SNP Links for Gene (Select 105375825) - SNP

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Select item 14915538051.

rs1491553805 has merged into rs140642017 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACACACACA>-,CA,CACA,CACACA,CACACACA,CACACACACA,CACACACACACA,CACACACACACACACA,CACACACACACACACACA,CACACACACACACACACACA,CACACACACACACACACACACA,CACACACACACACACACACACACA,CACACACACACACACACACACACACA,CACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACA [Show Flanks]
Chromosome:: 8:48813011 (GRCh38)
8:49725570 (GRCh37)
Canonical SPDI:: NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACA,NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACACA,NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACACACA,NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACACACACA,NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACA,NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACA,NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACA,NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACA,NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACA,NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACA,NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACA,NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACA,NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACA,NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACA,NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACA,NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000008.11:48812993:ACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACA
Gene:: LOC105375825 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACACACACA=0./0 (ALFA)
HGVS:: NC_000008.11:g.48812995CA[8], NC_000008.11:g.48812995CA[9], NC_000008.11:g.48812995CA[10], NC_000008.11:g.48812995CA[11], NC_000008.11:g.48812995CA[12], NC_000008.11:g.48812995CA[13], NC_000008.11:g.48812995CA[14], NC_000008.11:g.48812995CA[16], NC_000008.11:g.48812995CA[17], NC_000008.11:g.48812995CA[18], NC_000008.11:g.48812995CA[19], NC_000008.11:g.48812995CA[20], NC_000008.11:g.48812995CA[21], NC_000008.11:g.48812995CA[22], NC_000008.11:g.48812995CA[23], NC_000008.11:g.48812995CA[24], NC_000008.11:g.48812995CA[25], NC_000008.10:g.49725554CA[8], NC_000008.10:g.49725554CA[9], NC_000008.10:g.49725554CA[10], NC_000008.10:g.49725554CA[11], NC_000008.10:g.49725554CA[12], NC_000008.10:g.49725554CA[13], NC_000008.10:g.49725554CA[14], NC_000008.10:g.49725554CA[16], NC_000008.10:g.49725554CA[17], NC_000008.10:g.49725554CA[18], NC_000008.10:g.49725554CA[19], NC_000008.10:g.49725554CA[20], NC_000008.10:g.49725554CA[21], NC_000008.10:g.49725554CA[22], NC_000008.10:g.49725554CA[23], NC_000008.10:g.49725554CA[24], NC_000008.10:g.49725554CA[25]

Select item 14913866852.

rs1491386685 has merged into rs34669810 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 8:48810125 (GRCh38)
8:49722684 (GRCh37)
Canonical SPDI:: NC_000008.11:48810112:AAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000008.11:48810112:AAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000008.11:48810112:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000008.11:48810112:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000008.11:48810112:AAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LOC105375825 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000008.11:g.48810125_48810126del, NC_000008.11:g.48810126del, NC_000008.11:g.48810126dup, NC_000008.11:g.48810125_48810126dup, NC_000008.11:g.48810126_48810127insAAAAAAAAAAAAAAA, NC_000008.10:g.49722684_49722685del, NC_000008.10:g.49722685del, NC_000008.10:g.49722685dup, NC_000008.10:g.49722684_49722685dup, NC_000008.10:g.49722685_49722686insAAAAAAAAAAAAAAA

Select item 14913717543.

rs1491371754 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 8:48796804 (GRCh38)
8:49709363 (GRCh37)
Canonical SPDI:: NC_000008.11:48796798:TTTTTTT:TTTTT
Gene:: LOC105375825 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000008.11:g.48796804_48796805del, NC_000008.10:g.49709363_49709364del

Select item 14913062944.

rs1491306294 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 8:48796799 (GRCh38)
8:49709359 (GRCh37)
Canonical SPDI:: NC_000008.11:48796799::C
Gene:: LOC105375825 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000043/6 (GnomAD)
HGVS:: NC_000008.11:g.48796799_48796800insC, NC_000008.10:g.49709358_49709359insC

Select item 14910038785.

rs1491003878 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 8:48827298 (GRCh38)
8:49739857 (GRCh37)
Canonical SPDI:: NC_000008.11:48827297:A:G
Gene:: LOC105375825 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000295/78 (TOPMED)
G=0.000335/47 (GnomAD)
HGVS:: NC_000008.11:g.48827298A>G, NC_000008.10:g.49739857A>G, XR_928859.3:n.6423A>G, XR_928859.2:n.6423A>G, XR_928859.1:n.6419A>G, XR_001745894.2:n.6496A>G, XR_001745894.1:n.6496A>G

Select item 14909569986.

rs1490956998 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 8:48779214 (GRCh38)
8:49691773 (GRCh37)
Canonical SPDI:: NC_000008.11:48779213:T:C
Gene:: LOC105375825 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000008.11:g.48779214T>C, NC_000008.10:g.49691773T>C

Select item 14908417847.

rs1490841784 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 8:48794290 (GRCh38)
8:49706849 (GRCh37)
Canonical SPDI:: NC_000008.11:48794289:T:A
Gene:: LOC105375825 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000008.11:g.48794290T>A, NC_000008.10:g.49706849T>A

Select item 14907600758.

rs1490760075 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 8:48817660 (GRCh38)
8:49730219 (GRCh37)
Canonical SPDI:: NC_000008.11:48817659:G:
Gene:: LOC105375825 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: -=0.000015/2 (GnomAD)
HGVS:: NC_000008.11:g.48817660del, NC_000008.10:g.49730219del

Select item 14906156919.

rs1490615691 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 8:48799910 (GRCh38)
8:49712469 (GRCh37)
Canonical SPDI:: NC_000008.11:48799909:G:A,NC_000008.11:48799909:G:T
Gene:: LOC105375825 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00007/1 (TOMMO)
T=0.00016/1 (1000Genomes)
T=0.00068/2 (KOREAN)
HGVS:: NC_000008.11:g.48799910G>A, NC_000008.11:g.48799910G>T, NC_000008.10:g.49712469G>A, NC_000008.10:g.49712469G>T

Select item 149053682810.

rs1490536828 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TTT [Show Flanks]
Chromosome:: 8:48785616 (GRCh38)
8:49698176 (GRCh37)
Canonical SPDI:: NC_000008.11:48785616:TTT:TTTTTT
Gene:: LOC105375825 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TTTTTT=0.000071/1 (ALFA)
TTT=0.000004/1 (TOPMED)
HGVS:: NC_000008.11:g.48785617_48785619dup, NC_000008.10:g.49698176_49698178dup

Select item 149051337111.

rs1490513371 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 8:48826817 (GRCh38)
8:49739376 (GRCh37)
Canonical SPDI:: NC_000008.11:48826816:T:A
Gene:: LOC105375825 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000008.11:g.48826817T>A, NC_000008.10:g.49739376T>A, XR_928859.3:n.5942T>A, XR_928859.2:n.5942T>A, XR_928859.1:n.5938T>A, XR_001745894.2:n.6015T>A, XR_001745894.1:n.6015T>A

Select item 149046666612.

rs1490466666 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 8:48778681 (GRCh38)
8:49691240 (GRCh37)
Canonical SPDI:: NC_000008.11:48778680:C:T
Gene:: LOC105375825 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000057/8 (GnomAD)
HGVS:: NC_000008.11:g.48778681C>T, NC_000008.10:g.49691240C>T

Select item 149042175013.

rs1490421750 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 8:48786535 (GRCh38)
8:49699094 (GRCh37)
Canonical SPDI:: NC_000008.11:48786534:A:G
Gene:: LOC105375825 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000008.11:g.48786535A>G, NC_000008.10:g.49699094A>G

Select item 149036059614.

rs1490360596 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 8:48789088 (GRCh38)
8:49701647 (GRCh37)
Canonical SPDI:: NC_000008.11:48789087:A:T
Gene:: LOC105375825 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000008.11:g.48789088A>T, NC_000008.10:g.49701647A>T

Select item 149035205015.

rs1490352050 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 8:48793999 (GRCh38)
8:49706558 (GRCh37)
Canonical SPDI:: NC_000008.11:48793998:G:A
Gene:: LOC105375825 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000008.11:g.48793999G>A, NC_000008.10:g.49706558G>A

Select item 149034372216.

rs1490343722 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 8:48786216 (GRCh38)
8:49698775 (GRCh37)
Canonical SPDI:: NC_000008.11:48786215:A:G
Gene:: LOC105375825 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000008.11:g.48786216A>G, NC_000008.10:g.49698775A>G

Select item 149029800817.

rs1490298008 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 8:48798544 (GRCh38)
8:49711103 (GRCh37)
Canonical SPDI:: NC_000008.11:48798543:AA:A
Gene:: LOC105375825 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000008.11:g.48798545del, NC_000008.10:g.49711104del

Select item 149028583018.

rs1490285830 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 8:48811089 (GRCh38)
8:49723648 (GRCh37)
Canonical SPDI:: NC_000008.11:48811088:A:T
Gene:: LOC105375825 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000008.11:g.48811089A>T, NC_000008.10:g.49723648A>T

Select item 149025937319.

rs1490259373 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 8:48812183 (GRCh38)
8:49724742 (GRCh37)
Canonical SPDI:: NC_000008.11:48812182:C:T
Gene:: LOC105375825 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000008.11:g.48812183C>T, NC_000008.10:g.49724742C>T

Select item 149023708520.

rs1490237085 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 8:48825949 (GRCh38)
8:49738508 (GRCh37)
Canonical SPDI:: NC_000008.11:48825948:A:G
Gene:: LOC105375825 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000008.11:g.48825949A>G, NC_000008.10:g.49738508A>G, XR_928859.3:n.5074A>G, XR_928859.2:n.5074A>G, XR_928859.1:n.5070A>G, XR_001745894.2:n.5147A>G, XR_001745894.1:n.5147A>G

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