Links from Gene
Items: 1 to 20 of 1000
1.
rs1491566053 has merged into rs11306025 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TT>-,T,TTT,TTTT
[Show Flanks]
- Chromosome:
- 2:157307022
(GRCh38)
2:158163534
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157307010:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000002.12:157307010:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000002.12:157307010:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000002.12:157307010:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTTTTTT=0./0
(
ALFA)
T=0.0485/180
(TWINSUK)
T=0.049/189
(ALSPAC)
T=0.07/42
(NorthernSweden)
T=0.075/3
(GENOME_DK)
T=0.1362/682
(1000Genomes)
- HGVS:
2.
rs1491442698 has merged into rs1288089376 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTTT>-,TT,TTT,TTTT,TTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 2:157317204
(GRCh38)
2:158173716
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157317198:TTTTTTTTTTT:TTTTT,NC_000002.12:157317198:TTTTTTTTTTT:TTTTTTT,NC_000002.12:157317198:TTTTTTTTTTT:TTTTTTTT,NC_000002.12:157317198:TTTTTTTTTTT:TTTTTTTTT,NC_000002.12:157317198:TTTTTTTTTTT:TTTTTTTTTT,NC_000002.12:157317198:TTTTTTTTTTT:TTTTTTTTTTTT,NC_000002.12:157317198:TTTTTTTTTTT:TTTTTTTTTTTTT,NC_000002.12:157317198:TTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000002.12:157317198:TTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000002.12:157317198:TTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000002.12:157317198:TTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000002.12:157317198:TTTTTTTTTTT:TTTTTTTTTTTTTTTTTT
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,3_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
- HGVS:
NC_000002.12:g.157317204_157317209del, NC_000002.12:g.157317206_157317209del, NC_000002.12:g.157317207_157317209del, NC_000002.12:g.157317208_157317209del, NC_000002.12:g.157317209del, NC_000002.12:g.157317209dup, NC_000002.12:g.157317208_157317209dup, NC_000002.12:g.157317207_157317209dup, NC_000002.12:g.157317206_157317209dup, NC_000002.12:g.157317205_157317209dup, NC_000002.12:g.157317204_157317209dup, NC_000002.12:g.157317203_157317209dup, NC_000002.11:g.158173716_158173721del, NC_000002.11:g.158173718_158173721del, NC_000002.11:g.158173719_158173721del, NC_000002.11:g.158173720_158173721del, NC_000002.11:g.158173721del, NC_000002.11:g.158173721dup, NC_000002.11:g.158173720_158173721dup, NC_000002.11:g.158173719_158173721dup, NC_000002.11:g.158173718_158173721dup, NC_000002.11:g.158173717_158173721dup, NC_000002.11:g.158173716_158173721dup, NC_000002.11:g.158173715_158173721dup, NM_014568.3:c.*5856_*5861del, NM_014568.3:c.*5858_*5861del, NM_014568.3:c.*5859_*5861del, NM_014568.3:c.*5860_*5861del, NM_014568.3:c.*5861del, NM_014568.3:c.*5861dup, NM_014568.3:c.*5860_*5861dup, NM_014568.3:c.*5859_*5861dup, NM_014568.3:c.*5858_*5861dup, NM_014568.3:c.*5857_*5861dup, NM_014568.3:c.*5856_*5861dup, NM_014568.3:c.*5855_*5861dup, NM_014568.2:c.*5856_*5861del, NM_014568.2:c.*5858_*5861del, NM_014568.2:c.*5859_*5861del, NM_014568.2:c.*5860_*5861del, NM_014568.2:c.*5861del, NM_014568.2:c.*5861dup, NM_014568.2:c.*5860_*5861dup, NM_014568.2:c.*5859_*5861dup, NM_014568.2:c.*5858_*5861dup, NM_014568.2:c.*5857_*5861dup, NM_014568.2:c.*5856_*5861dup, NM_014568.2:c.*5855_*5861dup, NM_001329868.2:c.*5856_*5861del, NM_001329868.2:c.*5858_*5861del, NM_001329868.2:c.*5859_*5861del, NM_001329868.2:c.*5860_*5861del, NM_001329868.2:c.*5861del, NM_001329868.2:c.*5861dup, NM_001329868.2:c.*5860_*5861dup, NM_001329868.2:c.*5859_*5861dup, NM_001329868.2:c.*5858_*5861dup, NM_001329868.2:c.*5857_*5861dup, NM_001329868.2:c.*5856_*5861dup, NM_001329868.2:c.*5855_*5861dup, NM_001329868.1:c.*5856_*5861del, NM_001329868.1:c.*5858_*5861del, NM_001329868.1:c.*5859_*5861del, NM_001329868.1:c.*5860_*5861del, NM_001329868.1:c.*5861del, NM_001329868.1:c.*5861dup, NM_001329868.1:c.*5860_*5861dup, NM_001329868.1:c.*5859_*5861dup, NM_001329868.1:c.*5858_*5861dup, NM_001329868.1:c.*5857_*5861dup, NM_001329868.1:c.*5856_*5861dup, NM_001329868.1:c.*5855_*5861dup
3.
rs1491435536 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->TTGTGT
[Show Flanks]
- Chromosome:
- 2:157286894
(GRCh38)
2:158143407
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157286894:TGTGT:TGTGTTTGTGT
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TGTGTTTGTGT=0./0
(
ALFA)
TGTGTT=0.000004/1
(TOPMED)
TGTGTT=0.000032/1
(GnomAD)
- HGVS:
4.
rs1491383891 has merged into rs3072178 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- GTGTGTGTGTGTGTGTGTGTGTGTGT>-,GT,GTGT,GTGTGT,GTGTGTGT,GTGTGTGTGT,GTGTGTGTGTGT,GTGTGTGTGTGTGT,GTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
[Show Flanks]
- Chromosome:
- 2:157286912
(GRCh38)
2:158143424
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000002.12:157286893:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
GTGTGTGTGTGTGTGTGT=0./0
(
ALFA)
-=0.1297/500
(ALSPAC)
- HGVS:
NC_000002.12:g.157286894GT[9], NC_000002.12:g.157286894GT[10], NC_000002.12:g.157286894GT[11], NC_000002.12:g.157286894GT[12], NC_000002.12:g.157286894GT[13], NC_000002.12:g.157286894GT[14], NC_000002.12:g.157286894GT[15], NC_000002.12:g.157286894GT[16], NC_000002.12:g.157286894GT[17], NC_000002.12:g.157286894GT[18], NC_000002.12:g.157286894GT[19], NC_000002.12:g.157286894GT[20], NC_000002.12:g.157286894GT[21], NC_000002.12:g.157286894GT[23], NC_000002.12:g.157286894GT[24], NC_000002.12:g.157286894GT[25], NC_000002.12:g.157286894GT[26], NC_000002.12:g.157286894GT[27], NC_000002.12:g.157286894GT[28], NC_000002.12:g.157286894GT[29], NC_000002.12:g.157286894GT[30], NC_000002.12:g.157286894GT[31], NC_000002.12:g.157286894GT[32], NC_000002.11:g.158143406GT[9], NC_000002.11:g.158143406GT[10], NC_000002.11:g.158143406GT[11], NC_000002.11:g.158143406GT[12], NC_000002.11:g.158143406GT[13], NC_000002.11:g.158143406GT[14], NC_000002.11:g.158143406GT[15], NC_000002.11:g.158143406GT[16], NC_000002.11:g.158143406GT[17], NC_000002.11:g.158143406GT[18], NC_000002.11:g.158143406GT[19], NC_000002.11:g.158143406GT[20], NC_000002.11:g.158143406GT[21], NC_000002.11:g.158143406GT[23], NC_000002.11:g.158143406GT[24], NC_000002.11:g.158143406GT[25], NC_000002.11:g.158143406GT[26], NC_000002.11:g.158143406GT[27], NC_000002.11:g.158143406GT[28], NC_000002.11:g.158143406GT[29], NC_000002.11:g.158143406GT[30], NC_000002.11:g.158143406GT[31], NC_000002.11:g.158143406GT[32]
5.
rs1491355025 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->G
[Show Flanks]
- Chromosome:
- 2:157317167
(GRCh38)
2:158173680
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157317167:G:GG
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,3_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
GG=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000008/1
(GnomAD)
- HGVS:
6.
rs1491196830 [Homo sapiens]- Variant type:
- INS
- Alleles:
- ->A,ATA,ATATA,ATATATA,ATATATATA
[Show Flanks]
- Chromosome:
- 2:157317199
(GRCh38)
2:158173712
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157317199::A,NC_000002.12:157317199::ATA,NC_000002.12:157317199::ATATA,NC_000002.12:157317199::ATATATA,NC_000002.12:157317199::ATATATATA
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,3_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
ATA=0./0
(
ALFA)
A=0.00964/17
(Korea1K)
- HGVS:
NC_000002.12:g.157317199_157317200insA, NC_000002.12:g.157317199_157317200insATA, NC_000002.12:g.157317199_157317200insATATA, NC_000002.12:g.157317199_157317200insATATATA, NC_000002.12:g.157317199_157317200insATATATATA, NC_000002.11:g.158173711_158173712insA, NC_000002.11:g.158173711_158173712insATA, NC_000002.11:g.158173711_158173712insATATA, NC_000002.11:g.158173711_158173712insATATATA, NC_000002.11:g.158173711_158173712insATATATATA, NM_014568.3:c.*5851_*5852insA, NM_014568.3:c.*5851_*5852insATA, NM_014568.3:c.*5851_*5852insATATA, NM_014568.3:c.*5851_*5852insATATATA, NM_014568.3:c.*5851_*5852insATATATATA, NM_014568.2:c.*5851_*5852insA, NM_014568.2:c.*5851_*5852insATA, NM_014568.2:c.*5851_*5852insATATA, NM_014568.2:c.*5851_*5852insATATATA, NM_014568.2:c.*5851_*5852insATATATATA, NM_001329868.2:c.*5851_*5852insA, NM_001329868.2:c.*5851_*5852insATA, NM_001329868.2:c.*5851_*5852insATATA, NM_001329868.2:c.*5851_*5852insATATATA, NM_001329868.2:c.*5851_*5852insATATATATA, NM_001329868.1:c.*5851_*5852insA, NM_001329868.1:c.*5851_*5852insATA, NM_001329868.1:c.*5851_*5852insATATA, NM_001329868.1:c.*5851_*5852insATATATA, NM_001329868.1:c.*5851_*5852insATATATATA
7.
rs1491186325 has merged into rs1389307364 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- GT>-,GTGT
[Show Flanks]
- Chromosome:
- 2:157317174
(GRCh38)
2:158173686
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157317166:TGTGTGTGT:TGTGTGT,NC_000002.12:157317166:TGTGTGTGT:TGTGTGTGTGT
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- 3_prime_UTR_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TGTGTGTGTGT=0./0
(
ALFA)
TG=0.00843/54
(1000Genomes)
- HGVS:
NC_000002.12:g.157317168GT[3], NC_000002.12:g.157317168GT[5], NC_000002.11:g.158173680GT[3], NC_000002.11:g.158173680GT[5], NM_014568.3:c.*5820GT[3], NM_014568.3:c.*5820GT[5], NM_014568.2:c.*5820GT[3], NM_014568.2:c.*5820GT[5], NM_001329868.2:c.*5820GT[3], NM_001329868.2:c.*5820GT[5], NM_001329868.1:c.*5820GT[3], NM_001329868.1:c.*5820GT[5]
8.
rs1491141569 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- AG>-
[Show Flanks]
- Chromosome:
- 2:157286893
(GRCh38)
2:158143405
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157286892:AG:
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
-=0.000084/1
(
ALFA)
-=0.000027/3
(GnomAD)
- HGVS:
9.
rs1491133725 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- AT>-
[Show Flanks]
- Chromosome:
- 2:157307010
(GRCh38)
2:158163522
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157307009:AT:
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
-=0./0
(
ALFA)
-=0.00003/1
(GnomAD)
- HGVS:
10.
rs1491063674 has merged into rs535714685 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAAAA>-,A,AAA,AAAA,AAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAA
[Show Flanks]
- Chromosome:
- 2:157262220
(GRCh38)
2:158118732
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157262207:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000002.12:157262207:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000002.12:157262207:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000002.12:157262207:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000002.12:157262207:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000002.12:157262207:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000002.12:157262207:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000002.12:157262207:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000002.12:157262207:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:157262207:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:157262207:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:157262207:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:157262207:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:157262207:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:157262207:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:157262207:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAA
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAAAAAAAAAAA=0./0
(
ALFA)
-=0.1857/930
(1000Genomes)
- HGVS:
NC_000002.12:g.157262220_157262225del, NC_000002.12:g.157262221_157262225del, NC_000002.12:g.157262223_157262225del, NC_000002.12:g.157262224_157262225del, NC_000002.12:g.157262225del, NC_000002.12:g.157262225dup, NC_000002.12:g.157262224_157262225dup, NC_000002.12:g.157262223_157262225dup, NC_000002.12:g.157262222_157262225dup, NC_000002.12:g.157262219_157262225dup, NC_000002.12:g.157262216_157262225dup, NC_000002.12:g.157262212_157262225dup, NC_000002.12:g.157262225_157262226insAAAAAAAAAAAAAAAAAAAAA, NC_000002.12:g.157262225_157262226insAAAAAAAAAAAAAAAAAAAAAAAA, NC_000002.12:g.157262208_157262225A[37]GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA[1], NC_000002.12:g.157262208_157262225A[30]TAAAAAAAAAAAAAAAAAAAAAAA[1], NC_000002.11:g.158118732_158118737del, NC_000002.11:g.158118733_158118737del, NC_000002.11:g.158118735_158118737del, NC_000002.11:g.158118736_158118737del, NC_000002.11:g.158118737del, NC_000002.11:g.158118737dup, NC_000002.11:g.158118736_158118737dup, NC_000002.11:g.158118735_158118737dup, NC_000002.11:g.158118734_158118737dup, NC_000002.11:g.158118731_158118737dup, NC_000002.11:g.158118728_158118737dup, NC_000002.11:g.158118724_158118737dup, NC_000002.11:g.158118737_158118738insAAAAAAAAAAAAAAAAAAAAA, NC_000002.11:g.158118737_158118738insAAAAAAAAAAAAAAAAAAAAAAAA, NC_000002.11:g.158118720_158118737A[37]GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA[1], NC_000002.11:g.158118720_158118737A[30]TAAAAAAAAAAAAAAAAAAAAAAA[1]
11.
rs1490933774 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 2:157285414
(GRCh38)
2:158141926
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157285413:T:C
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
C=0.000007/1
(GnomAD)
- HGVS:
12.
rs1490865197 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 2:157284216
(GRCh38)
2:158140728
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157284215:A:G
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS:
13.
rs1490617197 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G,T
[Show Flanks]
- Chromosome:
- 2:157285923
(GRCh38)
2:158142435
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157285922:A:G,NC_000002.12:157285922:A:T
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
- HGVS:
14.
rs1490584142 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 2:157287989
(GRCh38)
2:158144501
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157287988:C:T
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
T=0.000007/1
(GnomAD)
- HGVS:
15.
rs1490537860 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 2:157308080
(GRCh38)
2:158164592
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157308079:A:G
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000014/2
(GnomAD)
- HGVS:
16.
rs1490510780 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 2:157304161
(GRCh38)
2:158160673
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157304160:A:G
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000007/1
(GnomAD)
G=0.000008/2
(TOPMED)
- HGVS:
19.
rs1490478255 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 2:157270312
(GRCh38)
2:158126824
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157270311:T:C
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000011/3
(TOPMED)
C=0.000021/3
(GnomAD)
C=0.000312/2
(1000Genomes)
- HGVS:
20.
rs1490434972 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 2:157306951
(GRCh38)
2:158163463
(GRCh37)
- Canonical SPDI:
- NC_000002.12:157306950:T:C
- Gene:
- GALNT5 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
- HGVS: