SNP Links for Gene (Select 105374698) - SNP

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Select item 14909103751.

rs1490910375 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 5:28285911 (GRCh38)
5:28286018 (GRCh37)
Canonical SPDI:: NC_000005.10:28285910:A:
Gene:: LINC02103 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.28285911del, NC_000005.9:g.28286018del

Select item 14895046802.

rs1489504680 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 5:28286803 (GRCh38)
5:28286910 (GRCh37)
Canonical SPDI:: NC_000005.10:28286802:G:A,NC_000005.10:28286802:G:T
Gene:: LINC02103 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.28286803G>A, NC_000005.10:g.28286803G>T, NC_000005.9:g.28286910G>A, NC_000005.9:g.28286910G>T, NR_134265.1:n.109C>T, NR_134265.1:n.109C>A

Select item 14892992743.

rs1489299274 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 5:28287374 (GRCh38)
5:28287481 (GRCh37)
Canonical SPDI:: NC_000005.10:28287373:T:C,NC_000005.10:28287373:T:G
Gene:: LINC02103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00005/1 (ALFA)
C=0.00022/1 (Estonian)
HGVS:: NC_000005.10:g.28287374T>C, NC_000005.10:g.28287374T>G, NC_000005.9:g.28287481T>C, NC_000005.9:g.28287481T>G

Select item 14879602964.

rs1487960296 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:28289439 (GRCh38)
5:28289546 (GRCh37)
Canonical SPDI:: NC_000005.10:28289438:G:A
Gene:: LINC02103 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.28289439G>A, NC_000005.9:g.28289546G>A

Select item 14879085775.

rs1487908577 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 5:28286922 (GRCh38)
5:28287029 (GRCh37)
Canonical SPDI:: NC_000005.10:28286921:A:
Gene:: LINC02103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.28286922del, NC_000005.9:g.28287029del

Select item 14862170336.

rs1486217033 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:28285919 (GRCh38)
5:28286026 (GRCh37)
Canonical SPDI:: NC_000005.10:28285918:C:T
Gene:: LINC02103 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000005.10:g.28285919C>T, NC_000005.9:g.28286026C>T

Select item 14861939277.

rs1486193927 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 5:28287164 (GRCh38)
5:28287271 (GRCh37)
Canonical SPDI:: NC_000005.10:28287163:G:A,NC_000005.10:28287163:G:T
Gene:: LINC02103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.28287164G>A, NC_000005.10:g.28287164G>T, NC_000005.9:g.28287271G>A, NC_000005.9:g.28287271G>T

Select item 14861011128.

rs1486101112 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 5:28288345 (GRCh38)
5:28288452 (GRCh37)
Canonical SPDI:: NC_000005.10:28288344:G:A,NC_000005.10:28288344:G:C,NC_000005.10:28288344:G:T
Gene:: LINC02103 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.28288345G>A, NC_000005.10:g.28288345G>C, NC_000005.10:g.28288345G>T, NC_000005.9:g.28288452G>A, NC_000005.9:g.28288452G>C, NC_000005.9:g.28288452G>T

Select item 14853789059.

rs1485378905 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 5:28288467 (GRCh38)
5:28288574 (GRCh37)
Canonical SPDI:: NC_000005.10:28288466:G:C
Gene:: LINC02103 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.28288467G>C, NC_000005.9:g.28288574G>C

Select item 148531801710.

rs1485318017 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 5:28288814 (GRCh38)
5:28288921 (GRCh37)
Canonical SPDI:: NC_000005.10:28288813:A:C,NC_000005.10:28288813:A:T
Gene:: LINC02103 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000005.10:g.28288814A>C, NC_000005.10:g.28288814A>T, NC_000005.9:g.28288921A>C, NC_000005.9:g.28288921A>T

Select item 148415904011.

rs1484159040 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:28286594 (GRCh38)
5:28286701 (GRCh37)
Canonical SPDI:: NC_000005.10:28286593:C:T
Gene:: LINC02103 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000005.10:g.28286594C>T, NC_000005.9:g.28286701C>T, NR_134265.1:n.318G>A

Select item 148410819812.

rs1484108198 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 5:28287435 (GRCh38)
5:28287542 (GRCh37)
Canonical SPDI:: NC_000005.10:28287434:G:C,NC_000005.10:28287434:G:T
Gene:: LINC02103 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000026/7 (TOPMED)
HGVS:: NC_000005.10:g.28287435G>C, NC_000005.10:g.28287435G>T, NC_000005.9:g.28287542G>C, NC_000005.9:g.28287542G>T

Select item 148221037313.

rs1482210373 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 5:28286790 (GRCh38)
5:28286897 (GRCh37)
Canonical SPDI:: NC_000005.10:28286789:A:T
Gene:: LINC02103 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000005.10:g.28286790A>T, NC_000005.9:g.28286897A>T, NR_134265.1:n.122T>A

Select item 148081752514.

rs1480817525 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:28286712 (GRCh38)
5:28286819 (GRCh37)
Canonical SPDI:: NC_000005.10:28286711:C:T
Gene:: LINC02103 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.28286712C>T, NC_000005.9:g.28286819C>T, NR_134265.1:n.200G>A

Select item 147996680115.

rs1479966801 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:28288571 (GRCh38)
5:28288678 (GRCh37)
Canonical SPDI:: NC_000005.10:28288570:C:T
Gene:: LINC02103 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000005.10:g.28288571C>T, NC_000005.9:g.28288678C>T

Select item 147932050516.

rs1479320505 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 5:28286015 (GRCh38)
5:28286122 (GRCh37)
Canonical SPDI:: NC_000005.10:28286014:G:A,NC_000005.10:28286014:G:T
Gene:: LINC02103 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000005.10:g.28286015G>A, NC_000005.10:g.28286015G>T, NC_000005.9:g.28286122G>A, NC_000005.9:g.28286122G>T

Select item 147907409517.

rs1479074095 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:28285890 (GRCh38)
5:28285997 (GRCh37)
Canonical SPDI:: NC_000005.10:28285889:A:G
Gene:: LINC02103 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.28285890A>G, NC_000005.9:g.28285997A>G

Select item 147897128118.

rs1478971281 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 5:28287965 (GRCh38)
5:28288072 (GRCh37)
Canonical SPDI:: NC_000005.10:28287964:G:C
Gene:: LINC02103 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.28287965G>C, NC_000005.9:g.28288072G>C

Select item 147725664519.

rs1477256645 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:28288227 (GRCh38)
5:28288334 (GRCh37)
Canonical SPDI:: NC_000005.10:28288226:C:T
Gene:: LINC02103 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000005.10:g.28288227C>T, NC_000005.9:g.28288334C>T

Select item 147720601820.

rs1477206018 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 5:28285954 (GRCh38)
5:28286061 (GRCh37)
Canonical SPDI:: NC_000005.10:28285953:GG:G
Gene:: LINC02103 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: GG=0.000071/1 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.28285955del, NC_000005.9:g.28286062del

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