SNP Links for Gene (Select 11153) - SNP

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Select item 14914560001.

rs1491456000 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 12:108519604 (GRCh38)
12:108913381 (GRCh37)
Canonical SPDI:: NC_000012.12:108519603:TA:
Gene:: FICD (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000169/2 (ALFA)
-=0.000825/113 (GnomAD)
-=0.0023/38 (TOMMO)
-=0.007326/4 (NorthernSweden)
-=0.012101/22 (Korea1K)
HGVS:: NC_000012.12:g.108519604_108519605del, NC_000012.11:g.108913381_108913382del, NM_007076.3:c.*129_*130del

Select item 14914158542.

rs1491415854 has merged into rs11431127 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTT>-,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 12:108520099 (GRCh38)
12:108913876 (GRCh37)
Canonical SPDI:: NC_000012.12:108520087:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000012.12:108520087:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000012.12:108520087:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000012.12:108520087:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000012.12:108520087:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000012.12:108520087:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000012.12:108520087:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000012.12:108520087:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000012.12:108520087:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000012.12:108520087:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000012.12:108520087:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000012.12:108520087:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000012.12:108520087:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: FICD (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000012.12:g.108520099_108520106del, NC_000012.12:g.108520102_108520106del, NC_000012.12:g.108520103_108520106del, NC_000012.12:g.108520104_108520106del, NC_000012.12:g.108520105_108520106del, NC_000012.12:g.108520106del, NC_000012.12:g.108520106dup, NC_000012.12:g.108520105_108520106dup, NC_000012.12:g.108520104_108520106dup, NC_000012.12:g.108520103_108520106dup, NC_000012.12:g.108520102_108520106dup, NC_000012.12:g.108520101_108520106dup, NC_000012.12:g.108520100_108520106dup, NC_000012.11:g.108913876_108913883del, NC_000012.11:g.108913879_108913883del, NC_000012.11:g.108913880_108913883del, NC_000012.11:g.108913881_108913883del, NC_000012.11:g.108913882_108913883del, NC_000012.11:g.108913883del, NC_000012.11:g.108913883dup, NC_000012.11:g.108913882_108913883dup, NC_000012.11:g.108913881_108913883dup, NC_000012.11:g.108913880_108913883dup, NC_000012.11:g.108913879_108913883dup, NC_000012.11:g.108913878_108913883dup, NC_000012.11:g.108913877_108913883dup, NM_007076.3:c.*624_*631del, NM_007076.3:c.*627_*631del, NM_007076.3:c.*628_*631del, NM_007076.3:c.*629_*631del, NM_007076.3:c.*630_*631del, NM_007076.3:c.*631del, NM_007076.3:c.*631dup, NM_007076.3:c.*630_*631dup, NM_007076.3:c.*629_*631dup, NM_007076.3:c.*628_*631dup, NM_007076.3:c.*627_*631dup, NM_007076.3:c.*626_*631dup, NM_007076.3:c.*625_*631dup

Select item 14912647583.

rs1491264758 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>- [Show Flanks]
Chromosome:: 12:108513460 (GRCh38)
12:108907237 (GRCh37)
Canonical SPDI:: NC_000012.12:108513458:ATA:A
Gene:: FICD (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.108513460_108513461del, NC_000012.11:g.108907237_108907238del

Select item 14911563624.

rs1491156362 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ATAGATAGGTAG,ATAGATAGTTAG,ATAGGTAG,ATAGTTAG,GTAG [Show Flanks]
Chromosome:: 12:108513459 (GRCh38)
12:108907237 (GRCh37)
Canonical SPDI:: NC_000012.12:108513459:TAG:TAGATAGATAGGTAG,NC_000012.12:108513459:TAG:TAGATAGATAGTTAG,NC_000012.12:108513459:TAG:TAGATAGGTAG,NC_000012.12:108513459:TAG:TAGATAGTTAG,NC_000012.12:108513459:TAG:TAGGTAG
Gene:: FICD (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TAGATAGATAGTTAG=0./0 (ALFA)
HGVS:: NC_000012.12:g.108513460_108513462TAGA[2]TAGGTAG[1], NC_000012.12:g.108513460_108513462TAGA[2]TAGTTAG[1], NC_000012.12:g.108513462_108513463insATAGGTAG, NC_000012.12:g.108513462_108513463insATAGTTAG, NC_000012.12:g.108513462_108513463insGTAG, NC_000012.11:g.108907237_108907239TAGA[2]TAGGTAG[1], NC_000012.11:g.108907237_108907239TAGA[2]TAGTTAG[1], NC_000012.11:g.108907239_108907240insATAGGTAG, NC_000012.11:g.108907239_108907240insATAGTTAG, NC_000012.11:g.108907239_108907240insGTAG

Select item 14888855975.

rs1488885597 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GTTT [Show Flanks]
Chromosome:: 12:108520096 (GRCh38)
12:108913874 (GRCh37)
Canonical SPDI:: NC_000012.12:108520096:TTT:TTTGTTT
Gene:: FICD (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: TTTGTTT=0./0 (ALFA)
TTTG=0.000022/3 (GnomAD)
HGVS:: NC_000012.12:g.108520099_108520100insGTTT, NC_000012.11:g.108913876_108913877insGTTT, NM_007076.3:c.*624_*625insGTTT

Select item 14884637056.

rs1488463705 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:108514391 (GRCh38)
12:108908168 (GRCh37)
Canonical SPDI:: NC_000012.12:108514390:G:A
Gene:: FICD (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.00006/1 (TOMMO)
A=0.000223/1 (Estonian)
HGVS:: NC_000012.12:g.108514391G>A, NC_000012.11:g.108908168G>A

Select item 14875861887.

rs1487586188 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:108517325 (GRCh38)
12:108911102 (GRCh37)
Canonical SPDI:: NC_000012.12:108517324:A:G
Gene:: FICD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.108517325A>G, NC_000012.11:g.108911102A>G

Select item 14875722388.

rs1487572238 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:108515625 (GRCh38)
12:108909402 (GRCh37)
Canonical SPDI:: NC_000012.12:108515624:G:A
Gene:: FICD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.108515625G>A, NC_000012.11:g.108909402G>A

Select item 14875307899.

rs1487530789 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:108516536 (GRCh38)
12:108910313 (GRCh37)
Canonical SPDI:: NC_000012.12:108516535:G:A
Gene:: FICD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000012.12:g.108516536G>A, NC_000012.11:g.108910313G>A

Select item 148716271510.

rs1487162715 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 12:108520086 (GRCh38)
12:108913863 (GRCh37)
Canonical SPDI:: NC_000012.12:108520085:T:
Gene:: FICD (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000012.12:g.108520086del, NC_000012.11:g.108913863del, NM_007076.3:c.*611del

Select item 148699323011.

rs1486993230 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:108514699 (GRCh38)
12:108908476 (GRCh37)
Canonical SPDI:: NC_000012.12:108514698:A:G
Gene:: FICD (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000038/10 (TOPMED)
HGVS:: NC_000012.12:g.108514699A>G, NC_000012.11:g.108908476A>G

Select item 148687398012.

rs1486873980 [Homo sapiens]

Variant type:: SNV:
Alleles:: T>A
Chromosome:: no mapping
Canonical SPDI:

Select item 148687178713.

rs1486871787 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:108517535 (GRCh38)
12:108911312 (GRCh37)
Canonical SPDI:: NC_000012.12:108517534:G:A
Gene:: FICD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.108517535G>A, NC_000012.11:g.108911312G>A

Select item 148678099514.

rs1486780995 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 12:108514339 (GRCh38)
12:108908116 (GRCh37)
Canonical SPDI:: NC_000012.12:108514338:T:A,NC_000012.12:108514338:T:C
Gene:: FICD (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000012.12:g.108514339T>A, NC_000012.12:g.108514339T>C, NC_000012.11:g.108908116T>A, NC_000012.11:g.108908116T>C

Select item 148663122815.

rs1486631228 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:108513956 (GRCh38)
12:108907733 (GRCh37)
Canonical SPDI:: NC_000012.12:108513955:A:G
Gene:: FICD (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
HGVS:: NC_000012.12:g.108513956A>G, NC_000012.11:g.108907733A>G

Select item 148659810616.

rs1486598106 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 12:108513372 (GRCh38)
12:108907149 (GRCh37)
Canonical SPDI:: NC_000012.12:108513371:G:
Gene:: FICD (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000023/6 (TOPMED)
HGVS:: NC_000012.12:g.108513372del, NC_000012.11:g.108907149del

Select item 148579917917.

rs1485799179 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 12:108513768 (GRCh38)
12:108907545 (GRCh37)
Canonical SPDI:: NC_000012.12:108513767:AAAA:AAA
Gene:: FICD (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.108513771del, NC_000012.11:g.108907548del

Select item 148571888918.

rs1485718889 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TA [Show Flanks]
Chromosome:: 12:108519849 (GRCh38)
12:108913627 (GRCh37)
Canonical SPDI:: NC_000012.12:108519849:ATA:ATATA
Gene:: FICD (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATA=0./0 (ALFA)
AT=0.000015/4 (TOPMED)
AT=0.000029/4 (GnomAD)
HGVS:: NC_000012.12:g.108519851_108519852dup, NC_000012.11:g.108913628_108913629dup, NM_007076.3:c.*376_*377dup

Select item 148443010719.

rs1484430107 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:108518213 (GRCh38)
12:108911990 (GRCh37)
Canonical SPDI:: NC_000012.12:108518212:G:A
Gene:: FICD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/1 (GnomAD_exomes)
A=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.108518213G>A, NC_000012.11:g.108911990G>A

Select item 148380434720.

rs1483804347 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:108517073 (GRCh38)
12:108910850 (GRCh37)
Canonical SPDI:: NC_000012.12:108517072:T:C
Gene:: FICD (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0./0 (GnomAD)
C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000012.12:g.108517073T>C, NC_000012.11:g.108910850T>C, NM_007076.3:c.101T>C, NM_007076.2:c.101T>C, NP_009007.2:p.Leu34Pro

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