SNP Links for Gene (Select 105373998) - SNP

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Select item 14911615451.

rs1491161545 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 3:98188303 (GRCh38)
3:97907147 (GRCh37)
Canonical SPDI:: NC_000003.12:98188302:CA:
Gene:: LOC105373998 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00004/1 (GnomAD)
HGVS:: NC_000003.12:g.98188303_98188304del, NC_000003.11:g.97907147_97907148del

Select item 14908700612.

rs1490870061 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:98186210 (GRCh38)
3:97905054 (GRCh37)
Canonical SPDI:: NC_000003.12:98186209:G:A
Gene:: LOC105373998 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.98186210G>A, NC_000003.11:g.97905054G>A

Select item 14908589453.

rs1490858945 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:98187633 (GRCh38)
3:97906477 (GRCh37)
Canonical SPDI:: NC_000003.12:98187632:A:G
Gene:: LOC105373998 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.98187633A>G, NC_000003.11:g.97906477A>G

Select item 14903961504.

rs1490396150 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:98185900 (GRCh38)
3:97904744 (GRCh37)
Canonical SPDI:: NC_000003.12:98185899:C:T
Gene:: LOC105373998 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.98185900C>T, NC_000003.11:g.97904744C>T

Select item 14900909665.

rs1490090966 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:98189873 (GRCh38)
3:97908717 (GRCh37)
Canonical SPDI:: NC_000003.12:98189872:T:G
Gene:: LOC105373997 (Varview), LOC105373998 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.98189873T>G, NC_000003.11:g.97908717T>G

Select item 14898924896.

rs1489892489 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 3:98188854 (GRCh38)
3:97907698 (GRCh37)
Canonical SPDI:: NC_000003.12:98188853:G:A,NC_000003.12:98188853:G:C
Gene:: LOC105373998 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.98188854G>A, NC_000003.12:g.98188854G>C, NC_000003.11:g.97907698G>A, NC_000003.11:g.97907698G>C, XR_924256.2:n.5C>T, XR_924256.2:n.5C>G, XR_924256.1:n.5C>T, XR_924256.1:n.5C>G

Select item 14886872867.

rs1488687286 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 3:98187936 (GRCh38)
3:97906780 (GRCh37)
Canonical SPDI:: NC_000003.12:98187935:C:A
Gene:: LOC105373998 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.98187936C>A, NC_000003.11:g.97906780C>A

Select item 14885346678.

rs1488534667 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 3:98190619 (GRCh38)
3:97909463 (GRCh37)
Canonical SPDI:: NC_000003.12:98190618:G:C,NC_000003.12:98190618:G:T
Gene:: LOC105373997 (Varview), LOC105373998 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000003.12:g.98190619G>C, NC_000003.12:g.98190619G>T, NC_000003.11:g.97909463G>C, NC_000003.11:g.97909463G>T

Select item 14878732639.

rs1487873263 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:98189907 (GRCh38)
3:97908751 (GRCh37)
Canonical SPDI:: NC_000003.12:98189906:C:T
Gene:: LOC105373997 (Varview), LOC105373998 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.98189907C>T, NC_000003.11:g.97908751C>T

Select item 148777970910.

rs1487779709 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 3:98190183 (GRCh38)
3:97909027 (GRCh37)
Canonical SPDI:: NC_000003.12:98190182:C:A
Gene:: LOC105373997 (Varview), LOC105373998 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0./0 (GnomAD)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.98190183C>A, NC_000003.11:g.97909027C>A

Select item 148710831611.

rs1487108316 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 3:98184569 (GRCh38)
3:97903413 (GRCh37)
Canonical SPDI:: NC_000003.12:98184568:C:A,NC_000003.12:98184568:C:T
Gene:: LOC105373998 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.98184569C>A, NC_000003.12:g.98184569C>T, NC_000003.11:g.97903413C>A, NC_000003.11:g.97903413C>T

Select item 148704629212.

rs1487046292 [Homo sapiens]

Variant type:: DEL
Alleles:: AC>- [Show Flanks]
Chromosome:: 3:98188463 (GRCh38)
3:97907307 (GRCh37)
Canonical SPDI:: NC_000003.12:98188462:AC:
Gene:: LOC105373998 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.000156/1 (1000Genomes)
-=0.000186/26 (GnomAD)
HGVS:: NC_000003.12:g.98188463_98188464del, NC_000003.11:g.97907307_97907308del

Select item 148701965313.

rs1487019653 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:98186971 (GRCh38)
3:97905815 (GRCh37)
Canonical SPDI:: NC_000003.12:98186970:A:G
Gene:: LOC105373998 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000021/3 (GnomAD)
G=0.00003/8 (TOPMED)
HGVS:: NC_000003.12:g.98186971A>G, NC_000003.11:g.97905815A>G

Select item 148651438714.

rs1486514387 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 3:98186281 (GRCh38)
3:97905125 (GRCh37)
Canonical SPDI:: NC_000003.12:98186280:A:C
Gene:: LOC105373998 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.98186281A>C, NC_000003.11:g.97905125A>C

Select item 148644495115.

rs1486444951 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 3:98186991 (GRCh38)
3:97905835 (GRCh37)
Canonical SPDI:: NC_000003.12:98186990:C:A
Gene:: LOC105373998 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000156/1 (1000Genomes)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000003.12:g.98186991C>A, NC_000003.11:g.97905835C>A

Select item 148623876516.

rs1486238765 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 3:98189535 (GRCh38)
3:97908379 (GRCh37)
Canonical SPDI:: NC_000003.12:98189534:G:C,NC_000003.12:98189534:G:T
Gene:: LOC105373997 (Varview), LOC105373998 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.98189535G>C, NC_000003.12:g.98189535G>T, NC_000003.11:g.97908379G>C, NC_000003.11:g.97908379G>T

Select item 148591505417.

rs1485915054 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTCT>- [Show Flanks]
Chromosome:: 3:98189088 (GRCh38)
3:97907932 (GRCh37)
Canonical SPDI:: NC_000003.12:98189083:TTCTTTCT:TTCT
Gene:: LOC105373998 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: TTCTTTCT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.98189084TTCT[1], NC_000003.11:g.97907928TTCT[1]

Select item 148565861618.

rs1485658616 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 3:98188299 (GRCh38)
3:97907143 (GRCh37)
Canonical SPDI:: NC_000003.12:98188298:TTT:TT
Gene:: LOC105373998 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
HGVS:: NC_000003.12:g.98188301del, NC_000003.11:g.97907145del

Select item 148540250719.

rs1485402507 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 3:98187516 (GRCh38)
3:97906361 (GRCh37)
Canonical SPDI:: NC_000003.12:98187516:C:CC
Gene:: LOC105373998 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.98187517dup, NC_000003.11:g.97906361dup

Select item 148526151820.

rs1485261518 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:98188370 (GRCh38)
3:97907214 (GRCh37)
Canonical SPDI:: NC_000003.12:98188369:G:A
Gene:: LOC105373998 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.98188370G>A, NC_000003.11:g.97907214G>A

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