SNP Links for Gene (Select 105378828) - SNP

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Select item 14915765531.

rs1491576553 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T,TT,TTT,TTTT [Show Flanks]
Chromosome:: 1:86679078 (GRCh38)
1:87144762 (GRCh37)
Canonical SPDI:: NC_000001.11:86679078:T:TT,NC_000001.11:86679078:T:TTT,NC_000001.11:86679078:T:TTTT,NC_000001.11:86679078:T:TTTTT
Gene:: CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTT=0./0 (ALFA)
TTT=0.00099/4 (Estonian)
HGVS:: NC_000001.11:g.86679079dup, NC_000001.11:g.86679079_86679080insTT, NC_000001.11:g.86679079_86679080insTTT, NC_000001.11:g.86679079_86679080insTTTT, NC_000001.10:g.87144762dup, NC_000001.10:g.87144762_87144763insTT, NC_000001.10:g.87144762_87144763insTTT, NC_000001.10:g.87144762_87144763insTTTT

Select item 14915696602.

rs1491569660 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 1:86616567 (GRCh38)
1:87082250 (GRCh37)
Canonical SPDI:: NC_000001.11:86616566:TA:
Gene:: CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00003/3 (GnomAD)
HGVS:: NC_000001.11:g.86616567_86616568del, NC_000001.10:g.87082250_87082251del

Select item 14915403373.

rs1491540337 has merged into rs59558407 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAAAAAAA>-,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 1:86678137 (GRCh38)
1:87143820 (GRCh37)
Canonical SPDI:: NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86678126:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: CLCA4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
AAAAAAAAAAAAAAAAAAA=0.025/1 (GENOME_DK)
HGVS:: NC_000001.11:g.86678137_86678155del, NC_000001.11:g.86678139_86678155del, NC_000001.11:g.86678140_86678155del, NC_000001.11:g.86678141_86678155del, NC_000001.11:g.86678142_86678155del, NC_000001.11:g.86678143_86678155del, NC_000001.11:g.86678144_86678155del, NC_000001.11:g.86678145_86678155del, NC_000001.11:g.86678146_86678155del, NC_000001.11:g.86678147_86678155del, NC_000001.11:g.86678148_86678155del, NC_000001.11:g.86678149_86678155del, NC_000001.11:g.86678150_86678155del, NC_000001.11:g.86678151_86678155del, NC_000001.11:g.86678152_86678155del, NC_000001.11:g.86678153_86678155del, NC_000001.11:g.86678154_86678155del, NC_000001.11:g.86678155del, NC_000001.11:g.86678155dup, NC_000001.11:g.86678154_86678155dup, NC_000001.11:g.86678153_86678155dup, NC_000001.11:g.86678152_86678155dup, NC_000001.11:g.86678151_86678155dup, NC_000001.11:g.86678150_86678155dup, NC_000001.11:g.86678149_86678155dup, NC_000001.11:g.86678148_86678155dup, NC_000001.11:g.86678147_86678155dup, NC_000001.11:g.86678146_86678155dup, NC_000001.11:g.86678145_86678155dup, NC_000001.11:g.86678144_86678155dup, NC_000001.11:g.86678143_86678155dup, NC_000001.11:g.86678142_86678155dup, NC_000001.11:g.86678141_86678155dup, NC_000001.11:g.86678140_86678155dup, NC_000001.11:g.86678139_86678155dup, NC_000001.11:g.86678138_86678155dup, NC_000001.11:g.86678137_86678155dup, NC_000001.11:g.86678136_86678155dup, NC_000001.11:g.86678133_86678155dup, NC_000001.11:g.86678132_86678155dup, NC_000001.11:g.86678131_86678155dup, NC_000001.11:g.86678155_86678156insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000001.10:g.87143820_87143838del, NC_000001.10:g.87143822_87143838del, NC_000001.10:g.87143823_87143838del, NC_000001.10:g.87143824_87143838del, NC_000001.10:g.87143825_87143838del, NC_000001.10:g.87143826_87143838del, NC_000001.10:g.87143827_87143838del, NC_000001.10:g.87143828_87143838del, NC_000001.10:g.87143829_87143838del, NC_000001.10:g.87143830_87143838del, NC_000001.10:g.87143831_87143838del, NC_000001.10:g.87143832_87143838del, NC_000001.10:g.87143833_87143838del, NC_000001.10:g.87143834_87143838del, NC_000001.10:g.87143835_87143838del, NC_000001.10:g.87143836_87143838del, NC_000001.10:g.87143837_87143838del, NC_000001.10:g.87143838del, NC_000001.10:g.87143838dup, NC_000001.10:g.87143837_87143838dup, NC_000001.10:g.87143836_87143838dup, NC_000001.10:g.87143835_87143838dup, NC_000001.10:g.87143834_87143838dup, NC_000001.10:g.87143833_87143838dup, NC_000001.10:g.87143832_87143838dup, NC_000001.10:g.87143831_87143838dup, NC_000001.10:g.87143830_87143838dup, NC_000001.10:g.87143829_87143838dup, NC_000001.10:g.87143828_87143838dup, NC_000001.10:g.87143827_87143838dup, NC_000001.10:g.87143826_87143838dup, NC_000001.10:g.87143825_87143838dup, NC_000001.10:g.87143824_87143838dup, NC_000001.10:g.87143823_87143838dup, NC_000001.10:g.87143822_87143838dup, NC_000001.10:g.87143821_87143838dup, NC_000001.10:g.87143820_87143838dup, NC_000001.10:g.87143819_87143838dup, NC_000001.10:g.87143816_87143838dup, NC_000001.10:g.87143815_87143838dup, NC_000001.10:g.87143814_87143838dup, NC_000001.10:g.87143838_87143839insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 14914825304.

rs1491482530 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CG [Show Flanks]
Chromosome:: 1:86636586 (GRCh38)
1:87102270 (GRCh37)
Canonical SPDI:: NC_000001.11:86636586:G:GCG
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCG=0./0 (ALFA)
GC=0.000004/1 (TOPMED)
GC=0.000031/1 (GnomAD)
HGVS:: NC_000001.11:g.86636587_86636588insCG, NC_000001.10:g.87102270_87102271insCG

Select item 14914487165.

rs1491448716 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 1:86678126 (GRCh38)
1:87143809 (GRCh37)
Canonical SPDI:: NC_000001.11:86678125:CA:
Gene:: CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00177/25 (TOMMO)
HGVS:: NC_000001.11:g.86678126_86678127del, NC_000001.10:g.87143809_87143810del

Select item 14913577166.

rs1491357716 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 1:86591296 (GRCh38)
1:87056979 (GRCh37)
Canonical SPDI:: NC_000001.11:86591295:CA:
Gene:: CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00717/85 (ALFA)
-=0.00376/62 (TOMMO)
HGVS:: NC_000001.11:g.86591296_86591297del, NC_000001.10:g.87056979_87056980del

Select item 14912997957.

rs1491299795 has merged into rs11286945 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAA>-,A,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 1:86591307 (GRCh38)
1:87056990 (GRCh37)
Canonical SPDI:: NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:86591296:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: CLCA4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
-=0.25/10 (GENOME_DK)
HGVS:: NC_000001.11:g.86591307_86591318del, NC_000001.11:g.86591308_86591318del, NC_000001.11:g.86591310_86591318del, NC_000001.11:g.86591311_86591318del, NC_000001.11:g.86591312_86591318del, NC_000001.11:g.86591313_86591318del, NC_000001.11:g.86591314_86591318del, NC_000001.11:g.86591315_86591318del, NC_000001.11:g.86591316_86591318del, NC_000001.11:g.86591317_86591318del, NC_000001.11:g.86591318del, NC_000001.11:g.86591318dup, NC_000001.11:g.86591317_86591318dup, NC_000001.11:g.86591316_86591318dup, NC_000001.11:g.86591315_86591318dup, NC_000001.11:g.86591314_86591318dup, NC_000001.11:g.86591312_86591318dup, NC_000001.11:g.86591309_86591318dup, NC_000001.11:g.86591318_86591319insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000001.10:g.87056990_87057001del, NC_000001.10:g.87056991_87057001del, NC_000001.10:g.87056993_87057001del, NC_000001.10:g.87056994_87057001del, NC_000001.10:g.87056995_87057001del, NC_000001.10:g.87056996_87057001del, NC_000001.10:g.87056997_87057001del, NC_000001.10:g.87056998_87057001del, NC_000001.10:g.87056999_87057001del, NC_000001.10:g.87057000_87057001del, NC_000001.10:g.87057001del, NC_000001.10:g.87057001dup, NC_000001.10:g.87057000_87057001dup, NC_000001.10:g.87056999_87057001dup, NC_000001.10:g.87056998_87057001dup, NC_000001.10:g.87056997_87057001dup, NC_000001.10:g.87056995_87057001dup, NC_000001.10:g.87056992_87057001dup, NC_000001.10:g.87057001_87057002insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 14911598348.

rs1491159834 has merged into rs55815701 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAA>-,AAA,AAAA,AAAAA,AAAAAA,AAAAAAAA,AAAAAAAAA [Show Flanks]
Chromosome:: 1:86616579 (GRCh38)
1:87082262 (GRCh37)
Canonical SPDI:: NC_000001.11:86616567:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000001.11:86616567:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000001.11:86616567:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000001.11:86616567:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000001.11:86616567:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000001.11:86616567:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000001.11:86616567:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA
Gene:: CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAA=0./0 (ALFA)
-=0.3271/1638 (1000Genomes)
HGVS:: NC_000001.11:g.86616579_86616585del, NC_000001.11:g.86616582_86616585del, NC_000001.11:g.86616583_86616585del, NC_000001.11:g.86616584_86616585del, NC_000001.11:g.86616585del, NC_000001.11:g.86616585dup, NC_000001.11:g.86616584_86616585dup, NC_000001.10:g.87082262_87082268del, NC_000001.10:g.87082265_87082268del, NC_000001.10:g.87082266_87082268del, NC_000001.10:g.87082267_87082268del, NC_000001.10:g.87082268del, NC_000001.10:g.87082268dup, NC_000001.10:g.87082267_87082268dup

Select item 14910135839.

rs1491013583 has merged into rs869122916 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 1:86679091 (GRCh38)
1:87144774 (GRCh37)
Canonical SPDI:: NC_000001.11:86679089:TAT:T
Gene:: CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00346/41 (ALFA)
-=0.09718/1629 (TOMMO)
HGVS:: NC_000001.11:g.86679091_86679092del, NC_000001.10:g.87144774_87144775del

Select item 149099965410.

rs1490999654 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:86639737 (GRCh38)
1:87105420 (GRCh37)
Canonical SPDI:: NC_000001.11:86639736:G:A,NC_000001.11:86639736:G:C
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.86639737G>A, NC_000001.11:g.86639737G>C, NC_000001.10:g.87105420G>A, NC_000001.10:g.87105420G>C

Select item 149096808011.

rs1490968080 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AG [Show Flanks]
Chromosome:: 1:86634344 (GRCh38)
1:87100028 (GRCh37)
Canonical SPDI:: NC_000001.11:86634344:G:GAG
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: GA=0.000064/9 (GnomAD)
HGVS:: NC_000001.11:g.86634345_86634346insAG, NC_000001.10:g.87100028_87100029insAG, NM_004921.2:c.52_53insAG, NR_024604.1:n.70_71insAG, NM_004921.1:c.52_53insAG

Select item 149094586212.

rs1490945862 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:86657074 (GRCh38)
1:87122757 (GRCh37)
Canonical SPDI:: NC_000001.11:86657073:C:T
Gene:: CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.86657074C>T, NC_000001.10:g.87122757C>T

Select item 149093969513.

rs1490939695 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCTTT>- [Show Flanks]
Chromosome:: 1:86589965 (GRCh38)
1:87055648 (GRCh37)
Canonical SPDI:: NC_000001.11:86589963:TTCTTT:T
Gene:: CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.86589965_86589969del, NC_000001.10:g.87055648_87055652del

Select item 149093539514.

rs1490935395 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:86695811 (GRCh38)
1:87161494 (GRCh37)
Canonical SPDI:: NC_000001.11:86695810:G:A,NC_000001.11:86695810:G:C
Gene:: CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.86695811G>A, NC_000001.11:g.86695811G>C, NC_000001.10:g.87161494G>A, NC_000001.10:g.87161494G>C

Select item 149091711015.

rs1490917110 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:86607599 (GRCh38)
1:87073282 (GRCh37)
Canonical SPDI:: NC_000001.11:86607598:A:T
Gene:: CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.86607599A>T, NC_000001.10:g.87073282A>T

Select item 149089389516.

rs1490893895 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 1:86577370 (GRCh38)
1:87043054 (GRCh37)
Canonical SPDI:: NC_000001.11:86577370:AA:AAA
Gene:: CLCA4 (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.86577372dup, NC_000001.10:g.87043055dup

Select item 149087159317.

rs1490871593 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:86676681 (GRCh38)
1:87142364 (GRCh37)
Canonical SPDI:: NC_000001.11:86676680:T:G
Gene:: CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.86676681T>G, NC_000001.10:g.87142364T>G

Select item 149084171418.

rs1490841714 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:86637684 (GRCh38)
1:87103367 (GRCh37)
Canonical SPDI:: NC_000001.11:86637683:A:G
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000034/9 (TOPMED)
HGVS:: NC_000001.11:g.86637684A>G, NC_000001.10:g.87103367A>G

Select item 149083839619.

rs1490838396 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:86611859 (GRCh38)
1:87077542 (GRCh37)
Canonical SPDI:: NC_000001.11:86611858:G:A
Gene:: CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.86611859G>A, NC_000001.10:g.87077542G>A

Select item 149082321020.

rs1490823210 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:86621718 (GRCh38)
1:87087401 (GRCh37)
Canonical SPDI:: NC_000001.11:86621717:T:C
Gene:: CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.86621718T>C, NC_000001.10:g.87087401T>C

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