SNP Links for Gene (Select 107987452) - SNP

Select item 14909324141.

rs1490932414 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:29755942 (GRCh38)
6:29723719 (GRCh37)
Canonical SPDI:: NC_000006.12:29755941:G:A
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00122/20 (ALFA)
A=0.01493/2 (Korea1K)
A=0.01677/49 (KOREAN)
A=0.02548/427 (TOMMO)
A=0.03326/213 (1000Genomes)
G=0.5/3 (SGDP_PRJ)
HGVS:: NC_000006.12:g.29755942G>A, NC_000006.11:g.29723719G>A, NT_113891.3:g.1239776G>A, NT_113891.2:g.1239882G>A, NT_167248.2:g.1018972G>A, NT_167248.1:g.1024568G>A, NT_167245.2:g.1018998G>A, NT_167245.1:g.1024583G>A, NT_167249.2:g.1062154G>A, NT_167249.1:g.1061452G>A, NT_167246.2:g.1018592G>A, NT_167246.1:g.1024212G>A, NT_167247.2:g.1018661G>A, NT_167247.1:g.1024246G>A

Select item 14908801952.

rs1490880195 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:29757431 (GRCh38)
6:29725208 (GRCh37)
Canonical SPDI:: NC_000006.12:29757430:C:T
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000006.12:g.29757431C>T, NC_000006.11:g.29725208C>T, NT_113891.3:g.1241246C>T, NT_113891.2:g.1241352C>T, NT_167248.2:g.1020445C>T, NT_167248.1:g.1026041C>T, NT_167245.2:g.1020471C>T, NT_167245.1:g.1026056C>T, NT_167249.2:g.1063619C>T, NT_167249.1:g.1062917C>T, NT_167246.2:g.1020065C>T, NT_167246.1:g.1025685C>T, NT_167247.2:g.1020137C>T, NT_167247.1:g.1025722C>T

Select item 14900277873.

rs1490027787 [Homo sapiens]

Variant type:: DEL
Alleles:: AC>- [Show Flanks]
Chromosome:: 6:29751483 (GRCh38)
6:29719260 (GRCh37)
Canonical SPDI:: NC_000006.12:29751482:AC:
Gene:: IFITM4P (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.01096/49 (ALFA)
-=0.00226/64 (TOMMO)
-=0.01094/49 (Estonian)
HGVS:: NC_000006.12:g.29751483_29751484del, NC_000006.11:g.29719260_29719261del, NT_113891.3:g.1235327_1235328del, NT_113891.2:g.1235433_1235434del, NT_167248.2:g.1014525_1014526del, NT_167248.1:g.1020121_1020122del, NT_167245.2:g.1014551_1014552del, NT_167245.1:g.1020136_1020137del, NT_167249.2:g.1057710_1057711del, NT_167249.1:g.1057008_1057009del, NT_167246.2:g.1014146_1014147del, NT_167246.1:g.1019766_1019767del, NT_167247.2:g.1014209_1014210del, NT_167247.1:g.1019794_1019795del

Select item 14893670434.

rs1489367043 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 6:29759821 (GRCh38)
6:29727598 (GRCh37)
Canonical SPDI:: NC_000006.12:29759820:T:G
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.29759821T>G, NC_000006.11:g.29727598T>G, NT_113891.3:g.1243601T>G, NT_113891.2:g.1243707T>G, NT_167248.2:g.1022800T>G, NT_167248.1:g.1028396T>G, NT_167245.2:g.1022826T>G, NT_167245.1:g.1028411T>G, NT_167249.2:g.1065974T>G, NT_167249.1:g.1065272T>G, NT_167246.2:g.1022420T>G, NT_167246.1:g.1028040T>G, NT_167247.2:g.1022492T>G, NT_167247.1:g.1028077T>G, NT_167244.2:g.1025651T>G, NW_003871063.1:g.1828T>G, NT_167244.1:g.1031245T>G

Select item 14893352415.

rs1489335241 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:29761089 (GRCh38)
6:29728866 (GRCh37)
Canonical SPDI:: NC_000006.12:29761088:G:A
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.29761089G>A, NC_000006.11:g.29728866G>A, NT_113891.3:g.1244869G>A, NT_113891.2:g.1244975G>A, NT_167248.2:g.1024068G>A, NT_167248.1:g.1029664G>A, NT_167245.2:g.1024094G>A, NT_167245.1:g.1029679G>A, NT_167249.2:g.1067242G>A, NT_167249.1:g.1066540G>A, NT_167246.2:g.1023688G>A, NT_167246.1:g.1029308G>A, NT_167247.2:g.1023760G>A, NT_167247.1:g.1029345G>A, NT_167244.2:g.1026919G>A, NW_003871063.1:g.3096G>A, NT_167244.1:g.1032513G>A

Select item 14892239756.

rs1489223975 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:29764545 (GRCh38)
6:29732322 (GRCh37)
Canonical SPDI:: NC_000006.12:29764544:C:T
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.29764545C>T, NC_000006.11:g.29732322C>T, NT_113891.3:g.1248323C>T, NT_113891.2:g.1248429C>T, NT_167248.2:g.1027524C>T, NT_167248.1:g.1033120C>T, NT_167245.2:g.1027550C>T, NT_167245.1:g.1033135C>T, NT_167249.2:g.1070701C>T, NT_167249.1:g.1069999C>T, NT_167246.2:g.1027145C>T, NT_167246.1:g.1032765C>T, NT_167247.2:g.1027216C>T, NT_167247.1:g.1032801C>T, NT_167244.2:g.1030373C>T, NW_003871063.1:g.6550C>T, NT_167244.1:g.1035967C>T

Select item 14891625577.

rs1489162557 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 6:29760485 (GRCh38)
6:29728263 (GRCh37)
Canonical SPDI:: NC_000006.12:29760485:A:AA
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000006.12:g.29760486dup, NC_000006.11:g.29728263dup, NT_113891.3:g.1244266dup, NT_113891.2:g.1244372dup, NT_167248.2:g.1023465dup, NT_167248.1:g.1029061dup, NT_167245.2:g.1023491dup, NT_167245.1:g.1029076dup, NT_167249.2:g.1066639dup, NT_167249.1:g.1065937dup, NT_167246.2:g.1023085dup, NT_167246.1:g.1028705dup, NT_167247.2:g.1023157dup, NT_167247.1:g.1028742dup, NT_167244.2:g.1026316dup, NW_003871063.1:g.2493dup, NT_167244.1:g.1031910dup

Select item 14891024648.

rs1489102464 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:29756473 (GRCh38)
6:29724250 (GRCh37)
Canonical SPDI:: NC_000006.12:29756472:T:C
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.29756473T>C, NC_000006.11:g.29724250T>C, NT_113891.3:g.1240287T>C, NT_113891.2:g.1240393T>C, NT_167248.2:g.1019487T>C, NT_167248.1:g.1025083T>C, NT_167245.2:g.1019513T>C, NT_167245.1:g.1025098T>C, NT_167249.2:g.1062659T>C, NT_167249.1:g.1061957T>C, NT_167246.2:g.1019107T>C, NT_167246.1:g.1024727T>C, NT_167247.2:g.1019178T>C, NT_167247.1:g.1024763T>C, XR_007068889.1:n.283T>C

Select item 14890174239.

rs1489017423 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 6:29758990 (GRCh38)
6:29726767 (GRCh37)
Canonical SPDI:: NC_000006.12:29758989:G:A,NC_000006.12:29758989:G:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000043/6 (GnomAD)
HGVS:: NC_000006.12:g.29758990G>A, NC_000006.12:g.29758990G>C, NC_000006.11:g.29726767G>A, NC_000006.11:g.29726767G>C, NT_113891.3:g.1242770G>A, NT_113891.3:g.1242770G>C, NT_113891.2:g.1242876G>A, NT_113891.2:g.1242876G>C, NT_167248.2:g.1021969G>A, NT_167248.2:g.1021969G>C, NT_167248.1:g.1027565G>A, NT_167248.1:g.1027565G>C, NT_167245.2:g.1021995G>A, NT_167245.2:g.1021995G>C, NT_167245.1:g.1027580G>A, NT_167245.1:g.1027580G>C, NT_167249.2:g.1065143G>A, NT_167249.2:g.1065143G>C, NT_167249.1:g.1064441G>A, NT_167249.1:g.1064441G>C, NT_167246.2:g.1021589G>A, NT_167246.2:g.1021589G>C, NT_167246.1:g.1027209G>A, NT_167246.1:g.1027209G>C, NT_167247.2:g.1021661G>A, NT_167247.2:g.1021661G>C, NT_167247.1:g.1027246G>A, NT_167247.1:g.1027246G>C, NT_167244.2:g.1024820G>A, NT_167244.2:g.1024820G>C, NW_003871063.1:g.997G>A, NW_003871063.1:g.997G>C, NT_167244.1:g.1030414G>A, NT_167244.1:g.1030414G>C

Select item 148896396510.

rs1488963965 [Homo sapiens]

Variant type:: DELINS
Alleles:: GCAATCT>- [Show Flanks]
Chromosome:: 6:29764332 (GRCh38)
6:29732109 (GRCh37)
Canonical SPDI:: NC_000006.12:29764326:AATCTGCAATCT:AATCT
Validated:: by frequency,by alfa
MAF:: AATCT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.29764332_29764338del, NC_000006.11:g.29732109_29732115del, NT_113891.3:g.1248110_1248116del, NT_113891.2:g.1248216_1248222del, NT_167248.2:g.1027311_1027317del, NT_167248.1:g.1032907_1032913del, NT_167245.2:g.1027337_1027343del, NT_167245.1:g.1032922_1032928del, NT_167249.2:g.1070488_1070494del, NT_167249.1:g.1069786_1069792del, NT_167246.2:g.1026932_1026938del, NT_167246.1:g.1032552_1032558del, NT_167247.2:g.1027003_1027009del, NT_167247.1:g.1032588_1032594del, NT_167244.2:g.1030160_1030166del, NW_003871063.1:g.6337_6343del, NT_167244.1:g.1035754_1035760del

Select item 148880371211.

rs1488803712 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:29758014 (GRCh38)
6:29725791 (GRCh37)
Canonical SPDI:: NC_000006.12:29758013:C:T
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.29758014C>T, NC_000006.11:g.29725791C>T, NT_113891.3:g.1241829C>T, NT_113891.2:g.1241935C>T, NT_167248.2:g.1021028C>T, NT_167248.1:g.1026624C>T, NT_167245.2:g.1021054C>T, NT_167245.1:g.1026639C>T, NT_167249.2:g.1064202C>T, NT_167249.1:g.1063500C>T, NT_167246.2:g.1020648C>T, NT_167246.1:g.1026268C>T, NT_167247.2:g.1020720C>T, NT_167247.1:g.1026305C>T, NT_167244.2:g.1023879C>T, NW_003871063.1:g.56C>T, NT_167244.1:g.1029473C>T

Select item 148801204212.

rs1488012042 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:29755224 (GRCh38)
6:29723001 (GRCh37)
Canonical SPDI:: NC_000006.12:29755223:T:C
Validated:: by frequency,by alfa
MAF:: C=0.00008/1 (ALFA)
HGVS:: NC_000006.12:g.29755224T>C, NC_000006.11:g.29723001T>C, NT_113891.3:g.1239060T>C, NT_113891.2:g.1239166T>C, NT_167248.2:g.1018256T>C, NT_167248.1:g.1023852T>C, NT_167245.2:g.1018282T>C, NT_167245.1:g.1023867T>C, NT_167249.2:g.1061438T>C, NT_167249.1:g.1060736T>C, NT_167246.2:g.1017876T>C, NT_167246.1:g.1023496T>C, NT_167247.2:g.1017945T>C, NT_167247.1:g.1023530T>C, XR_001756538.2:n.592T>C, XR_001756538.1:n.312T>C, XR_001756747.2:n.592T>C, XR_001756747.1:n.312T>C, XR_001756673.2:n.592T>C, XR_001756673.1:n.312T>C, XR_001756733.2:n.311T>C, XR_001756733.1:n.312T>C

Select item 148782867113.

rs1487828671 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:29752435 (GRCh38)
6:29720212 (GRCh37)
Canonical SPDI:: NC_000006.12:29752434:C:T
Gene:: IFITM4P (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000034/9 (TOPMED)
T=0.000036/5 (GnomAD)
HGVS:: NC_000006.12:g.29752435C>T, NC_000006.11:g.29720212C>T, NT_113891.3:g.1236275C>T, NT_113891.2:g.1236381C>T, NT_167248.2:g.1015473C>T, NT_167248.1:g.1021069C>T, NT_167245.2:g.1015499C>T, NT_167245.1:g.1021084C>T, NT_167249.2:g.1058658C>T, NT_167249.1:g.1057956C>T, NT_167246.2:g.1015094C>T, NT_167246.1:g.1020714C>T, NT_167247.2:g.1015157C>T, NT_167247.1:g.1020742C>T

Select item 148735140114.

rs1487351401 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:29756057 (GRCh38)
6:29723834 (GRCh37)
Canonical SPDI:: NC_000006.12:29756056:G:A
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.29756057G>A, NC_000006.11:g.29723834G>A, NT_113891.3:g.1239891G>A, NT_113891.2:g.1239997G>A, NT_167248.2:g.1019087G>A, NT_167248.1:g.1024683G>A, NT_167245.2:g.1019113G>A, NT_167245.1:g.1024698G>A, NT_167249.2:g.1062269G>A, NT_167249.1:g.1061567G>A, NT_167246.2:g.1018707G>A, NT_167246.1:g.1024327G>A, NT_167247.2:g.1018776G>A, NT_167247.1:g.1024361G>A

Select item 148729943615.

rs1487299436 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:29753633 (GRCh38)
6:29721410 (GRCh37)
Canonical SPDI:: NC_000006.12:29753632:G:A
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.29753633G>A, NC_000006.11:g.29721410G>A, NT_113891.3:g.1237475G>A, NT_113891.2:g.1237581G>A, NT_167248.2:g.1016673G>A, NT_167248.1:g.1022269G>A, NT_167245.2:g.1016699G>A, NT_167245.1:g.1022284G>A, NT_167249.2:g.1059854G>A, NT_167249.1:g.1059152G>A, NT_167246.2:g.1016294G>A, NT_167246.1:g.1021914G>A, NT_167247.2:g.1016357G>A, NT_167247.1:g.1021942G>A

Select item 148716473716.

rs1487164737 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:29756717 (GRCh38)
6:29724494 (GRCh37)
Canonical SPDI:: NC_000006.12:29756716:G:A
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000006.12:g.29756717G>A, NC_000006.11:g.29724494G>A, NT_113891.3:g.1240531G>A, NT_113891.2:g.1240637G>A, NT_167248.2:g.1019731G>A, NT_167248.1:g.1025327G>A, NT_167245.2:g.1019757G>A, NT_167245.1:g.1025342G>A, NT_167249.2:g.1062904G>A, NT_167249.1:g.1062202G>A, NT_167246.2:g.1019351G>A, NT_167246.1:g.1024971G>A, NT_167247.2:g.1019422G>A, NT_167247.1:g.1025007G>A, XR_007068889.1:n.528G>A

Select item 148704899917.

rs1487048999 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:29761113 (GRCh38)
6:29728890 (GRCh37)
Canonical SPDI:: NC_000006.12:29761112:C:A
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000006.12:g.29761113C>A, NC_000006.11:g.29728890C>A, NT_113891.3:g.1244893C>A, NT_113891.2:g.1244999C>A, NT_167248.2:g.1024092C>A, NT_167248.1:g.1029688C>A, NT_167245.2:g.1024118C>A, NT_167245.1:g.1029703C>A, NT_167249.2:g.1067266C>A, NT_167249.1:g.1066564C>A, NT_167246.2:g.1023712C>A, NT_167246.1:g.1029332C>A, NT_167247.2:g.1023784C>A, NT_167247.1:g.1029369C>A, NT_167244.2:g.1026943C>A, NW_003871063.1:g.3120C>A, NT_167244.1:g.1032537C>A

Select item 148688588018.

rs1486885880 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:29762501 (GRCh38)
6:29730278 (GRCh37)
Canonical SPDI:: NC_000006.12:29762500:A:G
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000068/18 (TOPMED)
G=0.000071/10 (GnomAD)
HGVS:: NC_000006.12:g.29762501A>G, NC_000006.11:g.29730278A>G, NT_113891.3:g.1246279A>G, NT_113891.2:g.1246385A>G, NT_167248.2:g.1025480A>G, NT_167248.1:g.1031076A>G, NT_167245.2:g.1025506A>G, NT_167245.1:g.1031091A>G, NT_167249.2:g.1068657A>G, NT_167249.1:g.1067955A>G, NT_167246.2:g.1025101A>G, NT_167246.1:g.1030721A>G, NT_167247.2:g.1025172A>G, NT_167247.1:g.1030757A>G, NT_167244.2:g.1028329A>G, NW_003871063.1:g.4506A>G, NT_167244.1:g.1033923A>G, XR_001756538.2:n.1720A>G, XR_001756538.1:n.1440A>G, XR_001756747.2:n.1720A>G, XR_001756747.1:n.1440A>G, XR_001756673.2:n.1720A>G, XR_001756673.1:n.1440A>G, XR_001756733.2:n.1439A>G, XR_001756733.1:n.1440A>G, XR_001756748.2:n.1247A>G, XR_001756748.1:n.894A>G, XR_001756711.2:n.1247A>G, XR_001756711.1:n.894A>G, XR_001756674.2:n.1247A>G, XR_001756674.1:n.894A>G, XR_001756710.2:n.967A>G, XR_001756710.1:n.967A>G

Select item 148668471219.

rs1486684712 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:29756680 (GRCh38)
6:29724457 (GRCh37)
Canonical SPDI:: NC_000006.12:29756679:G:T
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000006.12:g.29756680G>T, NC_000006.11:g.29724457G>T, NT_113891.3:g.1240494G>T, NT_113891.2:g.1240600G>T, NT_167248.2:g.1019694G>T, NT_167248.1:g.1025290G>T, NT_167245.2:g.1019720G>T, NT_167245.1:g.1025305G>T, NT_167249.2:g.1062867G>T, NT_167249.1:g.1062165G>T, NT_167246.2:g.1019314G>T, NT_167246.1:g.1024934G>T, NT_167247.2:g.1019385G>T, NT_167247.1:g.1024970G>T, XR_007068889.1:n.491G>T

Select item 148650631120.

rs1486506311 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:29753565 (GRCh38)
6:29721342 (GRCh37)
Canonical SPDI:: NC_000006.12:29753564:T:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000006.12:g.29753565T>C, NC_000006.11:g.29721342T>C, NT_113891.3:g.1237405T>C, NT_113891.2:g.1237511T>C, NT_167248.2:g.1016603T>C, NT_167248.1:g.1022199T>C, NT_167245.2:g.1016629T>C, NT_167245.1:g.1022214T>C, NT_167249.2:g.1059784T>C, NT_167249.1:g.1059082T>C, NT_167246.2:g.1016224T>C, NT_167246.1:g.1021844T>C, NT_167247.2:g.1016287T>C, NT_167247.1:g.1021872T>C

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