SNP Links for Gene (Select 10559) - SNP

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Select item 14915223221.

rs1491522322 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 6:87494074 (GRCh38)
6:88203792 (GRCh37)
Canonical SPDI:: NC_000006.12:87494073:CT:
Gene:: SLC35A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: -=0.00004/4 (GnomAD)
HGVS:: NC_000006.12:g.87494074_87494075del, NC_000006.11:g.88203792_88203793del, NG_016207.1:g.26150_26151del

Select item 14914543022.

rs1491454302 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 6:87497091 (GRCh38)
6:88206809 (GRCh37)
Canonical SPDI:: NC_000006.12:87497089:TCT:T
Gene:: SLC35A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.00003/8 (TOPMED)
HGVS:: NC_000006.12:g.87497091_87497092del, NC_000006.11:g.88206809_88206810del, NG_016207.1:g.29167_29168del

Select item 14914542103.

rs1491454210 [Homo sapiens]

Variant type:: INS
Alleles:: ->TTG [Show Flanks]
Chromosome:: 6:87512174 (GRCh38)
6:88221893 (GRCh37)
Canonical SPDI:: NC_000006.12:87512174::TTG
Gene:: SLC35A1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by cluster
MAF:: TTG=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.87512174_87512175insTTG, NC_000006.11:g.88221892_88221893insTTG, NG_016207.1:g.44250_44251insTTG, NM_006416.5:c.*648_*649insTTG, NM_006416.4:c.*648_*649insTTG, NM_001168398.2:c.*648_*649insTTG, NM_001168398.1:c.*648_*649insTTG

Select item 14913718314.

rs1491371831 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->TTTTTTGATTTTTTTTTTTTTTTTTT
Chromosome:: no mapping
Canonical SPDI:

Select item 14913395945.

rs1491339594 has merged into rs59459204 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTT>-,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 6:87492556 (GRCh38)
6:88202274 (GRCh37)
Canonical SPDI:: NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:87492545:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: SLC35A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTT=0./0 (ALFA)
-=0.491/2459 (1000Genomes)
HGVS:: NC_000006.12:g.87492556_87492564del, NC_000006.12:g.87492559_87492564del, NC_000006.12:g.87492560_87492564del, NC_000006.12:g.87492561_87492564del, NC_000006.12:g.87492562_87492564del, NC_000006.12:g.87492563_87492564del, NC_000006.12:g.87492564del, NC_000006.12:g.87492564dup, NC_000006.12:g.87492563_87492564dup, NC_000006.12:g.87492562_87492564dup, NC_000006.12:g.87492560_87492564dup, NC_000006.12:g.87492559_87492564dup, NC_000006.12:g.87492558_87492564dup, NC_000006.12:g.87492555_87492564dup, NC_000006.12:g.87492554_87492564dup, NC_000006.12:g.87492548_87492564dup, NC_000006.12:g.87492564_87492565insTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000006.12:g.87492564_87492565insTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000006.12:g.87492564_87492565insTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000006.11:g.88202274_88202282del, NC_000006.11:g.88202277_88202282del, NC_000006.11:g.88202278_88202282del, NC_000006.11:g.88202279_88202282del, NC_000006.11:g.88202280_88202282del, NC_000006.11:g.88202281_88202282del, NC_000006.11:g.88202282del, NC_000006.11:g.88202282dup, NC_000006.11:g.88202281_88202282dup, NC_000006.11:g.88202280_88202282dup, NC_000006.11:g.88202278_88202282dup, NC_000006.11:g.88202277_88202282dup, NC_000006.11:g.88202276_88202282dup, NC_000006.11:g.88202273_88202282dup, NC_000006.11:g.88202272_88202282dup, NC_000006.11:g.88202266_88202282dup, NC_000006.11:g.88202282_88202283insTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000006.11:g.88202282_88202283insTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000006.11:g.88202282_88202283insTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NG_016207.1:g.24632_24640del, NG_016207.1:g.24635_24640del, NG_016207.1:g.24636_24640del, NG_016207.1:g.24637_24640del, NG_016207.1:g.24638_24640del, NG_016207.1:g.24639_24640del, NG_016207.1:g.24640del, NG_016207.1:g.24640dup, NG_016207.1:g.24639_24640dup, NG_016207.1:g.24638_24640dup, NG_016207.1:g.24636_24640dup, NG_016207.1:g.24635_24640dup, NG_016207.1:g.24634_24640dup, NG_016207.1:g.24631_24640dup, NG_016207.1:g.24630_24640dup, NG_016207.1:g.24624_24640dup, NG_016207.1:g.24640_24641insTTTTTTTTTTTTTTTTTTTTTTTTTT, NG_016207.1:g.24640_24641insTTTTTTTTTTTTTTTTTTTTTTTTTTT, NG_016207.1:g.24640_24641insTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Select item 14912526066.

rs1491252606 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 6:87492545 (GRCh38)
6:88202263 (GRCh37)
Canonical SPDI:: NC_000006.12:87492544:AT:
Gene:: SLC35A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000006.12:g.87492545_87492546del, NC_000006.11:g.88202263_88202264del, NG_016207.1:g.24621_24622del

Select item 14912343647.

rs1491234364 has merged into rs71018023 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTTT,TTTTTTTT [Show Flanks]
Chromosome:: 6:87494082 (GRCh38)
6:88203800 (GRCh37)
Canonical SPDI:: NC_000006.12:87494074:TTTTTTTTTTTTT:TTTTTTT,NC_000006.12:87494074:TTTTTTTTTTTTT:TTTTTTTT,NC_000006.12:87494074:TTTTTTTTTTTTT:TTTTTTTTT,NC_000006.12:87494074:TTTTTTTTTTTTT:TTTTTTTTTT,NC_000006.12:87494074:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000006.12:87494074:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000006.12:87494074:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000006.12:87494074:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT
Gene:: SLC35A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
-=0.0937/361 (ALSPAC)
-=0.24/658 (1000Genomes)
HGVS:: NC_000006.12:g.87494082_87494087del, NC_000006.12:g.87494083_87494087del, NC_000006.12:g.87494084_87494087del, NC_000006.12:g.87494085_87494087del, NC_000006.12:g.87494086_87494087del, NC_000006.12:g.87494087del, NC_000006.12:g.87494087dup, NC_000006.12:g.87494086_87494087dup, NC_000006.11:g.88203800_88203805del, NC_000006.11:g.88203801_88203805del, NC_000006.11:g.88203802_88203805del, NC_000006.11:g.88203803_88203805del, NC_000006.11:g.88203804_88203805del, NC_000006.11:g.88203805del, NC_000006.11:g.88203805dup, NC_000006.11:g.88203804_88203805dup, NG_016207.1:g.26158_26163del, NG_016207.1:g.26159_26163del, NG_016207.1:g.26160_26163del, NG_016207.1:g.26161_26163del, NG_016207.1:g.26162_26163del, NG_016207.1:g.26163del, NG_016207.1:g.26163dup, NG_016207.1:g.26162_26163dup

Select item 14912187568.

rs1491218756 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 6:87470989 (GRCh38)
6:88180707 (GRCh37)
Canonical SPDI:: NC_000006.12:87470988:AT:
Gene:: SLC35A1 (Varview), LOC124901357 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
-=0.000071/1 (TOMMO)
-=0.000546/1 (Korea1K)
HGVS:: NC_000006.12:g.87470989_87470990del, NC_000006.11:g.88180707_88180708del, NG_016207.1:g.3065_3066del

Select item 14911859259.

rs1491185925 has merged into rs886061819 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTGT>-,GT [Show Flanks]
Chromosome:: 6:87512047 (GRCh38)
6:88221765 (GRCh37)
Canonical SPDI:: NC_000006.12:87512045:TGTGT:T,NC_000006.12:87512045:TGTGT:TGT
Gene:: SLC35A1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Clinical significance:: uncertain-significance
Validated:: by frequency,by alfa,by cluster
MAF:: TGT=0.000422/5 (ALFA)
-=0.000259/1 (ALSPAC)
-=0.000425/44 (GnomAD)
-=0.000809/3 (TWINSUK)
HGVS:: NC_000006.12:g.87512047_87512050del, NC_000006.12:g.87512047GT[1], NC_000006.11:g.88221765_88221768del, NC_000006.11:g.88221765GT[1], NG_016207.1:g.44123_44126del, NG_016207.1:g.44123GT[1], NM_006416.5:c.*521_*524del, NM_006416.5:c.*521GT[1], NM_006416.4:c.*521_*524del, NM_006416.4:c.*521GT[1], NM_001168398.2:c.*521_*524del, NM_001168398.2:c.*521GT[1], NM_001168398.1:c.*521_*524del, NM_001168398.1:c.*521GT[1]

Select item 149112838710.

rs1491128387 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 6:87497090 (GRCh38)
6:88206809 (GRCh37)
Canonical SPDI:: NC_000006.12:87497090:C:CC
Gene:: SLC35A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.87497091dup, NC_000006.11:g.88206809dup, NG_016207.1:g.29167dup

Select item 149090215711.

rs1490902157 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:87492362 (GRCh38)
6:88202080 (GRCh37)
Canonical SPDI:: NC_000006.12:87492361:G:T
Gene:: SLC35A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.0049/22 (ALFA)
T=0.0049/22 (Estonian)
HGVS:: NC_000006.12:g.87492362G>T, NC_000006.11:g.88202080G>T, NG_016207.1:g.24438G>T

Select item 149081122612.

rs1490811226 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:87490093 (GRCh38)
6:88199811 (GRCh37)
Canonical SPDI:: NC_000006.12:87490092:G:A
Gene:: SLC35A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.87490093G>A, NC_000006.11:g.88199811G>A, NG_016207.1:g.22169G>A

Select item 149080451213.

rs1490804512 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 6:87506280 (GRCh38)
6:88215998 (GRCh37)
Canonical SPDI:: NC_000006.12:87506279:T:A
Gene:: SLC35A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.87506280T>A, NC_000006.11:g.88215998T>A, NG_016207.1:g.38356T>A

Select item 149059058514.

rs1490590585 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:87489381 (GRCh38)
6:88199099 (GRCh37)
Canonical SPDI:: NC_000006.12:87489380:G:A
Gene:: SLC35A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.87489381G>A, NC_000006.11:g.88199099G>A, NG_016207.1:g.21457G>A

Select item 149052753015.

rs1490527530 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 6:87505267 (GRCh38)
6:88214985 (GRCh37)
Canonical SPDI:: NC_000006.12:87505265:ACA:A
Gene:: SLC35A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.87505267_87505268del, NC_000006.11:g.88214985_88214986del, NG_016207.1:g.37343_37344del

Select item 149045931116.

rs1490459311 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 6:87473256 (GRCh38)
6:88182974 (GRCh37)
Canonical SPDI:: NC_000006.12:87473255:C:G,NC_000006.12:87473255:C:T
Gene:: SLC35A1 (Varview), LOC124901357 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.87473256C>G, NC_000006.12:g.87473256C>T, NC_000006.11:g.88182974C>G, NC_000006.11:g.88182974C>T, NG_016207.1:g.5332C>G, NG_016207.1:g.5332C>T

Select item 149044214617.

rs1490442146 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 6:87506442 (GRCh38)
6:88216160 (GRCh37)
Canonical SPDI:: NC_000006.12:87506441:T:G
Gene:: SLC35A1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.87506442T>G, NC_000006.11:g.88216160T>G, NG_016207.1:g.38518T>G, NM_006416.5:c.568T>G, NM_006416.4:c.568T>G, NM_001168398.2:c.568T>G, NM_001168398.1:c.568T>G, NP_006407.1:p.Phe190Val, NP_001161870.1:p.Phe190Val

Select item 149043827618.

rs1490438276 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:87498039 (GRCh38)
6:88207757 (GRCh37)
Canonical SPDI:: NC_000006.12:87498038:T:C
Gene:: SLC35A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.87498039T>C, NC_000006.11:g.88207757T>C, NG_016207.1:g.30115T>C

Select item 149032142919.

rs1490321429 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 6:87489067 (GRCh38)
6:88198785 (GRCh37)
Canonical SPDI:: NC_000006.12:87489066:TT:T
Gene:: SLC35A1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.87489068del, NC_000006.11:g.88198786del, NG_016207.1:g.21144del

Select item 149013801320.

rs1490138013 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:87471369 (GRCh38)
6:88181087 (GRCh37)
Canonical SPDI:: NC_000006.12:87471368:T:C
Gene:: SLC35A1 (Varview), LOC124901357 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.87471369T>C, NC_000006.11:g.88181087T>C, NG_016207.1:g.3445T>C

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