SNP Links for Gene (Select 10794) - SNP

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Select item 14913253701.

rs1491325370 [Homo sapiens]

Variant type:: DEL
Alleles:: TG>- [Show Flanks]
Chromosome:: 19:57283526 (GRCh38)
19:57794894 (GRCh37)
Canonical SPDI:: NC_000019.10:57283525:TG:
Gene:: ZNF460 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000019.10:g.57283526_57283527del, NC_000019.9:g.57794894_57794895del

Select item 14912598782.

rs1491259878 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 19:57279152 (GRCh38)
19:57790520 (GRCh37)
Canonical SPDI:: NC_000019.10:57279151:CA:
Gene:: ZNF460 (Varview), ZNF460-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00076/9 (ALFA)
HGVS:: NC_000019.10:g.57279152_57279153del, NC_000019.9:g.57790520_57790521del

Select item 14912329493.

rs1491232949 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 19:57286962 (GRCh38)
19:57798330 (GRCh37)
Canonical SPDI:: NC_000019.10:57286961:CA:
Gene:: ZNF460 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00464/55 (ALFA)
HGVS:: NC_000019.10:g.57286962_57286963del, NC_000019.9:g.57798330_57798331del

Select item 14911680744.

rs1491168074 has merged into rs59993189 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAA>-,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 19:57279164 (GRCh38)
19:57790532 (GRCh37)
Canonical SPDI:: NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:57279152:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: ZNF460 (Varview), ZNF460-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAA=0./0 (ALFA)
-=0.3323/1664 (1000Genomes)
HGVS:: NC_000019.10:g.57279164_57279176del, NC_000019.10:g.57279167_57279176del, NC_000019.10:g.57279168_57279176del, NC_000019.10:g.57279169_57279176del, NC_000019.10:g.57279170_57279176del, NC_000019.10:g.57279171_57279176del, NC_000019.10:g.57279172_57279176del, NC_000019.10:g.57279173_57279176del, NC_000019.10:g.57279174_57279176del, NC_000019.10:g.57279175_57279176del, NC_000019.10:g.57279176del, NC_000019.10:g.57279176dup, NC_000019.10:g.57279175_57279176dup, NC_000019.10:g.57279174_57279176dup, NC_000019.10:g.57279173_57279176dup, NC_000019.10:g.57279172_57279176dup, NC_000019.10:g.57279171_57279176dup, NC_000019.10:g.57279170_57279176dup, NC_000019.10:g.57279168_57279176dup, NC_000019.10:g.57279176_57279177insAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000019.10:g.57279176_57279177insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000019.9:g.57790532_57790544del, NC_000019.9:g.57790535_57790544del, NC_000019.9:g.57790536_57790544del, NC_000019.9:g.57790537_57790544del, NC_000019.9:g.57790538_57790544del, NC_000019.9:g.57790539_57790544del, NC_000019.9:g.57790540_57790544del, NC_000019.9:g.57790541_57790544del, NC_000019.9:g.57790542_57790544del, NC_000019.9:g.57790543_57790544del, NC_000019.9:g.57790544del, NC_000019.9:g.57790544dup, NC_000019.9:g.57790543_57790544dup, NC_000019.9:g.57790542_57790544dup, NC_000019.9:g.57790541_57790544dup, NC_000019.9:g.57790540_57790544dup, NC_000019.9:g.57790539_57790544dup, NC_000019.9:g.57790538_57790544dup, NC_000019.9:g.57790536_57790544dup, NC_000019.9:g.57790544_57790545insAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000019.9:g.57790544_57790545insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 14911554285.

rs1491155428 has merged into rs59796969 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,T,TT,TTT,TTTTT,TTTTTT [Show Flanks]
Chromosome:: 19:57283157 (GRCh38)
19:57794525 (GRCh37)
Canonical SPDI:: NC_000019.10:57283145:TTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000019.10:57283145:TTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000019.10:57283145:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000019.10:57283145:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000019.10:57283145:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000019.10:57283145:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT
Gene:: ZNF460 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTT=0./0 (ALFA)
-=0.483/2419 (1000Genomes)
HGVS:: NC_000019.10:g.57283157_57283160del, NC_000019.10:g.57283158_57283160del, NC_000019.10:g.57283159_57283160del, NC_000019.10:g.57283160del, NC_000019.10:g.57283160dup, NC_000019.10:g.57283159_57283160dup, NC_000019.9:g.57794525_57794528del, NC_000019.9:g.57794526_57794528del, NC_000019.9:g.57794527_57794528del, NC_000019.9:g.57794528del, NC_000019.9:g.57794528dup, NC_000019.9:g.57794527_57794528dup

Select item 14908482096.

rs1490848209 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 19:57286889 (GRCh38)
19:57798257 (GRCh37)
Canonical SPDI:: NC_000019.10:57286888:A:
Gene:: ZNF460 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.57286889del, NC_000019.9:g.57798257del

Select item 14904735777.

rs1490473577 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:57280063 (GRCh38)
19:57791431 (GRCh37)
Canonical SPDI:: NC_000019.10:57280062:T:G
Gene:: ZNF460 (Varview), ZNF460-AS1 (Varview)
Functional Consequence:: 5_prime_UTR_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000019.10:g.57280063T>G, NC_000019.9:g.57791431T>G, NM_001330622.2:c.-155T>G, NM_001330622.1:c.-155T>G, XM_047438079.1:c.-226T>G

Select item 14904346848.

rs1490434684 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:57294865 (GRCh38)
19:57806233 (GRCh37)
Canonical SPDI:: NC_000019.10:57294864:A:G
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.57294865A>G, NC_000019.9:g.57806233A>G

Select item 14902708689.

rs1490270868 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:57280829 (GRCh38)
19:57792197 (GRCh37)
Canonical SPDI:: NC_000019.10:57280828:C:T
Gene:: ZNF460 (Varview), ZNF460-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,missense_variant,coding_sequence_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.57280829C>T, NC_000019.9:g.57792197C>T, NM_006635.4:c.23C>T, NM_006635.3:c.23C>T, NP_006626.3:p.Pro8Leu

Select item 148994579410.

rs1489945794 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 19:57295405 (GRCh38)
19:57806773 (GRCh37)
Canonical SPDI:: NC_000019.10:57295404:G:A,NC_000019.10:57295404:G:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
C=0.000106/2 (TOMMO)
HGVS:: NC_000019.10:g.57295405G>A, NC_000019.10:g.57295405G>C, NC_000019.9:g.57806773G>A, NC_000019.9:g.57806773G>C

Select item 148993503411.

rs1489935034 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:57296224 (GRCh38)
19:57807592 (GRCh37)
Canonical SPDI:: NC_000019.10:57296223:C:T
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.57296224C>T, NC_000019.9:g.57807592C>T

Select item 148967270112.

rs1489672701 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 19:57288383 (GRCh38)
19:57799751 (GRCh37)
Canonical SPDI:: NC_000019.10:57288382:GGG:GG
Gene:: ZNF460 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.57288385del, NC_000019.9:g.57799753del

Select item 148961373813.

rs1489613738 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:57287256 (GRCh38)
19:57798624 (GRCh37)
Canonical SPDI:: NC_000019.10:57287255:G:A
Gene:: ZNF460 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000049/13 (TOPMED)
HGVS:: NC_000019.10:g.57287256G>A, NC_000019.9:g.57798624G>A

Select item 148955969114.

rs1489559691 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:57281925 (GRCh38)
19:57793293 (GRCh37)
Canonical SPDI:: NC_000019.10:57281924:T:G
Gene:: ZNF460 (Varview), ZNF460-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.57281925T>G, NC_000019.9:g.57793293T>G

Select item 148949917915.

rs1489499179 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAGA>-,GA [Show Flanks]
Chromosome:: 19:57283006 (GRCh38)
19:57794374 (GRCh37)
Canonical SPDI:: NC_000019.10:57283000:AGAGAGAGA:AGAGA,NC_000019.10:57283000:AGAGAGAGA:AGAGAGA
Gene:: ZNF460 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAGAGA=0./0 (ALFA)
-=0.000301/42 (GnomAD)
-=0.000672/11 (TOMMO)
-=0.006667/4 (NorthernSweden)
HGVS:: NC_000019.10:g.57283002GA[2], NC_000019.10:g.57283002GA[3], NC_000019.9:g.57794370GA[2], NC_000019.9:g.57794370GA[3]

Select item 148948500616.

rs1489485006 [Homo sapiens]

Variant type:: SNV:
Alleles:: T>C
Chromosome:: no mapping
Canonical SPDI:

Select item 148934063617.

rs1489340636 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:57291498 (GRCh38)
19:57802866 (GRCh37)
Canonical SPDI:: NC_000019.10:57291497:G:A
Gene:: ZNF460 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by cluster
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.57291498G>A, NC_000019.9:g.57802866G>A, NM_006635.4:c.957G>A, NM_006635.3:c.957G>A, NM_001330622.2:c.834G>A, NM_001330622.1:c.834G>A, XM_047438079.1:c.936G>A

Select item 148925257018.

rs1489252570 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 19:57278861 (GRCh38)
19:57790229 (GRCh37)
Canonical SPDI:: NC_000019.10:57278860:A:G,NC_000019.10:57278860:A:T
Gene:: ZNF460 (Varview), ZNF460-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000043/6 (GnomAD)
HGVS:: NC_000019.10:g.57278861A>G, NC_000019.10:g.57278861A>T, NC_000019.9:g.57790229A>G, NC_000019.9:g.57790229A>T

Select item 148904058619.

rs1489040586 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:57289498 (GRCh38)
19:57800866 (GRCh37)
Canonical SPDI:: NC_000019.10:57289497:C:T
Gene:: ZNF460 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.57289498C>T, NC_000019.9:g.57800866C>T

Select item 148901724520.

rs1489017245 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:57289355 (GRCh38)
19:57800723 (GRCh37)
Canonical SPDI:: NC_000019.10:57289354:A:G
Gene:: ZNF460 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000035/1 (TOMMO)
HGVS:: NC_000019.10:g.57289355A>G, NC_000019.9:g.57800723A>G

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