NC_000020.10:g.22655632_22655652del, NC_000020.10:g.22655633_22655652del, NC_000020.10:g.22655634_22655652del, NC_000020.10:g.22655635_22655652del, NC_000020.10:g.22655636_22655652del, NC_000020.10:g.22655637_22655652del, NC_000020.10:g.22655638_22655652del, NC_000020.10:g.22655639_22655652del, NC_000020.10:g.22655640_22655652del, NC_000020.10:g.22655641_22655652del, NC_000020.10:g.22655642_22655652del, NC_000020.10:g.22655643_22655652del, NC_000020.10:g.22655644_22655652del, NC_000020.10:g.22655645_22655652del, NC_000020.10:g.22655646_22655652del, NC_000020.10:g.22655647_22655652del, NC_000020.10:g.22655648_22655652del, NC_000020.10:g.22655649_22655652del, NC_000020.10:g.22655650_22655652del, NC_000020.10:g.22655651_22655652del, NC_000020.10:g.22655652del, NC_000020.10:g.22655652dup, NC_000020.10:g.22655651_22655652dup, NC_000020.10:g.22655650_22655652dup, NC_000020.10:g.22655649_22655652dup, NC_000020.10:g.22655648_22655652dup, NC_000020.10:g.22655647_22655652dup, NC_000020.10:g.22655646_22655652dup, NC_000020.10:g.22655644_22655652dup

Select item 148939225617.

rs1489392256 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 20:22680798 (GRCh38)
20:22661436 (GRCh37)
Canonical SPDI:: NC_000020.11:22680797:C:G
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000020.11:g.22680798C>G, NC_000020.10:g.22661436C>G

Select item 148906128518.

rs1489061285 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:22686990 (GRCh38)
20:22667628 (GRCh37)
Canonical SPDI:: NC_000020.11:22686989:T:C
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000020.11:g.22686990T>C, NC_000020.10:g.22667628T>C

Select item 148903760319.

rs1489037603 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 20:22674966 (GRCh38)
20:22655604 (GRCh37)
Canonical SPDI:: NC_000020.11:22674965:G:C
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000020.11:g.22674966G>C, NC_000020.10:g.22655604G>C

Select item 148897954420.

rs1488979544 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 20:22680494 (GRCh38)
20:22661133 (GRCh37)
Canonical SPDI:: NC_000020.11:22680494:AAAAAA:AAAAAAA
Gene:: LINC01747 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: AAAAAAA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.22680500dup, NC_000020.10:g.22661138dup

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